Wall clock time and date at job start Mon Mar 30 2020 02:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 H 1.08994 * 109.47503 * 305.69336 * 3 2 1 5 5 C 1.50706 * 109.46841 * 185.69009 * 3 2 1 6 6 H 1.08001 * 119.99921 * 275.00467 * 5 3 2 7 7 C 1.37875 * 119.99559 * 95.01216 * 5 3 2 8 8 N 1.31515 * 119.99659 * 184.82842 * 7 5 3 9 9 Si 1.86795 * 120.00431 * 4.82199 * 7 5 3 10 10 H 1.48501 * 109.47295 * 84.86336 * 9 7 5 11 11 H 1.48499 * 109.47360 * 204.86598 * 9 7 5 12 12 H 1.48499 * 109.46939 * 324.86620 * 9 7 5 13 13 N 1.46506 * 109.46841 * 65.69424 * 3 2 1 14 14 C 1.34769 * 119.99900 * 274.99720 * 13 3 2 15 15 O 1.21288 * 119.99985 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99952 * 180.02562 * 14 13 3 17 17 H 1.08993 * 109.49694 * 299.92966 * 16 14 13 18 18 C 1.53502 * 109.43552 * 179.86832 * 16 14 13 19 19 C 1.53286 * 109.50319 * 170.19073 * 18 16 14 20 20 N 1.46472 * 108.82447 * 50.72818 * 19 18 16 21 21 C 1.34410 * 128.44641 * 162.60636 * 20 19 18 22 22 N 1.30778 * 108.55304 * 180.14977 * 21 20 19 23 23 C 1.34420 * 109.32436 * 359.94690 * 22 21 20 24 24 C 1.33860 * 107.79761 * 359.97438 * 23 22 21 25 25 C 1.50711 * 128.68358 * 180.14645 * 24 23 22 26 26 H 1.09004 * 109.46595 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46880 * 299.99546 * 1 2 3 28 28 H 1.09000 * 109.47156 * 60.00209 * 1 2 3 29 29 H 1.09004 * 109.47343 * 240.00352 * 2 1 3 30 30 H 1.09000 * 109.47156 * 119.99791 * 2 1 3 31 31 H 0.97003 * 120.00180 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99655 * 94.99981 * 13 3 2 33 33 H 1.09000 * 109.62933 * 50.12437 * 18 16 14 34 34 H 1.08994 * 109.43178 * 290.14036 * 18 16 14 35 35 H 1.08998 * 109.60288 * 290.88261 * 19 18 16 36 36 H 1.09004 * 109.59559 * 170.56758 * 19 18 16 37 37 H 1.08001 * 125.71971 * 0.14316 * 21 20 19 38 38 H 1.08001 * 126.10475 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.74684 * 283.84043 * 25 24 23 40 40 H 1.09000 * 109.74253 * 44.50301 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9850 -0.8346 5 6 3.5404 1.4448 -0.1409 6 1 4.1650 1.3333 0.7331 7 6 4.1157 1.5895 -1.3855 8 7 5.4204 1.4965 -1.5216 9 14 3.0419 1.9172 -2.8785 10 1 2.7753 3.3741 -2.9863 11 1 3.7402 1.4498 -4.1028 12 1 1.7563 1.1883 -2.7331 13 7 1.6667 2.0924 1.2589 14 6 0.4508 2.6588 1.3901 15 8 -0.3345 2.6300 0.4663 16 6 0.0670 3.3277 2.6849 17 1 0.1063 2.6005 3.4957 18 6 -1.3569 3.8888 2.5674 19 6 -1.8410 4.3493 3.9470 20 7 -0.8240 5.2225 4.5374 21 6 -0.9547 6.0856 5.5595 22 7 0.1989 6.6669 5.7635 23 6 1.0972 6.1938 4.8826 24 6 0.4782 5.2918 4.1112 25 6 1.0437 4.4746 2.9782 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8252 1.5979 -2.3974 32 1 2.2947 2.1150 1.9978 33 1 -2.0250 3.1155 2.1882 34 1 -1.3575 4.7359 1.8815 35 1 -1.9954 3.4819 4.5887 36 1 -2.7772 4.8975 3.8417 37 1 -1.8606 6.2683 6.1185 38 1 2.1336 6.4889 4.8100 39 1 1.1533 5.0998 2.0921 40 1 2.0141 4.0694 3.2651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330875832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:58 Heat of formation + Delta-G solvation = -11.468261 kcal Electronic energy + Delta-G solvation = -21934.786120 eV Core-core repulsion = 18748.963228 eV Total energy + Delta-G solvation = -3185.822892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.25434 -40.93668 -37.62204 -36.62613 -34.48372 -34.14220 -32.82657 -31.42276 -29.67215 -28.64634 -25.71100 -24.79037 -23.77501 -22.41462 -21.75350 -21.17449 -20.05747 -19.17772 -18.11772 -17.69229 -17.26175 -16.66240 -16.37108 -16.00331 -15.22090 -15.00608 -14.96956 -14.78699 -14.74166 -14.55353 -14.04274 -13.81437 -13.77734 -13.63284 -12.98519 -12.91531 -12.82010 -12.55408 -12.32160 -12.11778 -12.02609 -11.86794 -11.66222 -11.19285 -10.98922 -10.83008 -10.54909 -10.41427 -9.67773 -9.29190 -8.38317 -6.43741 1.13863 1.28510 1.33636 1.43273 1.78369 1.92158 2.21148 2.26811 2.45384 3.02845 3.45317 3.60438 3.68387 3.79568 3.96534 4.13929 4.22197 4.31513 4.33772 4.43611 4.47680 4.51851 4.60848 4.72333 4.77196 4.84351 4.88262 4.97826 5.11651 5.15602 5.27112 5.29131 5.42949 5.43524 5.57513 5.78633 5.80392 6.13952 6.36879 6.62392 6.93890 7.13757 7.22522 7.49689 8.76768 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.004712 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.720773 B = 5940.803224 C = 6561.587549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.241 3.759 4 H 0.030 0.970 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.254 1.254 13 N -0.702 5.702 14 C 0.508 3.492 15 O -0.581 6.581 16 C -0.100 4.100 17 H 0.118 0.882 18 C -0.109 4.109 19 C 0.107 3.893 20 N -0.456 5.456 21 C 0.188 3.812 22 N -0.539 5.539 23 C -0.046 4.046 24 C -0.023 4.023 25 C -0.032 4.032 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.269 0.731 32 H 0.404 0.596 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.241 0.759 38 H 0.172 0.828 39 H 0.073 0.927 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 3.850 12.122 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.163 4.163 3 C 0.137 3.863 4 H 0.048 0.952 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.749 3.251 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.178 1.178 13 N -0.350 5.350 14 C 0.295 3.705 15 O -0.462 6.462 16 C -0.122 4.122 17 H 0.136 0.864 18 C -0.148 4.148 19 C -0.014 4.014 20 N -0.140 5.140 21 C -0.095 4.095 22 N -0.258 5.258 23 C -0.193 4.193 24 C -0.138 4.138 25 C -0.071 4.071 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.257 0.743 38 H 0.189 0.811 39 H 0.092 0.908 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.120 4.317 11.876 20.482 hybrid contribution 0.474 -0.352 -1.353 1.476 sum -15.646 3.965 10.523 19.268 Atomic orbital electron populations 1.21768 0.95626 1.00296 1.01302 1.21990 0.95185 0.98012 1.01134 1.18890 0.93079 0.90292 0.83993 0.95212 1.21238 0.90467 1.50199 0.94474 0.92575 1.25576 0.95646 0.94045 1.01336 1.69982 1.11282 1.50485 1.25195 0.86098 0.80033 0.79193 0.79782 1.20139 1.20622 1.17804 1.46376 1.15503 1.55917 1.17221 1.20889 0.81647 0.78153 0.89854 1.90655 1.51593 1.61142 1.42798 1.21466 0.97042 0.98084 0.95568 0.86360 1.21702 0.94873 1.02105 0.96082 1.22261 0.90461 0.94665 0.93991 1.45655 1.09422 1.32303 1.26585 1.25491 0.99849 0.91890 0.92244 1.70457 1.01138 1.27810 1.26374 1.22058 1.00539 1.00007 0.96680 1.21055 0.85908 1.04572 1.02278 1.20116 0.98507 0.94074 0.94414 0.92560 0.92726 0.94855 0.93429 0.91987 0.92136 0.76119 0.88092 0.91959 0.87206 0.86012 0.74288 0.81052 0.90839 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.53 71.98 0.61 -4.10 16 2 C -0.12 -4.99 5.59 30.59 0.17 -4.82 16 3 C 0.24 10.70 1.89 44.25 0.08 10.78 16 4 H 0.03 1.46 4.73 -2.39 -0.01 1.45 16 5 C -0.53 -27.42 9.05 25.60 0.23 -27.19 16 6 H 0.06 3.13 8.06 -2.91 -0.02 3.10 16 7 C 0.03 1.89 5.47 84.65 0.46 2.35 16 8 N -0.93 -54.76 13.96 21.45 0.30 -54.46 16 9 Si 0.92 43.80 26.99 68.60 1.85 45.65 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.25 -11.69 6.82 99.48 0.68 -11.01 16 13 N -0.70 -24.98 4.93 -446.08 -2.20 -27.18 16 14 C 0.51 16.31 5.74 87.66 0.50 16.81 16 15 O -0.58 -22.49 12.96 -3.05 -0.04 -22.53 16 16 C -0.10 -2.22 2.55 -11.21 -0.03 -2.25 16 17 H 0.12 2.16 8.12 -2.39 -0.02 2.14 16 18 C -0.11 -2.04 4.68 30.86 0.14 -1.89 16 19 C 0.11 1.29 6.99 86.48 0.60 1.90 16 20 N -0.46 -8.40 3.13 -514.85 -1.61 -10.01 16 21 C 0.19 3.52 12.66 180.38 2.28 5.81 16 22 N -0.54 -14.11 11.27 -200.97 -2.26 -16.38 16 23 C -0.05 -1.19 11.84 83.30 0.99 -0.20 16 24 C -0.02 -0.53 6.57 40.73 0.27 -0.26 16 25 C -0.03 -0.74 5.45 30.01 0.16 -0.58 16 26 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.05 1.86 5.63 -2.39 -0.01 1.85 16 28 H 0.03 1.28 7.89 -2.39 -0.02 1.27 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.40 12.71 8.31 -92.71 -0.77 11.94 16 33 H 0.10 1.87 7.78 -2.39 -0.02 1.85 16 34 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.24 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.17 3.99 8.06 -2.91 -0.02 3.96 16 39 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 40 H 0.10 2.17 7.95 -2.39 -0.02 2.15 16 Total: -1.00 -69.82 321.09 2.77 -67.05 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.25 Total: 21.49 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 6.49 Total: -3.64 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -5.78 Total: -108.03 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.04 Total: -22.53 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.85 Total: 45.65 kcal Total: -69.82 2.77 -67.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330875832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.586 kcal (2) G-P(sol) polarization free energy of solvation -69.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds