Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 H 1.09005 * 109.47158 * 55.00467 * 3 2 1 5 5 C 1.50704 * 109.47376 * 174.99580 * 3 2 1 6 6 H 1.08002 * 119.99832 * 119.99642 * 5 3 2 7 7 C 1.37882 * 120.00126 * 300.00612 * 5 3 2 8 8 N 1.31508 * 119.99759 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99863 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46851 * 89.99898 * 9 7 5 11 11 H 1.48501 * 109.46932 * 209.99876 * 9 7 5 12 12 H 1.48500 * 109.47243 * 329.99703 * 9 7 5 13 13 N 1.46495 * 109.47403 * 294.99769 * 3 2 1 14 14 C 1.34775 * 119.99997 * 84.99889 * 13 3 2 15 15 O 1.21282 * 119.99730 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00219 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.52526 * 300.07643 * 16 14 13 18 18 C 1.53119 * 109.49694 * 179.97438 * 16 14 13 19 19 C 1.53283 * 109.70350 * 170.13737 * 18 16 14 20 20 N 1.46476 * 108.69378 * 50.77168 * 19 18 16 21 21 C 1.34406 * 128.44653 * 162.43037 * 20 19 18 22 22 N 1.30780 * 108.55539 * 180.02562 * 21 20 19 23 23 C 1.34426 * 109.31867 * 0.27407 * 22 21 20 24 24 C 1.33859 * 107.80029 * 359.79144 * 23 22 21 25 25 C 1.50711 * 128.68356 * 180.11685 * 24 23 22 26 26 H 1.08995 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47224 * 299.99938 * 1 2 3 28 28 H 1.09000 * 109.46683 * 59.99833 * 1 2 3 29 29 H 1.09001 * 109.47162 * 240.00045 * 2 1 3 30 30 H 1.08999 * 109.47153 * 119.99927 * 2 1 3 31 31 H 0.97006 * 119.99872 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00229 * 264.99668 * 13 3 2 33 33 H 1.09000 * 109.43383 * 50.06619 * 18 16 14 34 34 H 1.08998 * 109.39260 * 290.18384 * 18 16 14 35 35 H 1.08998 * 109.60036 * 291.01231 * 19 18 16 36 36 H 1.09002 * 109.73522 * 170.61326 * 19 18 16 37 37 H 1.08000 * 125.71930 * 0.15716 * 21 20 19 38 38 H 1.08008 * 126.10062 * 179.78171 * 23 22 21 39 39 H 1.09006 * 109.74293 * 44.58290 * 25 24 23 40 40 H 1.08997 * 109.78724 * 283.89025 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8799 1.3813 10 1 6.4427 2.1128 2.0839 11 1 6.4391 -0.3112 2.1547 12 1 6.6132 0.8394 0.0272 13 7 1.6526 2.0975 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3391 2.6327 -0.4341 16 6 0.0365 3.3377 -2.6548 17 1 0.7282 4.1523 -2.8694 18 6 -1.3838 3.8943 -2.5220 19 6 -1.7038 4.7869 -3.7263 20 7 -1.3866 4.0519 -4.9530 21 6 -1.7961 4.3041 -6.2080 22 7 -1.2806 3.4028 -7.0031 23 6 -0.5346 2.5481 -6.2820 24 6 -0.5881 2.9374 -5.0023 25 6 0.0770 2.3173 -3.8005 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0606 2.9503 32 1 2.2721 2.1232 -1.9977 33 1 -1.4595 4.4802 -1.6060 34 1 -2.0941 3.0683 -2.4839 35 1 -1.1027 5.6949 -3.6784 36 1 -2.7620 5.0482 -3.7200 37 1 -2.4410 5.1163 -6.5096 38 1 0.0107 1.6987 -6.6664 39 1 1.1120 2.0715 -4.0383 40 1 -0.4580 1.4139 -3.5078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330875833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = -9.606677 kcal Electronic energy + Delta-G solvation = -21897.079838 eV Core-core repulsion = 18711.337671 eV Total energy + Delta-G solvation = -3185.742167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.24790 -40.88014 -37.57621 -36.62413 -34.47900 -33.92885 -32.62038 -31.40860 -29.40441 -28.42007 -25.71738 -25.03832 -23.74113 -22.40385 -21.77844 -21.02863 -20.04379 -18.86629 -18.06006 -17.47646 -17.17122 -16.68598 -16.31949 -16.00978 -15.13528 -15.02384 -14.89061 -14.75218 -14.61442 -14.50521 -14.02381 -13.73751 -13.44643 -13.19357 -12.91465 -12.89204 -12.77921 -12.68390 -12.17264 -12.11020 -12.06009 -11.95984 -11.56673 -11.03656 -10.97683 -10.59129 -10.44419 -10.40977 -9.60071 -9.27499 -8.15267 -6.32136 1.15251 1.45101 1.46045 1.56008 1.84175 1.92709 2.22461 2.35955 2.61931 3.14524 3.46834 3.60898 3.69366 3.80720 3.97494 4.16292 4.23244 4.31958 4.48630 4.50795 4.56864 4.58606 4.72039 4.77045 4.78248 4.87851 4.98815 5.08827 5.14470 5.28595 5.44607 5.45412 5.58148 5.64828 5.80234 5.81964 5.94344 6.19323 6.36854 6.76658 7.01241 7.14798 7.35311 7.60490 8.89787 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028079 B = 0.004136 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.932393 B = 6768.278803 C = 7095.542463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.261 1.261 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.584 6.584 16 C -0.100 4.100 17 H 0.113 0.887 18 C -0.110 4.110 19 C 0.108 3.892 20 N -0.457 5.457 21 C 0.186 3.814 22 N -0.538 5.538 23 C -0.044 4.044 24 C -0.024 4.024 25 C -0.029 4.029 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.240 0.760 38 H 0.176 0.824 39 H 0.105 0.895 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 8.133 -13.352 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.185 1.185 13 N -0.351 5.351 14 C 0.292 3.708 15 O -0.465 6.465 16 C -0.122 4.122 17 H 0.131 0.869 18 C -0.148 4.148 19 C -0.012 4.012 20 N -0.140 5.140 21 C -0.096 4.096 22 N -0.257 5.257 23 C -0.190 4.190 24 C -0.139 4.139 25 C -0.068 4.068 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.256 0.744 38 H 0.193 0.807 39 H 0.123 0.877 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.491 8.068 -13.231 17.671 hybrid contribution 1.292 -0.250 1.176 1.765 sum -7.198 7.819 -12.056 16.071 Atomic orbital electron populations 1.21669 0.96967 0.99033 1.00301 1.21776 0.93730 0.99249 1.01241 1.18339 0.93459 0.89156 0.81548 0.98336 1.21596 0.91615 1.38762 1.06580 0.91087 1.25727 1.03028 0.94447 0.95136 1.70043 1.36965 1.38441 1.09840 0.85429 0.79501 0.77346 0.78570 1.20506 1.21137 1.18494 1.46272 1.15637 1.55810 1.17423 1.20888 0.81681 0.78500 0.89683 1.90665 1.52375 1.61083 1.42393 1.21387 0.99679 0.99349 0.91765 0.86862 1.21617 0.94619 1.00173 0.98418 1.22231 1.04575 0.94750 0.79691 1.45654 1.36484 1.22504 1.09350 1.25470 1.02995 1.02025 0.79105 1.70467 1.14427 1.06494 1.34293 1.22078 1.04696 1.02458 0.89809 1.21086 1.02143 0.93330 0.97352 1.20109 1.01787 0.96528 0.88336 0.93868 0.95624 0.93487 0.94017 0.91255 0.92682 0.76261 0.88775 0.91732 0.87466 0.85973 0.74445 0.80712 0.87687 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.52 71.98 0.61 -4.69 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.59 16 3 C 0.28 13.64 2.24 44.25 0.10 13.74 16 4 H 0.00 -0.07 7.58 -2.38 -0.02 -0.09 16 5 C -0.55 -28.00 8.73 25.60 0.22 -27.77 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.91 -51.36 11.29 21.45 0.24 -51.12 16 9 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 13 N -0.70 -26.61 4.93 -446.10 -2.20 -28.80 16 14 C 0.51 17.66 5.70 87.66 0.50 18.16 16 15 O -0.58 -25.14 12.96 -3.04 -0.04 -25.18 16 16 C -0.10 -2.37 2.54 -11.34 -0.03 -2.40 16 17 H 0.11 2.33 8.12 -2.39 -0.02 2.31 16 18 C -0.11 -2.25 4.66 30.73 0.14 -2.11 16 19 C 0.11 1.45 7.00 86.48 0.61 2.05 16 20 N -0.46 -8.53 3.13 -514.85 -1.61 -10.14 16 21 C 0.19 3.50 12.66 180.38 2.28 5.78 16 22 N -0.54 -13.75 11.27 -200.97 -2.26 -16.01 16 23 C -0.04 -1.07 11.84 83.30 0.99 -0.09 16 24 C -0.02 -0.54 6.57 40.73 0.27 -0.27 16 25 C -0.03 -0.64 5.45 30.01 0.16 -0.47 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 28 H 0.05 1.92 5.65 -2.39 -0.01 1.91 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 3.74 5.95 -2.39 -0.01 3.73 16 31 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 32 H 0.40 12.88 8.26 -92.71 -0.77 12.11 16 33 H 0.09 2.05 7.77 -2.39 -0.02 2.03 16 34 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.24 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.18 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.10 2.04 7.95 -2.38 -0.02 2.02 16 40 H 0.08 1.87 8.11 -2.39 -0.02 1.85 16 Total: -1.00 -68.79 321.16 2.90 -65.89 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.28 Total: 24.43 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 6.47 Total: -2.33 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -5.83 Total: -106.07 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -68.79 2.90 -65.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330875833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.287 kcal (2) G-P(sol) polarization free energy of solvation -68.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds