Wall clock time and date at job start Mon Mar 30 2020 03:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47105 * 2 1 4 4 N 1.46497 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.36957 * 119.99824 * 263.84933 * 4 3 2 6 6 H 1.08004 * 119.99812 * 137.58938 * 5 4 3 7 7 C 1.38981 * 119.99674 * 317.58758 * 5 4 3 8 8 N 1.31403 * 120.00215 * 346.48047 * 7 5 4 9 9 Si 1.86798 * 119.99833 * 166.48346 * 7 5 4 10 10 H 1.48502 * 109.47431 * 59.99392 * 9 7 5 11 11 H 1.48493 * 109.47388 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46950 * 300.00015 * 9 7 5 13 13 C 1.34777 * 120.00316 * 83.84085 * 4 3 2 14 14 O 1.21657 * 119.99496 * 5.72600 * 13 4 3 15 15 C 1.47236 * 120.00280 * 185.72114 * 13 4 3 16 16 C 1.36677 * 126.20104 * 174.44146 * 15 13 4 17 17 N 1.35413 * 106.67125 * 179.97438 * 16 15 13 18 18 C 1.36378 * 107.77609 * 0.04244 * 17 16 15 19 19 N 1.29722 * 108.95144 * 359.96594 * 18 17 16 20 20 C 1.51111 * 123.82601 * 179.85079 * 18 17 16 21 21 C 1.53388 * 108.23215 * 344.10078 * 20 18 17 22 22 C 1.53134 * 109.26288 * 48.94327 * 21 20 18 23 23 C 1.46566 * 127.53855 * 180.11550 * 17 16 15 24 24 H 1.08990 * 109.47107 * 300.00157 * 1 2 3 25 25 H 1.09007 * 109.46535 * 60.00073 * 1 2 3 26 26 H 1.09001 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47017 * 239.99988 * 2 1 3 28 28 H 1.08997 * 109.46551 * 120.00061 * 2 1 3 29 29 H 1.08999 * 109.47370 * 59.99663 * 3 2 1 30 30 H 1.08996 * 109.46999 * 299.99751 * 3 2 1 31 31 H 0.96995 * 120.00282 * 180.02562 * 8 7 5 32 32 H 1.07995 * 126.66022 * 359.95051 * 16 15 13 33 33 H 1.09008 * 109.71763 * 224.40581 * 20 18 17 34 34 H 1.09000 * 109.72047 * 103.80137 * 20 18 17 35 35 H 1.09001 * 109.50505 * 168.87727 * 21 20 18 36 36 H 1.08997 * 109.50583 * 289.00143 * 21 20 18 37 37 H 1.08998 * 109.46436 * 50.21793 * 22 21 20 38 38 H 1.09003 * 109.46112 * 170.18721 * 22 21 20 39 39 H 1.08996 * 109.58693 * 42.99978 * 23 17 16 40 40 H 1.09003 * 109.57918 * 282.57570 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1903 1.5694 1.1784 6 1 5.0584 0.9553 1.3672 7 6 3.7684 2.4885 2.1318 8 7 2.8913 3.4127 1.8106 9 14 4.4485 2.4101 3.8698 10 1 5.9230 2.5826 3.8327 11 1 3.8443 3.4926 4.6871 12 1 4.1194 1.0927 4.4711 13 6 4.1785 1.3175 -1.1614 14 8 3.5743 1.3094 -2.2172 15 6 5.6454 1.1908 -1.1515 16 6 6.4423 0.9520 -2.2359 17 7 7.7168 0.9123 -1.7802 18 6 7.6842 1.1246 -0.4334 19 7 6.4521 1.2899 -0.0627 20 6 8.9142 1.1509 0.4440 21 6 10.0742 0.5204 -0.3366 22 6 10.1429 1.1461 -1.7326 23 6 8.9373 0.6867 -2.5597 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 2.5971 4.0543 2.4758 32 1 6.1183 0.8203 -3.2577 33 1 8.7294 0.5794 1.3537 34 1 9.1607 2.1812 0.7009 35 1 11.0102 0.7039 0.1909 36 1 9.9111 -0.5535 -0.4267 37 1 10.1302 2.2325 -1.6447 38 1 11.0628 0.8326 -2.2263 39 1 8.8903 1.2590 -3.4861 40 1 9.0339 -0.3748 -2.7879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330400510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:35 Heat of formation + Delta-G solvation = 2.125040 kcal Electronic energy + Delta-G solvation = -22125.026891 eV Core-core repulsion = 18939.793449 eV Total energy + Delta-G solvation = -3185.233442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.10970 -40.17874 -37.30099 -36.87287 -34.54891 -34.16394 -33.00151 -30.74681 -29.41149 -27.67043 -26.60154 -25.10372 -23.47824 -22.98177 -22.10215 -20.80340 -19.84595 -19.01198 -17.68149 -17.24778 -16.79423 -16.54858 -16.12778 -15.58051 -15.49205 -15.10888 -14.94012 -14.78875 -14.57548 -14.46030 -13.99803 -13.95244 -13.24598 -13.12032 -12.93755 -12.66049 -12.59396 -12.43277 -12.09327 -12.00268 -11.99122 -11.91302 -11.76864 -11.51767 -10.97900 -10.76934 -10.42206 -10.32476 -9.42785 -9.11714 -8.15655 -5.90643 0.79251 1.45705 1.48445 1.57547 1.72391 1.86536 2.40779 2.81093 3.04887 3.22103 3.47246 3.73139 3.78676 3.86850 4.15828 4.16588 4.30426 4.38427 4.44166 4.50098 4.53578 4.60586 4.70437 4.83072 4.90019 4.95676 5.01077 5.02255 5.08945 5.13773 5.23209 5.29257 5.35086 5.36252 5.54106 5.62050 5.83563 6.17315 6.32103 6.71306 7.11488 7.31933 7.69503 8.08918 8.89317 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.006541 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.339575 B = 4279.384527 C = 5551.456732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.121 3.879 4 N -0.438 5.438 5 C -0.313 4.313 6 H 0.112 0.888 7 C -0.011 4.011 8 N -0.915 5.915 9 Si 0.985 3.015 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.528 3.472 14 O -0.641 6.641 15 C -0.066 4.066 16 C 0.016 3.984 17 N -0.453 5.453 18 C 0.184 3.816 19 N -0.466 5.466 20 C -0.034 4.034 21 C -0.115 4.115 22 C -0.128 4.128 23 C 0.092 3.908 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.265 0.735 32 H 0.196 0.804 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.601 -6.748 -3.641 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C -0.003 4.003 4 N -0.153 5.153 5 C -0.442 4.442 6 H 0.129 0.871 7 C -0.211 4.211 8 N -0.554 5.554 9 Si 0.809 3.191 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.318 3.682 14 O -0.530 6.530 15 C -0.195 4.195 16 C -0.123 4.123 17 N -0.135 5.135 18 C -0.080 4.080 19 N -0.186 5.186 20 C -0.073 4.073 21 C -0.153 4.153 22 C -0.166 4.166 23 C -0.028 4.028 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.213 0.787 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.025 -6.466 -3.309 16.688 hybrid contribution -0.225 0.359 -0.167 0.455 sum 14.800 -6.106 -3.475 16.383 Atomic orbital electron populations 1.21599 0.93180 1.02473 1.01844 1.21740 0.97599 0.96549 1.00339 1.21370 0.81265 0.96262 1.01368 1.43601 1.05224 1.60837 1.05658 1.20197 1.12001 1.19743 0.92237 0.87075 1.26309 0.97201 0.93500 1.04051 1.70036 1.33705 1.16092 1.35608 0.85122 0.78852 0.77819 0.77352 1.19051 1.21011 1.19098 1.17832 0.85963 0.80704 0.83684 1.90534 1.70261 1.60187 1.32066 1.20608 0.93828 1.14122 0.90949 1.22547 0.83574 1.06202 1.00019 1.45724 1.06820 1.52415 1.08591 1.24614 0.95832 1.04471 0.83054 1.70775 1.00347 1.18226 1.29210 1.20416 0.87115 1.03531 0.96207 1.21671 0.97987 1.00242 0.95415 1.21931 0.97357 1.01602 0.95682 1.22479 0.80988 1.03970 0.95372 0.92428 0.92847 0.90648 0.94244 0.92724 0.89358 0.95220 0.92534 0.78720 0.89063 0.89089 0.87302 0.90972 0.91278 0.85773 0.87755 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.91 71.98 0.71 -3.98 16 2 C -0.12 -5.57 6.21 30.60 0.19 -5.38 16 3 C 0.12 6.55 4.88 86.38 0.42 6.97 16 4 N -0.44 -25.58 2.50 -639.45 -1.60 -27.18 16 5 C -0.31 -18.15 7.97 84.07 0.67 -17.48 16 6 H 0.11 6.44 5.78 -2.91 -0.02 6.43 16 7 C -0.01 -0.64 5.05 84.94 0.43 -0.21 16 8 N -0.91 -54.13 11.43 21.67 0.25 -53.88 16 9 Si 0.98 44.39 29.57 68.60 2.03 46.42 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 C 0.53 30.52 7.57 86.61 0.66 31.18 16 14 O -0.64 -38.53 16.54 -4.21 -0.07 -38.60 16 15 C -0.07 -3.33 6.71 40.52 0.27 -3.06 16 16 C 0.02 0.63 11.36 83.78 0.95 1.58 16 17 N -0.45 -13.78 3.13 -512.18 -1.60 -15.39 16 18 C 0.18 6.54 7.65 138.05 1.06 7.59 16 19 N -0.47 -22.19 8.00 -176.08 -1.41 -23.59 16 20 C -0.03 -0.81 6.33 30.11 0.19 -0.62 16 21 C -0.12 -1.59 5.95 30.77 0.18 -1.41 16 22 C -0.13 -1.52 5.93 30.72 0.18 -1.34 16 23 C 0.09 1.54 6.96 86.45 0.60 2.14 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.09 5.02 5.70 -2.39 -0.01 5.01 16 30 H 0.03 1.68 7.53 -2.39 -0.02 1.66 16 31 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.20 6.65 8.06 -2.91 -0.02 6.63 16 33 H 0.09 2.21 8.14 -2.38 -0.02 2.20 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 37 H 0.07 0.96 8.11 -2.39 -0.02 0.94 16 38 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -80.47 326.16 5.14 -75.33 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 1.03 Total: 20.90 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 6.52 Total: 15.99 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -4.36 Total: -120.04 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.07 Total: -38.60 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -80.47 5.14 -75.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330400510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.458 kcal (2) G-P(sol) polarization free energy of solvation -80.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds