Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47520 * 2 1 4 4 H 1.08998 * 109.47469 * 304.90522 * 3 2 1 5 5 C 1.50699 * 109.47413 * 184.89988 * 3 2 1 6 6 H 1.08002 * 120.00422 * 245.45286 * 5 3 2 7 7 C 1.37878 * 119.99577 * 65.45737 * 5 3 2 8 8 N 1.31516 * 120.00139 * 9.46660 * 7 5 3 9 9 Si 1.86802 * 119.99757 * 189.47000 * 7 5 3 10 10 H 1.48504 * 109.47178 * 84.99090 * 9 7 5 11 11 H 1.48500 * 109.47164 * 204.99337 * 9 7 5 12 12 H 1.48503 * 109.47186 * 324.98930 * 9 7 5 13 13 N 1.46506 * 109.47240 * 64.90262 * 3 2 1 14 14 C 1.34774 * 120.00032 * 275.00486 * 13 3 2 15 15 O 1.21288 * 120.00108 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00457 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.52367 * 59.91194 * 16 14 13 18 18 C 1.53114 * 109.50288 * 179.97438 * 16 14 13 19 19 C 1.53277 * 109.70738 * 189.85917 * 18 16 14 20 20 N 1.46475 * 108.69950 * 309.23767 * 19 18 16 21 21 C 1.34397 * 128.44866 * 197.33991 * 20 19 18 22 22 N 1.30785 * 108.55813 * 179.81050 * 21 20 19 23 23 C 1.34435 * 109.31666 * 0.05940 * 22 21 20 24 24 C 1.33858 * 107.79617 * 0.02562 * 23 22 21 25 25 C 1.50708 * 128.67840 * 179.90264 * 24 23 22 26 26 H 1.08993 * 109.47627 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46939 * 300.00162 * 1 2 3 28 28 H 1.09000 * 109.47179 * 59.99413 * 1 2 3 29 29 H 1.09007 * 109.46681 * 239.99994 * 2 1 3 30 30 H 1.09000 * 109.47179 * 120.00587 * 2 1 3 31 31 H 0.97003 * 119.99434 * 179.97438 * 8 7 5 32 32 H 0.96993 * 120.00088 * 94.99689 * 13 3 2 33 33 H 1.08993 * 109.43075 * 309.93950 * 18 16 14 34 34 H 1.09001 * 109.42637 * 69.79299 * 18 16 14 35 35 H 1.08997 * 109.59865 * 68.99899 * 19 18 16 36 36 H 1.08996 * 109.60168 * 189.47594 * 19 18 16 37 37 H 1.08002 * 125.72460 * 359.81810 * 21 20 19 38 38 H 1.08000 * 126.10087 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.74960 * 76.10272 * 25 24 23 40 40 H 1.09004 * 109.78948 * 315.40546 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5421 1.4441 -0.1214 6 1 4.1494 1.8089 0.6939 7 6 4.1411 0.9800 -1.2732 8 7 3.4096 0.7115 -2.3326 9 14 5.9919 0.7326 -1.3290 10 1 6.3289 -0.6069 -0.7836 11 1 6.4618 0.8274 -2.7345 12 1 6.6562 1.7807 -0.5133 13 7 1.6505 2.0981 1.2509 14 6 0.4331 2.6651 1.3638 15 8 -0.3400 2.6329 0.4297 16 6 0.0321 3.3392 2.6505 17 1 0.7235 4.1538 2.8659 18 6 -1.3875 3.8967 2.5148 19 6 -1.7093 4.7899 3.7182 20 7 -1.3949 4.0552 4.9457 21 6 -1.8034 4.3106 6.2004 22 7 -1.2942 3.4061 6.9961 23 6 -0.5475 2.5505 6.2767 24 6 -0.5974 2.9401 4.9970 25 6 0.0695 2.3190 3.7967 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8311 0.3853 -3.1431 32 1 2.2687 2.1242 1.9978 33 1 -1.4609 4.4823 1.5985 34 1 -2.0987 3.0717 2.4751 35 1 -1.1076 5.6975 3.6711 36 1 -2.7679 5.0493 3.7083 37 1 -2.4447 5.1259 6.5011 38 1 -0.0042 1.7005 6.6624 39 1 -0.4667 1.4165 3.5033 40 1 1.1037 2.0713 4.0361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330875835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = -11.289585 kcal Electronic energy + Delta-G solvation = -21887.223788 eV Core-core repulsion = 18701.408644 eV Total energy + Delta-G solvation = -3185.815144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.24476 -40.87744 -37.56822 -36.60856 -34.46401 -33.94548 -32.67945 -31.40667 -29.39985 -28.42572 -25.71445 -25.02956 -23.74859 -22.40373 -21.81610 -21.03529 -20.04005 -18.86557 -18.05820 -17.45874 -17.17903 -16.68824 -16.31319 -16.01003 -15.14591 -15.01997 -14.89379 -14.75393 -14.61532 -14.50745 -14.01902 -13.74131 -13.41383 -13.30097 -12.93444 -12.90430 -12.79181 -12.61046 -12.19538 -12.12475 -12.06544 -11.97079 -11.60814 -11.07954 -10.96948 -10.55990 -10.45786 -10.40855 -9.61203 -9.27124 -8.18835 -6.31257 1.15617 1.44929 1.46211 1.54991 1.84518 1.92901 2.22724 2.36227 2.61701 3.13325 3.47031 3.61173 3.69543 3.80966 3.97719 4.16609 4.23474 4.32286 4.47816 4.48927 4.54388 4.57233 4.71311 4.75406 4.77360 4.87869 4.99139 5.07668 5.14704 5.26085 5.42780 5.45089 5.55122 5.63353 5.76756 5.80926 5.93904 6.09394 6.36988 6.78271 7.01409 7.15067 7.35297 7.60772 8.89595 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028130 B = 0.004140 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.145013 B = 6762.292685 C = 7103.763931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.277 3.723 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.963 3.037 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.584 6.584 16 C -0.100 4.100 17 H 0.113 0.887 18 C -0.110 4.110 19 C 0.108 3.892 20 N -0.457 5.457 21 C 0.186 3.814 22 N -0.538 5.538 23 C -0.044 4.044 24 C -0.024 4.024 25 C -0.029 4.029 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.025 0.975 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.239 0.761 38 H 0.176 0.824 39 H 0.078 0.922 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.932 7.265 13.866 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.173 3.827 4 H 0.021 0.979 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.788 3.212 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.351 5.351 14 C 0.292 3.708 15 O -0.465 6.465 16 C -0.122 4.122 17 H 0.131 0.869 18 C -0.149 4.149 19 C -0.012 4.012 20 N -0.140 5.140 21 C -0.096 4.096 22 N -0.257 5.257 23 C -0.190 4.190 24 C -0.139 4.139 25 C -0.067 4.067 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.255 0.745 38 H 0.193 0.807 39 H 0.096 0.904 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.622 7.234 13.726 17.750 hybrid contribution 1.311 -0.328 -1.191 1.801 sum -7.312 6.907 12.535 16.071 Atomic orbital electron populations 1.21678 0.96660 0.99260 1.00515 1.21697 0.94080 0.99101 1.00287 1.18348 0.93536 0.89045 0.81765 0.97864 1.21557 0.91544 1.43577 1.02026 0.91018 1.25727 1.02886 0.94879 0.94666 1.70129 1.37673 1.44853 1.02751 0.85493 0.79619 0.79010 0.77038 1.19696 1.21548 1.18828 1.46260 1.15642 1.55814 1.17404 1.20890 0.81690 0.78499 0.89674 1.90671 1.52508 1.61058 1.42272 1.21387 0.99642 0.99355 0.91803 0.86918 1.21617 0.94658 1.00181 0.98398 1.22229 1.04561 0.94767 0.79685 1.45652 1.36574 1.22447 1.09321 1.25465 1.03064 1.01976 0.79113 1.70473 1.14520 1.06397 1.34299 1.22082 1.04634 1.02480 0.89834 1.21094 1.02098 0.93356 0.97370 1.20114 1.01807 0.96513 0.88300 0.93599 0.93210 0.95608 0.93317 0.93239 0.92708 0.76246 0.88840 0.91686 0.87483 0.85996 0.74475 0.80678 0.90380 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.51 71.98 0.61 -4.65 16 2 C -0.11 -5.25 5.50 30.59 0.17 -5.08 16 3 C 0.28 13.50 2.11 44.24 0.09 13.59 16 4 H 0.00 0.20 7.52 -2.39 -0.02 0.18 16 5 C -0.55 -28.06 8.66 25.60 0.22 -27.84 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.00 5.16 84.65 0.44 1.44 16 8 N -0.92 -52.13 12.16 21.45 0.26 -51.87 16 9 Si 0.96 41.30 29.55 68.60 2.03 43.32 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 N -0.70 -26.45 4.93 -446.10 -2.20 -28.65 16 14 C 0.51 17.62 5.69 87.66 0.50 18.12 16 15 O -0.58 -25.16 12.96 -3.06 -0.04 -25.20 16 16 C -0.10 -2.37 2.54 -11.34 -0.03 -2.40 16 17 H 0.11 2.33 8.12 -2.39 -0.02 2.31 16 18 C -0.11 -2.26 4.66 30.73 0.14 -2.11 16 19 C 0.11 1.45 7.00 86.48 0.61 2.06 16 20 N -0.46 -8.49 3.13 -514.88 -1.61 -10.11 16 21 C 0.19 3.49 12.66 180.38 2.28 5.77 16 22 N -0.54 -13.69 11.27 -200.97 -2.27 -15.95 16 23 C -0.04 -1.06 11.84 83.30 0.99 -0.07 16 24 C -0.02 -0.54 6.57 40.73 0.27 -0.27 16 25 C -0.03 -0.62 5.45 30.01 0.16 -0.46 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 2.00 5.65 -2.39 -0.01 1.98 16 28 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 29 H 0.05 2.56 6.80 -2.38 -0.02 2.55 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.40 12.75 8.25 -92.71 -0.76 11.98 16 33 H 0.09 2.05 7.77 -2.39 -0.02 2.03 16 34 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.08 1.85 8.11 -2.39 -0.02 1.83 16 40 H 0.11 2.01 7.95 -2.39 -0.02 1.99 16 Total: -1.00 -69.47 322.52 2.90 -66.56 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.28 Total: 23.80 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 6.45 Total: -1.91 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -5.81 Total: -106.58 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.04 Total: -25.20 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -69.47 2.90 -66.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330875835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.274 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds