Wall clock time and date at job start Mon Mar 30 2020 02:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47040 * 2 1 4 4 H 1.08994 * 109.47423 * 305.00512 * 3 2 1 5 5 C 1.50704 * 109.47204 * 185.00192 * 3 2 1 6 6 H 1.07993 * 120.00016 * 240.00129 * 5 3 2 7 7 C 1.37874 * 120.00024 * 60.00143 * 5 3 2 8 8 N 1.31518 * 119.99881 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47175 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46784 * 119.99869 * 9 7 5 12 12 H 1.48498 * 109.47462 * 240.00044 * 9 7 5 13 13 N 1.46498 * 109.46811 * 65.00515 * 3 2 1 14 14 C 1.30200 * 120.00080 * 234.01772 * 13 3 2 15 15 O 1.35260 * 120.00500 * 174.01468 * 14 13 3 16 16 C 1.47655 * 119.99449 * 354.01686 * 14 13 3 17 17 C 1.36392 * 126.12194 * 133.11920 * 16 14 13 18 18 N 1.35631 * 106.63233 * 179.97438 * 17 16 14 19 19 C 1.36230 * 107.64031 * 0.05769 * 18 17 16 20 20 N 1.29830 * 108.86364 * 359.93028 * 19 18 17 21 21 C 1.51095 * 123.87939 * 179.88037 * 19 18 17 22 22 C 1.53405 * 108.18180 * 343.97079 * 21 19 18 23 23 C 1.53139 * 109.25267 * 48.99587 * 22 21 19 24 24 C 1.46525 * 127.65640 * 180.02562 * 18 17 16 25 25 H 1.08989 * 109.47270 * 59.99648 * 1 2 3 26 26 H 1.08997 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46902 * 299.99648 * 1 2 3 28 28 H 1.09000 * 109.47165 * 240.00620 * 2 1 3 29 29 H 1.08997 * 109.47717 * 119.99924 * 2 1 3 30 30 H 0.97004 * 120.00010 * 180.02562 * 8 7 5 31 31 H 0.96704 * 113.99725 * 359.97438 * 15 14 13 32 32 H 1.07997 * 126.67780 * 0.02562 * 17 16 14 33 33 H 1.09005 * 109.72074 * 103.68722 * 21 19 18 34 34 H 1.08997 * 109.72064 * 224.29847 * 21 19 18 35 35 H 1.09006 * 109.52510 * 289.05884 * 22 21 19 36 36 H 1.08991 * 109.50710 * 168.92372 * 22 21 19 37 37 H 1.08997 * 109.46361 * 170.21578 * 23 22 21 38 38 H 1.09006 * 109.45403 * 50.25114 * 23 22 21 39 39 H 1.09004 * 109.58386 * 43.09489 * 24 18 17 40 40 H 1.08999 * 109.59274 * 282.67137 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8786 -1.2280 8 7 3.4061 0.3377 -2.1734 9 14 6.0049 0.8815 -1.3820 10 1 6.5988 1.5464 -0.1944 11 1 6.4970 -0.5173 -1.4632 12 1 6.3989 1.6169 -2.6104 13 7 1.6525 2.0974 1.2519 14 6 0.9968 3.2219 1.2225 15 8 0.5335 3.7649 2.3715 16 6 0.7588 3.9042 -0.0651 17 6 -0.4283 4.4214 -0.4936 18 7 -0.1999 4.9529 -1.7204 19 6 1.1139 4.7518 -2.0194 20 7 1.6787 4.1282 -1.0306 21 6 1.7625 5.1999 -3.3083 22 6 0.6520 5.5169 -4.3181 23 6 -0.3895 6.4231 -3.6554 24 6 -1.1611 5.6275 -2.5968 25 1 -0.3633 0.5138 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0608 -2.9501 31 1 0.7376 3.2464 3.1618 32 1 -1.3670 4.4105 0.0403 33 1 2.3619 6.0923 -3.1276 34 1 2.3969 4.4034 -3.6971 35 1 0.1764 4.5901 -4.6393 36 1 1.0799 6.0254 -5.1819 37 1 -1.0839 6.7911 -4.4107 38 1 0.1124 7.2669 -3.1817 39 1 -1.7786 6.3060 -2.0081 40 1 -1.7931 4.8860 -3.0855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330415647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:17 Heat of formation + Delta-G solvation = 4.275679 kcal Electronic energy + Delta-G solvation = -22339.632393 eV Core-core repulsion = 19154.492210 eV Total energy + Delta-G solvation = -3185.140183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.19169 -39.44043 -37.44241 -36.97261 -34.30599 -34.01167 -32.70192 -30.55124 -29.56994 -28.64797 -25.64178 -24.92528 -23.65196 -23.08106 -22.01214 -20.59086 -19.84865 -18.43196 -18.01480 -17.80952 -16.85626 -16.42593 -16.22283 -15.67387 -15.16813 -15.09859 -14.93300 -14.75243 -14.53409 -14.41278 -14.06248 -13.88310 -13.67734 -13.11944 -12.80148 -12.79544 -12.63147 -12.14169 -12.03192 -11.96051 -11.85805 -11.71987 -11.61968 -11.38540 -10.95590 -10.55074 -10.43346 -9.96927 -9.67348 -9.07296 -8.03157 -6.11833 0.87269 1.36188 1.36798 1.48671 1.56525 1.87352 2.24320 2.47330 2.76103 3.23219 3.53078 3.68056 3.77792 3.84696 4.08494 4.16704 4.39714 4.44354 4.47326 4.53607 4.57345 4.58191 4.72480 4.86896 4.95815 4.98700 5.03205 5.09470 5.17425 5.27356 5.30642 5.33053 5.48620 5.62547 5.69554 5.90782 6.09430 6.30343 6.41224 6.61446 6.93470 7.20814 7.39971 7.58504 9.01446 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.007300 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.429839 B = 3834.611901 C = 4882.828064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.108 4.108 3 C 0.229 3.771 4 H 0.015 0.985 5 C -0.499 4.499 6 H 0.027 0.973 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.276 1.276 13 N -0.581 5.581 14 C 0.388 3.612 15 O -0.472 6.472 16 C -0.035 4.035 17 C 0.007 3.993 18 N -0.451 5.451 19 C 0.191 3.809 20 N -0.484 5.484 21 C -0.035 4.035 22 C -0.117 4.117 23 C -0.126 4.126 24 C 0.093 3.907 25 H 0.029 0.971 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.259 0.741 31 H 0.414 0.586 32 H 0.212 0.788 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.174 13.365 -4.637 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.121 3.879 4 H 0.033 0.967 5 C -0.538 4.538 6 H 0.046 0.954 7 C -0.179 4.179 8 N -0.555 5.555 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.202 1.202 13 N -0.313 5.313 14 C 0.158 3.842 15 O -0.269 6.269 16 C -0.165 4.165 17 C -0.132 4.132 18 N -0.134 5.134 19 C -0.073 4.073 20 N -0.203 5.203 21 C -0.074 4.074 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.027 4.027 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.270 0.730 32 H 0.229 0.771 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.135 0.865 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.325 12.960 -4.614 18.471 hybrid contribution 0.628 -0.298 0.004 0.695 sum -11.697 12.662 -4.610 17.844 Atomic orbital electron populations 1.21582 0.96524 1.00511 0.99590 1.21470 0.94150 0.98716 1.00351 1.18982 0.93916 0.90524 0.84527 0.96739 1.21150 0.92120 1.36147 1.04360 0.95448 1.25494 1.01976 0.95266 0.95197 1.70005 1.35770 1.39927 1.09788 0.85612 0.81136 0.77789 0.77668 1.20533 1.19995 1.20201 1.71874 1.14057 1.10864 1.34553 1.20483 0.90388 0.89143 0.84165 1.84771 1.74805 1.51736 1.15624 1.19297 0.92164 1.09693 0.95323 1.22885 1.00718 1.01450 0.88142 1.45705 1.10157 1.42940 1.14583 1.24028 0.82420 1.01844 0.98969 1.70297 1.33189 1.15159 1.01690 1.20336 0.98208 1.01676 0.87143 1.21670 0.95356 1.00644 0.97838 1.21918 0.98749 0.97711 0.97916 1.22476 0.90723 0.97328 0.92187 0.95193 0.92382 0.93639 0.91203 0.95545 0.93176 0.72971 0.77103 0.88469 0.91272 0.92003 0.87521 0.85760 0.90525 0.86469 0.88610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 9.80 71.98 0.71 -4.83 16 2 C -0.11 -5.87 5.45 30.60 0.17 -5.70 16 3 C 0.23 13.15 1.90 44.25 0.08 13.23 16 4 H 0.02 0.93 5.26 -2.39 -0.01 0.91 16 5 C -0.50 -31.40 8.84 25.60 0.23 -31.18 16 6 H 0.03 1.80 7.81 -2.91 -0.02 1.78 16 7 C 0.02 1.12 5.29 84.65 0.45 1.57 16 8 N -0.91 -55.85 11.29 21.45 0.24 -55.61 16 9 Si 0.95 48.05 29.54 68.60 2.03 50.07 16 10 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 11 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 N -0.58 -29.91 9.53 -438.66 -4.18 -34.10 16 14 C 0.39 17.35 8.02 87.42 0.70 18.06 16 15 O -0.47 -16.50 13.58 -85.44 -1.16 -17.66 16 16 C -0.04 -1.54 5.48 40.68 0.22 -1.31 16 17 C 0.01 0.24 11.58 83.67 0.97 1.21 16 18 N -0.45 -12.96 3.13 -512.36 -1.61 -14.57 16 19 C 0.19 7.07 7.65 138.06 1.06 8.12 16 20 N -0.48 -23.22 9.61 -176.40 -1.70 -24.92 16 21 C -0.03 -0.99 6.33 30.11 0.19 -0.80 16 22 C -0.12 -2.07 5.95 30.78 0.18 -1.88 16 23 C -0.13 -1.53 5.94 30.73 0.18 -1.35 16 24 C 0.09 1.45 6.97 86.46 0.60 2.05 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 27 H 0.04 1.91 7.75 -2.38 -0.02 1.89 16 28 H 0.07 4.14 5.95 -2.39 -0.01 4.13 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 31 H 0.41 11.38 8.97 -74.05 -0.66 10.72 16 32 H 0.21 5.06 8.06 -2.91 -0.02 5.03 16 33 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 1.22 8.12 -2.38 -0.02 1.20 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.97 8.11 -2.38 -0.02 0.95 16 39 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -83.27 328.83 -0.26 -83.52 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.38 Total: 16.06 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.74 Total: -2.81 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -7.24 Total: -129.18 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -1.16 Total: -17.66 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.07 kcal Total: -83.27 -0.26 -83.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330415647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.797 kcal (2) G-P(sol) polarization free energy of solvation -83.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds