Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47520 * 2 1 4 4 H 1.08998 * 109.47469 * 304.90522 * 3 2 1 5 5 C 1.50699 * 109.47413 * 184.89988 * 3 2 1 6 6 H 1.08002 * 120.00422 * 245.45286 * 5 3 2 7 7 C 1.37878 * 119.99577 * 65.45737 * 5 3 2 8 8 N 1.31516 * 120.00139 * 9.46660 * 7 5 3 9 9 Si 1.86802 * 119.99757 * 189.47000 * 7 5 3 10 10 H 1.48504 * 109.47178 * 84.99090 * 9 7 5 11 11 H 1.48500 * 109.47164 * 204.99337 * 9 7 5 12 12 H 1.48503 * 109.47186 * 324.98930 * 9 7 5 13 13 N 1.46506 * 109.47240 * 64.90262 * 3 2 1 14 14 C 1.34774 * 120.00032 * 275.00486 * 13 3 2 15 15 O 1.21288 * 120.00108 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00457 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.52367 * 59.91194 * 16 14 13 18 18 C 1.53114 * 109.50288 * 179.97438 * 16 14 13 19 19 C 1.53277 * 109.70738 * 189.85917 * 18 16 14 20 20 N 1.46475 * 108.69950 * 309.23767 * 19 18 16 21 21 C 1.34397 * 128.44866 * 197.33991 * 20 19 18 22 22 N 1.30785 * 108.55813 * 179.81050 * 21 20 19 23 23 C 1.34435 * 109.31666 * 0.05940 * 22 21 20 24 24 C 1.33858 * 107.79617 * 0.02562 * 23 22 21 25 25 C 1.50708 * 128.67840 * 179.90264 * 24 23 22 26 26 H 1.08993 * 109.47627 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46939 * 300.00162 * 1 2 3 28 28 H 1.09000 * 109.47179 * 59.99413 * 1 2 3 29 29 H 1.09007 * 109.46681 * 239.99994 * 2 1 3 30 30 H 1.09000 * 109.47179 * 120.00587 * 2 1 3 31 31 H 0.97003 * 119.99434 * 179.97438 * 8 7 5 32 32 H 0.96993 * 120.00088 * 94.99689 * 13 3 2 33 33 H 1.08993 * 109.43075 * 309.93950 * 18 16 14 34 34 H 1.09001 * 109.42637 * 69.79299 * 18 16 14 35 35 H 1.08997 * 109.59865 * 68.99899 * 19 18 16 36 36 H 1.08996 * 109.60168 * 189.47594 * 19 18 16 37 37 H 1.08002 * 125.72460 * 359.81810 * 21 20 19 38 38 H 1.08000 * 126.10087 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.74960 * 76.10272 * 25 24 23 40 40 H 1.09004 * 109.78948 * 315.40546 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5421 1.4441 -0.1214 6 1 4.1494 1.8089 0.6939 7 6 4.1411 0.9800 -1.2732 8 7 3.4096 0.7115 -2.3326 9 14 5.9919 0.7326 -1.3290 10 1 6.3289 -0.6069 -0.7836 11 1 6.4618 0.8274 -2.7345 12 1 6.6562 1.7807 -0.5133 13 7 1.6505 2.0981 1.2509 14 6 0.4331 2.6651 1.3638 15 8 -0.3400 2.6329 0.4297 16 6 0.0321 3.3392 2.6505 17 1 0.7235 4.1538 2.8659 18 6 -1.3875 3.8967 2.5148 19 6 -1.7093 4.7899 3.7182 20 7 -1.3949 4.0552 4.9457 21 6 -1.8034 4.3106 6.2004 22 7 -1.2942 3.4061 6.9961 23 6 -0.5475 2.5505 6.2767 24 6 -0.5974 2.9401 4.9970 25 6 0.0695 2.3190 3.7967 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8311 0.3853 -3.1431 32 1 2.2687 2.1242 1.9978 33 1 -1.4609 4.4823 1.5985 34 1 -2.0987 3.0717 2.4751 35 1 -1.1076 5.6975 3.6711 36 1 -2.7679 5.0493 3.7083 37 1 -2.4447 5.1259 6.5011 38 1 -0.0042 1.7005 6.6624 39 1 -0.4667 1.4165 3.5033 40 1 1.1037 2.0713 4.0361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330875835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = 7.459866 kcal Electronic energy + Delta-G solvation = -21886.410751 eV Core-core repulsion = 18701.408644 eV Total energy + Delta-G solvation = -3185.002106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38526 -39.42976 -36.38648 -34.98978 -33.27815 -32.28410 -31.00594 -30.49018 -28.17324 -26.83554 -24.72114 -23.38497 -22.49983 -21.52867 -20.26466 -19.45629 -19.06578 -17.36628 -17.12224 -15.95141 -15.74679 -15.31348 -14.98537 -14.41769 -14.09811 -14.04023 -13.88525 -13.54138 -13.32386 -13.18128 -12.74978 -12.31996 -11.93722 -11.81173 -11.52113 -11.36557 -11.18999 -11.04464 -11.01959 -10.81921 -10.39019 -10.25382 -10.03881 -9.74243 -9.58700 -9.15676 -9.00137 -8.52261 -8.38640 -7.91397 -6.18958 -4.24545 2.00125 2.70067 3.11236 3.22207 3.25969 3.29691 3.30636 3.88423 4.30951 4.37395 4.50589 4.60112 4.70262 4.77585 5.04095 5.08349 5.14484 5.18779 5.33706 5.54082 5.61960 5.68354 5.80148 5.90754 6.07545 6.29360 6.31705 6.33344 6.54002 6.69000 6.93050 7.10794 7.14388 7.26138 7.35335 7.55492 7.66038 7.78713 8.00540 8.02790 8.59999 8.74182 9.05384 9.41641 10.89133 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028130 B = 0.004140 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.145013 B = 6762.292685 C = 7103.763931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.507 3.493 15 O -0.547 6.547 16 C -0.114 4.114 17 H 0.095 0.905 18 C -0.113 4.113 19 C 0.103 3.897 20 N -0.455 5.455 21 C 0.177 3.823 22 N -0.499 5.499 23 C -0.027 4.027 24 C -0.014 4.014 25 C -0.036 4.036 26 H 0.023 0.977 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.388 0.612 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.202 0.798 38 H 0.169 0.831 39 H 0.088 0.912 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 6.220 11.899 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.291 3.709 15 O -0.425 6.425 16 C -0.136 4.136 17 H 0.113 0.887 18 C -0.151 4.151 19 C -0.019 4.019 20 N -0.139 5.139 21 C -0.105 4.105 22 N -0.217 5.217 23 C -0.174 4.174 24 C -0.129 4.129 25 C -0.075 4.075 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.219 0.781 38 H 0.186 0.814 39 H 0.106 0.894 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.767 6.175 11.723 15.888 hybrid contribution 1.423 -0.045 -0.572 1.534 sum -7.344 6.130 11.151 14.692 Atomic orbital electron populations 1.21839 0.98072 0.98180 1.01419 1.21848 0.92917 0.99872 1.01229 1.18803 0.94361 0.88913 0.81267 0.92636 1.21171 0.90573 1.44144 1.01816 0.92102 1.24880 0.98454 0.95094 0.94980 1.69982 1.35775 1.43685 1.02146 0.86543 0.85002 0.78767 0.77281 1.20379 1.21177 1.19913 1.46496 1.14524 1.55632 1.18523 1.20066 0.82899 0.79492 0.88408 1.90681 1.51607 1.59918 1.40341 1.21459 0.98286 0.99177 0.94689 0.88690 1.21665 0.96197 1.00186 0.97026 1.22093 1.02315 0.95375 0.82125 1.45487 1.37096 1.22738 1.08592 1.24737 1.04041 1.02145 0.79539 1.70482 1.13122 1.05115 1.33015 1.21829 1.04249 1.01988 0.89383 1.21137 1.01453 0.92557 0.97759 1.20195 1.01115 0.97322 0.88866 0.95773 0.94077 0.93020 0.90261 0.94648 0.92531 0.77960 0.88292 0.90251 0.89584 0.88835 0.78105 0.81386 0.89414 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.16 0.32 -2.58 16 2 C -0.12 -2.74 5.50 -26.74 -0.15 -2.89 16 3 C 0.27 6.40 2.11 -69.08 -0.15 6.25 16 4 H 0.06 1.57 7.52 -51.93 -0.39 1.18 16 5 C -0.54 -13.73 8.66 -34.44 -0.30 -14.02 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.83 5.16 -17.82 -0.09 1.74 16 8 N -0.88 -24.31 12.16 55.43 0.67 -23.63 16 9 Si 0.90 20.16 29.55 -169.99 -5.02 15.14 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.70 -13.35 4.93 -54.93 -0.27 -13.62 16 14 C 0.51 8.91 5.69 -10.99 -0.06 8.85 16 15 O -0.55 -11.54 12.96 5.55 0.07 -11.47 16 16 C -0.11 -1.45 2.54 -91.46 -0.23 -1.68 16 17 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 18 C -0.11 -1.26 4.66 -26.53 -0.12 -1.38 16 19 C 0.10 0.87 7.00 -3.91 -0.03 0.84 16 20 N -0.46 -4.93 3.13 -114.09 -0.36 -5.28 16 21 C 0.18 1.94 12.66 -90.72 -1.15 0.79 16 22 N -0.50 -6.82 11.27 -14.87 -0.17 -6.99 16 23 C -0.03 -0.35 11.84 -17.95 -0.21 -0.56 16 24 C -0.01 -0.18 6.57 -81.73 -0.54 -0.71 16 25 C -0.04 -0.43 5.45 -27.63 -0.15 -0.58 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 28 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 29 H 0.08 2.03 6.80 -51.92 -0.35 1.67 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.39 6.39 8.25 -40.82 -0.34 6.05 16 33 H 0.10 1.15 7.77 -51.93 -0.40 0.74 16 34 H 0.08 0.98 8.11 -51.93 -0.42 0.55 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 40 H 0.09 0.99 7.95 -51.93 -0.41 0.58 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -31.16 322.52 -9.01 -40.17 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.94 Total: 6.75 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.86 Total: -5.93 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.12 Total: -49.53 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.16 -9.01 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330875835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.632 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds