Wall clock time and date at job start Mon Mar 30 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47380 * 2 1 4 4 N 1.46496 * 109.47355 * 179.97438 * 3 2 1 5 5 C 1.36797 * 120.00305 * 264.33738 * 4 3 2 6 6 H 1.07999 * 119.99936 * 137.50223 * 5 4 3 7 7 C 1.39099 * 119.99927 * 317.50472 * 5 4 3 8 8 N 1.31323 * 119.99952 * 163.75367 * 7 5 4 9 9 Si 1.86799 * 119.99920 * 343.75141 * 7 5 4 10 10 H 1.48503 * 109.47030 * 94.89262 * 9 7 5 11 11 H 1.48507 * 109.46983 * 214.88999 * 9 7 5 12 12 H 1.48498 * 109.47205 * 334.89015 * 9 7 5 13 13 C 1.34780 * 119.99473 * 84.33444 * 4 3 2 14 14 O 1.21553 * 120.00354 * 4.64880 * 13 4 3 15 15 C 1.48012 * 119.99685 * 184.64330 * 13 4 3 16 16 C 1.40108 * 120.89168 * 326.72513 * 15 13 4 17 17 C 1.37904 * 119.16821 * 180.02562 * 16 15 13 18 18 N 1.31949 * 121.00492 * 359.72663 * 17 16 15 19 19 C 1.32337 * 121.96382 * 0.56522 * 18 17 16 20 20 N 1.39034 * 119.63683 * 179.70916 * 19 18 17 21 21 C 1.46504 * 119.99453 * 184.72937 * 20 19 18 22 22 C 1.46499 * 120.00397 * 4.72977 * 20 19 18 23 23 C 1.39075 * 120.71987 * 359.43470 * 19 18 17 24 24 H 1.09003 * 109.47130 * 59.99799 * 1 2 3 25 25 H 1.09000 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47018 * 300.00073 * 1 2 3 27 27 H 1.09000 * 109.47018 * 239.99927 * 2 1 3 28 28 H 1.09003 * 109.47130 * 120.00201 * 2 1 3 29 29 H 1.09000 * 109.47104 * 59.99980 * 3 2 1 30 30 H 1.09003 * 109.47153 * 300.00187 * 3 2 1 31 31 H 0.96999 * 119.99852 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.41408 * 0.04139 * 16 15 13 33 33 H 1.07993 * 119.49988 * 179.97438 * 17 16 15 34 34 H 1.09013 * 109.46939 * 269.99534 * 21 20 19 35 35 H 1.09003 * 109.47026 * 150.00577 * 21 20 19 36 36 H 1.08993 * 109.47384 * 29.99953 * 21 20 19 37 37 H 1.09000 * 109.46856 * 269.99818 * 22 20 19 38 38 H 1.08995 * 109.46724 * 29.99824 * 22 20 19 39 39 H 1.09000 * 109.47223 * 150.00113 * 22 20 19 40 40 H 1.07999 * 120.53967 * 180.29706 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1886 1.5595 1.1798 6 1 5.0557 0.9429 1.3648 7 6 3.7667 2.4727 2.1405 8 7 4.2026 2.3750 3.3754 9 14 2.5804 3.8381 1.6740 10 1 1.1907 3.4114 1.9774 11 1 2.9034 5.0615 2.4513 12 1 2.7038 4.1267 0.2226 13 6 4.1793 1.3270 -1.1607 14 8 3.5750 1.3080 -2.2151 15 6 5.6558 1.2235 -1.1519 16 6 6.4178 1.8890 -0.1826 17 6 7.7913 1.7683 -0.2081 18 7 8.3922 1.0342 -1.1252 19 6 7.7147 0.3924 -2.0634 20 7 8.3979 -0.3629 -3.0099 21 6 7.6660 -0.9916 -4.1123 22 6 9.8495 -0.5301 -2.9047 23 6 6.3264 0.4607 -2.1096 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9087 3.0120 4.0453 32 1 5.9355 2.4887 0.5751 33 1 8.3839 2.2793 0.5362 34 1 7.3460 -1.9899 -3.8135 35 1 8.3153 -1.0643 -4.9848 36 1 6.7922 -0.3886 -4.3589 37 1 10.3479 0.2707 -3.4509 38 1 10.1444 -0.4931 -1.8561 39 1 10.1360 -1.4924 -3.3290 40 1 5.7760 -0.0680 -2.8738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299130357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:20 Heat of formation + Delta-G solvation = 9.093799 kcal Electronic energy + Delta-G solvation = -21963.655622 eV Core-core repulsion = 18778.724368 eV Total energy + Delta-G solvation = -3184.931254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59912 -40.29635 -37.32779 -37.25777 -34.90514 -33.78191 -33.04891 -31.29124 -29.14470 -27.77106 -27.14299 -26.03148 -24.41362 -22.94319 -22.63743 -20.96789 -19.53755 -18.31072 -17.67295 -17.31479 -16.83724 -16.48386 -16.19267 -16.01550 -15.72141 -15.61098 -15.12854 -14.84080 -14.60904 -14.42453 -14.06081 -13.97976 -13.40918 -13.36286 -13.23468 -13.00682 -12.94649 -12.63186 -12.60008 -12.48012 -12.07806 -11.92304 -11.54397 -11.22134 -10.90626 -10.83827 -10.59566 -10.28436 -9.72410 -8.53674 -8.39193 -6.17057 0.00958 0.48162 1.18919 1.32184 1.41947 1.90838 2.06233 2.16414 2.49010 2.85419 3.11537 3.66225 3.84939 3.99185 4.09699 4.13899 4.21822 4.35626 4.36758 4.48629 4.52944 4.54653 4.59360 4.66632 4.80105 4.83732 4.90367 4.90852 4.97949 5.08205 5.08740 5.20678 5.27975 5.47440 5.52576 5.67433 6.03538 6.08484 6.20415 6.41035 6.88135 7.18418 7.28037 7.64083 8.60716 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.005959 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.916863 B = 4697.326284 C = 5661.051770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.095 3.905 4 N -0.459 5.459 5 C -0.340 4.340 6 H 0.090 0.910 7 C 0.041 3.959 8 N -0.886 5.886 9 Si 0.918 3.082 10 H -0.255 1.255 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.512 3.488 14 O -0.610 6.610 15 C -0.041 4.041 16 C -0.187 4.187 17 C 0.131 3.869 18 N -0.542 5.542 19 C 0.380 3.620 20 N -0.625 5.625 21 C 0.092 3.908 22 C 0.104 3.896 23 C -0.203 4.203 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.282 0.718 32 H 0.151 0.849 33 H 0.182 0.818 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 -4.395 -8.417 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.027 4.027 4 N -0.177 5.177 5 C -0.468 4.468 6 H 0.107 0.893 7 C -0.165 4.165 8 N -0.522 5.522 9 Si 0.744 3.256 10 H -0.180 1.180 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.303 3.697 14 O -0.497 6.497 15 C -0.051 4.051 16 C -0.210 4.210 17 C -0.024 4.024 18 N -0.260 5.260 19 C 0.146 3.854 20 N -0.341 5.341 21 C -0.050 4.050 22 C -0.038 4.038 23 C -0.228 4.228 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.168 0.832 33 H 0.199 0.801 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.613 -4.512 -8.816 10.926 hybrid contribution -1.450 0.829 0.320 1.701 sum 3.163 -3.683 -8.496 9.785 Atomic orbital electron populations 1.21677 0.92992 1.02987 1.02200 1.21709 0.97737 0.95502 1.01464 1.21868 0.81134 0.98719 1.00998 1.43687 1.05038 1.63321 1.05683 1.18982 1.14038 1.21703 0.92039 0.89280 1.25762 0.98113 0.98226 0.94426 1.69714 1.44376 1.36367 1.01731 0.86247 0.80415 0.80111 0.78869 1.18035 1.20604 1.19813 1.18634 0.87523 0.80129 0.83420 1.90585 1.70484 1.56946 1.31676 1.20067 0.93154 0.96672 0.95256 1.22759 0.95143 1.03182 0.99883 1.22721 0.91714 0.93436 0.94560 1.67063 1.40675 1.12439 1.05870 1.18295 0.87471 0.90441 0.89237 1.46376 1.07928 1.53454 1.26372 1.21849 0.97444 0.97267 0.88436 1.21591 0.77921 1.01701 1.02574 1.21453 0.93517 1.05643 1.02228 0.92079 0.90630 0.92318 0.92976 0.92329 0.91382 0.91653 0.90735 0.83172 0.80131 0.92378 0.88244 0.92107 0.93192 0.92045 0.89254 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.91 71.98 0.71 -3.32 16 2 C -0.13 -4.71 6.22 30.59 0.19 -4.52 16 3 C 0.09 4.13 3.92 86.38 0.34 4.46 16 4 N -0.46 -22.25 2.11 -638.68 -1.35 -23.60 16 5 C -0.34 -17.31 6.61 84.13 0.56 -16.75 16 6 H 0.09 4.90 6.50 -2.91 -0.02 4.88 16 7 C 0.04 2.05 5.31 84.98 0.45 2.50 16 8 N -0.89 -46.69 13.95 21.69 0.30 -46.39 16 9 Si 0.92 40.49 24.88 68.60 1.71 42.20 16 10 H -0.25 -10.47 6.76 99.48 0.67 -9.79 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.51 25.13 7.39 86.84 0.64 25.77 16 14 O -0.61 -31.51 16.50 -3.88 -0.06 -31.57 16 15 C -0.04 -1.82 5.53 -19.90 -0.11 -1.93 16 16 C -0.19 -7.92 7.87 22.64 0.18 -7.74 16 17 C 0.13 4.79 11.16 84.60 0.94 5.74 16 18 N -0.54 -19.56 9.13 -193.44 -1.77 -21.33 16 19 C 0.38 13.46 7.37 133.06 0.98 14.44 16 20 N -0.63 -17.07 3.39 -754.05 -2.56 -19.63 16 21 C 0.09 1.90 10.05 127.77 1.28 3.19 16 22 C 0.10 2.22 10.42 127.77 1.33 3.55 16 23 C -0.20 -7.97 8.79 22.80 0.20 -7.77 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.07 2.95 3.78 -2.39 -0.01 2.94 16 30 H 0.07 2.84 7.54 -2.39 -0.02 2.82 16 31 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.15 6.93 5.57 -2.91 -0.02 6.91 16 33 H 0.18 5.40 8.06 -2.91 -0.02 5.37 16 34 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.10 1.40 8.07 -2.39 -0.02 1.38 16 36 H 0.06 1.40 6.38 -2.39 -0.02 1.38 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.49 7.44 -2.39 -0.02 1.47 16 39 H 0.09 1.33 8.07 -2.39 -0.02 1.31 16 40 H 0.14 5.07 6.24 -2.91 -0.02 5.06 16 Total: -1.00 -62.70 324.43 4.98 -57.72 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 1.00 Total: 24.97 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 7.70 Total: 17.62 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -5.37 Total: -110.93 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.06 Total: -31.57 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 1.71 Total: 42.20 kcal Total: -62.70 4.98 -57.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299130357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.816 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds