Wall clock time and date at job start Mon Mar 30 2020 03:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47380 * 2 1 4 4 N 1.46496 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.36797 * 120.00305 * 264.33738 * 4 3 2 6 6 H 1.07999 * 119.99936 * 137.50223 * 5 4 3 7 7 C 1.39099 * 119.99927 * 317.50472 * 5 4 3 8 8 N 1.31323 * 119.99952 * 163.75367 * 7 5 4 9 9 Si 1.86799 * 119.99920 * 343.75141 * 7 5 4 10 10 H 1.48503 * 109.47030 * 94.89262 * 9 7 5 11 11 H 1.48507 * 109.46983 * 214.88999 * 9 7 5 12 12 H 1.48498 * 109.47205 * 334.89015 * 9 7 5 13 13 C 1.34780 * 119.99473 * 84.33444 * 4 3 2 14 14 O 1.21553 * 120.00354 * 4.64880 * 13 4 3 15 15 C 1.48012 * 119.99685 * 184.64330 * 13 4 3 16 16 C 1.40108 * 120.89168 * 326.72513 * 15 13 4 17 17 C 1.37904 * 119.16821 * 180.02562 * 16 15 13 18 18 N 1.31949 * 121.00492 * 359.72663 * 17 16 15 19 19 C 1.32337 * 121.96382 * 0.56522 * 18 17 16 20 20 N 1.39034 * 119.63683 * 179.70916 * 19 18 17 21 21 C 1.46504 * 119.99453 * 184.72937 * 20 19 18 22 22 C 1.46499 * 120.00397 * 4.72977 * 20 19 18 23 23 C 1.39075 * 120.71987 * 359.43470 * 19 18 17 24 24 H 1.09003 * 109.47130 * 59.99799 * 1 2 3 25 25 H 1.09000 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47018 * 300.00073 * 1 2 3 27 27 H 1.09000 * 109.47018 * 239.99927 * 2 1 3 28 28 H 1.09003 * 109.47130 * 120.00201 * 2 1 3 29 29 H 1.09000 * 109.47104 * 59.99980 * 3 2 1 30 30 H 1.09003 * 109.47153 * 300.00187 * 3 2 1 31 31 H 0.96999 * 119.99852 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.41408 * 0.04139 * 16 15 13 33 33 H 1.07993 * 119.49988 * 179.97438 * 17 16 15 34 34 H 1.09013 * 109.46939 * 269.99534 * 21 20 19 35 35 H 1.09003 * 109.47026 * 150.00577 * 21 20 19 36 36 H 1.08993 * 109.47384 * 29.99953 * 21 20 19 37 37 H 1.09000 * 109.46856 * 269.99818 * 22 20 19 38 38 H 1.08995 * 109.46724 * 29.99824 * 22 20 19 39 39 H 1.09000 * 109.47223 * 150.00113 * 22 20 19 40 40 H 1.07999 * 120.53967 * 180.29706 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1886 1.5595 1.1798 6 1 5.0557 0.9429 1.3648 7 6 3.7667 2.4727 2.1405 8 7 4.2026 2.3750 3.3754 9 14 2.5804 3.8381 1.6740 10 1 1.1907 3.4114 1.9774 11 1 2.9034 5.0615 2.4513 12 1 2.7038 4.1267 0.2226 13 6 4.1793 1.3270 -1.1607 14 8 3.5750 1.3080 -2.2151 15 6 5.6558 1.2235 -1.1519 16 6 6.4178 1.8890 -0.1826 17 6 7.7913 1.7683 -0.2081 18 7 8.3922 1.0342 -1.1252 19 6 7.7147 0.3924 -2.0634 20 7 8.3979 -0.3629 -3.0099 21 6 7.6660 -0.9916 -4.1123 22 6 9.8495 -0.5301 -2.9047 23 6 6.3264 0.4607 -2.1096 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9087 3.0120 4.0453 32 1 5.9355 2.4887 0.5751 33 1 8.3839 2.2793 0.5362 34 1 7.3460 -1.9899 -3.8135 35 1 8.3153 -1.0643 -4.9848 36 1 6.7922 -0.3886 -4.3589 37 1 10.3479 0.2707 -3.4509 38 1 10.1444 -0.4931 -1.8561 39 1 10.1360 -1.4924 -3.3290 40 1 5.7760 -0.0680 -2.8738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299130357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:21 Heat of formation + Delta-G solvation = 25.698162 kcal Electronic energy + Delta-G solvation = -21962.935603 eV Core-core repulsion = 18778.724368 eV Total energy + Delta-G solvation = -3184.211235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00061 -38.62168 -36.07728 -35.41212 -33.25501 -31.98468 -31.46088 -29.88608 -28.10210 -26.21128 -25.35166 -24.66968 -22.88313 -21.49592 -21.11833 -19.20954 -17.86206 -16.62401 -16.12499 -15.72310 -15.16298 -15.07600 -14.86343 -14.35123 -14.15638 -14.01537 -13.59760 -13.47680 -13.06071 -12.83710 -12.49851 -12.43563 -12.28463 -12.00967 -11.92123 -11.69433 -11.54872 -11.12247 -11.04007 -10.90775 -10.46824 -10.11229 -9.86619 -9.48221 -9.36664 -9.18075 -9.03440 -8.57990 -7.84664 -7.11782 -6.55908 -4.20814 1.61653 1.99416 2.99606 3.15918 3.20102 3.24289 3.74544 4.03833 4.21331 4.57193 4.86303 4.96589 5.22522 5.34706 5.43160 5.50172 5.56021 5.60911 5.68728 5.73616 5.76621 5.81101 5.86630 5.97692 6.00196 6.18922 6.24909 6.30236 6.31850 6.37887 6.56175 6.69328 6.82400 7.05950 7.18927 7.25344 7.30238 7.74563 7.95856 8.15751 8.63996 8.81206 9.19457 9.53377 10.51618 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.005959 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.916863 B = 4697.326284 C = 5661.051770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.102 3.898 4 N -0.451 5.451 5 C -0.348 4.348 6 H 0.112 0.888 7 C 0.069 3.931 8 N -0.855 5.855 9 Si 0.874 3.126 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.259 1.259 13 C 0.519 3.481 14 O -0.589 6.589 15 C -0.017 4.017 16 C -0.170 4.170 17 C 0.120 3.880 18 N -0.539 5.539 19 C 0.379 3.621 20 N -0.627 5.627 21 C 0.099 3.901 22 C 0.108 3.892 23 C -0.195 4.195 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.277 0.723 32 H 0.171 0.829 33 H 0.153 0.847 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -3.797 -7.398 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.021 4.021 4 N -0.170 5.170 5 C -0.475 4.475 6 H 0.129 0.871 7 C -0.140 4.140 8 N -0.489 5.489 9 Si 0.701 3.299 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 C 0.308 3.692 14 O -0.475 6.475 15 C -0.028 4.028 16 C -0.192 4.192 17 C -0.035 4.035 18 N -0.257 5.257 19 C 0.146 3.854 20 N -0.345 5.345 21 C -0.044 4.044 22 C -0.035 4.035 23 C -0.221 4.221 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.188 0.812 33 H 0.171 0.829 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.249 -3.883 -7.777 9.676 hybrid contribution -1.470 0.727 0.109 1.644 sum 2.779 -3.156 -7.668 8.745 Atomic orbital electron populations 1.21704 0.96172 1.01159 1.01460 1.21776 0.95000 0.97766 1.02522 1.21710 0.82240 0.96844 1.01299 1.43563 1.04101 1.63322 1.06048 1.19222 1.14440 1.21999 0.91836 0.87054 1.25376 0.96869 0.97062 0.94666 1.69669 1.42888 1.35346 1.00989 0.86938 0.80887 0.81936 0.80135 1.19893 1.21179 1.18319 1.18234 0.86459 0.80772 0.83708 1.90626 1.69712 1.55951 1.31168 1.20050 0.94135 0.94968 0.93690 1.22982 0.94123 1.02206 0.99928 1.22354 0.92449 0.94244 0.94464 1.66903 1.41000 1.12203 1.05638 1.18044 0.87665 0.90752 0.88953 1.45983 1.06660 1.54869 1.26939 1.21612 0.97152 0.97375 0.88281 1.21406 0.79690 0.99516 1.02895 1.21393 0.92669 1.05535 1.02484 0.92955 0.92948 0.92931 0.91977 0.91281 0.91257 0.91413 0.91216 0.81218 0.82935 0.93429 0.91611 0.91071 0.94093 0.90733 0.92557 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.13 -2.50 6.22 -26.73 -0.17 -2.67 16 3 C 0.10 2.21 3.92 -4.05 -0.02 2.19 16 4 N -0.45 -10.71 2.11 -115.84 -0.24 -10.96 16 5 C -0.35 -8.61 6.61 -15.02 -0.10 -8.71 16 6 H 0.11 2.93 6.50 -52.49 -0.34 2.59 16 7 C 0.07 1.71 5.31 -17.45 -0.09 1.62 16 8 N -0.85 -22.26 13.95 55.50 0.77 -21.48 16 9 Si 0.87 19.68 24.88 -169.99 -4.23 15.45 16 10 H -0.27 -5.91 6.76 56.52 0.38 -5.53 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.52 12.39 7.39 -12.25 -0.09 12.30 16 14 O -0.59 -14.93 16.50 5.32 0.09 -14.84 16 15 C -0.02 -0.38 5.53 -104.68 -0.58 -0.96 16 16 C -0.17 -3.51 7.87 -39.00 -0.31 -3.82 16 17 C 0.12 2.21 11.16 -17.62 -0.20 2.02 16 18 N -0.54 -10.02 9.13 -12.49 -0.11 -10.14 16 19 C 0.38 6.90 7.37 -155.06 -1.14 5.76 16 20 N -0.63 -9.28 3.39 -189.69 -0.64 -9.92 16 21 C 0.10 1.15 10.05 59.85 0.60 1.76 16 22 C 0.11 1.31 10.42 59.85 0.62 1.94 16 23 C -0.20 -3.83 8.79 -38.76 -0.34 -4.17 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.52 3.78 -51.93 -0.20 1.32 16 30 H 0.07 1.47 7.54 -51.93 -0.39 1.08 16 31 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.17 3.75 5.57 -52.48 -0.29 3.46 16 33 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 34 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 36 H 0.07 0.87 6.38 -51.93 -0.33 0.54 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.99 7.44 -51.93 -0.39 0.60 16 39 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 40 H 0.13 2.43 6.24 -52.49 -0.33 2.10 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -29.01 324.43 -6.56 -35.57 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.64 Total: 6.06 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.44 Total: 5.36 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.23 Total: -52.50 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.84 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.23 Total: 15.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.01 -6.56 -35.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299130357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.271 kcal (2) G-P(sol) polarization free energy of solvation -29.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds