Wall clock time and date at job start Mon Mar 30 2020 02:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47040 * 2 1 4 4 H 1.08994 * 109.47423 * 305.00512 * 3 2 1 5 5 C 1.50704 * 109.47204 * 185.00192 * 3 2 1 6 6 H 1.07993 * 120.00016 * 240.00129 * 5 3 2 7 7 C 1.37874 * 120.00024 * 60.00143 * 5 3 2 8 8 N 1.31518 * 119.99881 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47175 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46784 * 119.99869 * 9 7 5 12 12 H 1.48498 * 109.47462 * 240.00044 * 9 7 5 13 13 N 1.46498 * 109.46811 * 65.00515 * 3 2 1 14 14 C 1.30200 * 120.00080 * 234.01772 * 13 3 2 15 15 O 1.35260 * 120.00500 * 174.01468 * 14 13 3 16 16 C 1.47655 * 119.99449 * 354.01686 * 14 13 3 17 17 C 1.36392 * 126.12194 * 133.11920 * 16 14 13 18 18 N 1.35631 * 106.63233 * 179.97438 * 17 16 14 19 19 C 1.36230 * 107.64031 * 0.05769 * 18 17 16 20 20 N 1.29830 * 108.86364 * 359.93028 * 19 18 17 21 21 C 1.51095 * 123.87939 * 179.88037 * 19 18 17 22 22 C 1.53405 * 108.18180 * 343.97079 * 21 19 18 23 23 C 1.53139 * 109.25267 * 48.99587 * 22 21 19 24 24 C 1.46525 * 127.65640 * 180.02562 * 18 17 16 25 25 H 1.08989 * 109.47270 * 59.99648 * 1 2 3 26 26 H 1.08997 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46902 * 299.99648 * 1 2 3 28 28 H 1.09000 * 109.47165 * 240.00620 * 2 1 3 29 29 H 1.08997 * 109.47717 * 119.99924 * 2 1 3 30 30 H 0.97004 * 120.00010 * 180.02562 * 8 7 5 31 31 H 0.96704 * 113.99725 * 359.97438 * 15 14 13 32 32 H 1.07997 * 126.67780 * 0.02562 * 17 16 14 33 33 H 1.09005 * 109.72074 * 103.68722 * 21 19 18 34 34 H 1.08997 * 109.72064 * 224.29847 * 21 19 18 35 35 H 1.09006 * 109.52510 * 289.05884 * 22 21 19 36 36 H 1.08991 * 109.50710 * 168.92372 * 22 21 19 37 37 H 1.08997 * 109.46361 * 170.21578 * 23 22 21 38 38 H 1.09006 * 109.45403 * 50.25114 * 23 22 21 39 39 H 1.09004 * 109.58386 * 43.09489 * 24 18 17 40 40 H 1.08999 * 109.59274 * 282.67137 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8786 -1.2280 8 7 3.4061 0.3377 -2.1734 9 14 6.0049 0.8815 -1.3820 10 1 6.5988 1.5464 -0.1944 11 1 6.4970 -0.5173 -1.4632 12 1 6.3989 1.6169 -2.6104 13 7 1.6525 2.0974 1.2519 14 6 0.9968 3.2219 1.2225 15 8 0.5335 3.7649 2.3715 16 6 0.7588 3.9042 -0.0651 17 6 -0.4283 4.4214 -0.4936 18 7 -0.1999 4.9529 -1.7204 19 6 1.1139 4.7518 -2.0194 20 7 1.6787 4.1282 -1.0306 21 6 1.7625 5.1999 -3.3083 22 6 0.6520 5.5169 -4.3181 23 6 -0.3895 6.4231 -3.6554 24 6 -1.1611 5.6275 -2.5968 25 1 -0.3633 0.5138 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0608 -2.9501 31 1 0.7376 3.2464 3.1618 32 1 -1.3670 4.4105 0.0403 33 1 2.3619 6.0923 -3.1276 34 1 2.3969 4.4034 -3.6971 35 1 0.1764 4.5901 -4.6393 36 1 1.0799 6.0254 -5.1819 37 1 -1.0839 6.7911 -4.4107 38 1 0.1124 7.2669 -3.1817 39 1 -1.7786 6.3060 -2.0081 40 1 -1.7931 4.8860 -3.0855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330415647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:17 Heat of formation + Delta-G solvation = 31.899262 kcal Electronic energy + Delta-G solvation = -22338.434545 eV Core-core repulsion = 19154.492210 eV Total energy + Delta-G solvation = -3183.942335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.87967 -37.86697 -36.34015 -35.14579 -33.03481 -32.03795 -30.85638 -29.30789 -28.31381 -26.62679 -24.41219 -23.07468 -22.14627 -22.03582 -20.23945 -18.96088 -18.70539 -16.78479 -16.22339 -16.16705 -15.52727 -15.10974 -14.39428 -14.22816 -14.10623 -13.81601 -13.51888 -13.25800 -13.18796 -12.97100 -12.63703 -12.04844 -11.99760 -11.56164 -11.22010 -11.09872 -11.05362 -11.02318 -10.75891 -10.65100 -10.09110 -9.73908 -9.60295 -9.47184 -9.43834 -9.02063 -8.43929 -8.15268 -7.78547 -7.50175 -5.80589 -3.81240 2.25744 2.97165 3.12917 3.41257 3.47585 3.54957 3.77782 4.26694 4.39253 4.54102 4.60277 4.65294 4.84866 5.10295 5.21906 5.33085 5.38583 5.49990 5.55264 5.65519 5.79656 5.80328 5.94974 6.12528 6.19791 6.31652 6.40131 6.48810 6.61214 6.63015 7.05476 7.08455 7.34887 7.49193 7.55672 7.81498 8.05532 8.13291 8.35654 8.59363 8.61922 9.07871 9.30891 9.80181 11.25843 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.007300 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.429839 B = 3834.611901 C = 4882.828064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C 0.216 3.784 4 H 0.038 0.962 5 C -0.475 4.475 6 H 0.054 0.946 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.541 5.541 14 C 0.369 3.631 15 O -0.488 6.488 16 C 0.025 3.975 17 C -0.021 4.021 18 N -0.462 5.462 19 C 0.202 3.798 20 N -0.417 5.417 21 C -0.032 4.032 22 C -0.125 4.125 23 C -0.133 4.133 24 C 0.106 3.894 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.098 0.902 29 H 0.037 0.963 30 H 0.256 0.744 31 H 0.398 0.602 32 H 0.175 0.825 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 11.606 -3.640 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.055 0.945 5 C -0.514 4.514 6 H 0.072 0.928 7 C -0.140 4.140 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.272 5.272 14 C 0.138 3.862 15 O -0.284 6.284 16 C -0.106 4.106 17 C -0.157 4.157 18 N -0.147 5.147 19 C -0.060 4.060 20 N -0.135 5.135 21 C -0.070 4.070 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.017 4.017 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.116 0.884 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.251 0.749 32 H 0.192 0.808 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.190 11.176 -3.617 15.551 hybrid contribution 0.061 0.120 -0.328 0.355 sum -10.129 11.296 -3.946 15.677 Atomic orbital electron populations 1.21782 0.99676 0.98884 0.99582 1.21609 0.91302 0.99524 1.02441 1.19339 0.95628 0.90161 0.83949 0.94493 1.20985 0.90318 1.35588 1.04522 0.92779 1.24812 0.97746 0.95764 0.95645 1.69899 1.34255 1.39919 1.09614 0.86514 0.86213 0.77281 0.77817 1.19973 1.21337 1.21232 1.71964 1.10441 1.08650 1.36156 1.20175 0.92972 0.90292 0.82765 1.84775 1.75659 1.52060 1.15865 1.19132 0.90212 1.06246 0.94987 1.22445 1.01074 1.04358 0.87852 1.45379 1.10288 1.44205 1.14810 1.23476 0.81025 1.02664 0.98880 1.70453 1.30531 1.12751 0.99779 1.20163 0.96871 1.02424 0.87585 1.21670 0.96206 1.00187 0.98197 1.21880 0.98839 0.98655 0.97693 1.21917 0.91248 0.96495 0.92027 0.94537 0.94905 0.94507 0.88421 0.94422 0.93456 0.74874 0.80761 0.89655 0.88241 0.91059 0.90223 0.89652 0.90695 0.89551 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.80 37.16 0.36 -2.79 16 2 C -0.11 -2.89 5.45 -26.73 -0.15 -3.04 16 3 C 0.22 5.97 1.90 -69.08 -0.13 5.84 16 4 H 0.04 1.10 5.26 -51.93 -0.27 0.83 16 5 C -0.48 -14.25 8.84 -34.44 -0.30 -14.55 16 6 H 0.05 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.90 -26.52 11.29 55.43 0.63 -25.90 16 9 Si 0.89 22.74 29.54 -169.99 -5.02 17.72 16 10 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 N -0.54 -13.49 9.53 -53.93 -0.51 -14.01 16 14 C 0.37 8.14 8.02 -14.40 -0.12 8.02 16 15 O -0.49 -8.73 13.58 -17.47 -0.24 -8.97 16 16 C 0.03 0.54 5.48 -83.19 -0.46 0.09 16 17 C -0.02 -0.35 11.58 -16.54 -0.19 -0.55 16 18 N -0.46 -7.09 3.13 -113.30 -0.36 -7.44 16 19 C 0.20 3.72 7.65 -154.68 -1.18 2.53 16 20 N -0.42 -9.65 9.61 -7.11 -0.07 -9.72 16 21 C -0.03 -0.45 6.33 -27.48 -0.17 -0.62 16 22 C -0.12 -1.25 5.95 -26.45 -0.16 -1.41 16 23 C -0.13 -1.09 5.94 -26.52 -0.16 -1.25 16 24 C 0.11 1.04 6.97 -3.89 -0.03 1.01 16 25 H 0.04 0.81 8.14 -51.94 -0.42 0.39 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.78 7.75 -51.92 -0.40 0.38 16 28 H 0.10 2.79 5.95 -51.93 -0.31 2.48 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.40 5.64 8.97 45.56 0.41 6.05 16 32 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -35.80 328.83 -8.58 -44.38 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.19 Total: 4.04 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.77 Total: -5.06 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.31 Total: -57.07 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.24 Total: -8.97 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.80 -8.58 -44.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330415647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.277 kcal (2) G-P(sol) polarization free energy of solvation -35.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds