Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47536 * 2 1 4 4 H 1.08995 * 109.46762 * 305.00296 * 3 2 1 5 5 C 1.50698 * 109.47696 * 184.99869 * 3 2 1 6 6 H 1.08001 * 119.99936 * 240.00015 * 5 3 2 7 7 C 1.37878 * 119.99734 * 59.99716 * 5 3 2 8 8 N 1.31513 * 119.99929 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99701 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47135 * 90.00394 * 9 7 5 11 11 H 1.48505 * 109.46885 * 210.00183 * 9 7 5 12 12 H 1.48502 * 109.47145 * 329.99832 * 9 7 5 13 13 N 1.46506 * 109.46710 * 64.99716 * 3 2 1 14 14 C 1.34773 * 119.99968 * 275.00042 * 13 3 2 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 3 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.50571 * 299.63652 * 16 14 13 18 18 C 1.53145 * 109.51140 * 179.49212 * 16 14 13 19 19 C 1.53251 * 109.49991 * 170.59168 * 18 16 14 20 20 N 1.46468 * 108.80018 * 50.36200 * 19 18 16 21 21 C 1.36318 * 127.77790 * 162.85106 * 20 19 18 22 22 C 1.34854 * 106.68813 * 180.11168 * 21 20 19 23 23 N 1.34287 * 108.07394 * 359.97438 * 22 21 20 24 24 C 1.30088 * 109.21401 * 359.96413 * 23 22 21 25 25 C 1.51045 * 127.39482 * 180.09645 * 24 23 22 26 26 H 1.08997 * 109.47201 * 300.00075 * 1 2 3 27 27 H 1.08996 * 109.46860 * 60.00376 * 1 2 3 28 28 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47201 * 239.99924 * 2 1 3 30 30 H 1.08999 * 109.47444 * 120.00081 * 2 1 3 31 31 H 0.97001 * 119.99929 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99507 * 95.00898 * 13 3 2 33 33 H 1.08999 * 109.46568 * 290.59167 * 18 16 14 34 34 H 1.09001 * 109.46815 * 50.57698 * 18 16 14 35 35 H 1.08997 * 109.56998 * 290.57432 * 19 18 16 36 36 H 1.09002 * 109.71113 * 170.23372 * 19 18 16 37 37 H 1.08000 * 126.65446 * 0.10458 * 21 20 19 38 38 H 1.08000 * 125.96338 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.71208 * 44.35715 * 25 24 23 40 40 H 1.09001 * 109.71537 * 283.71758 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8800 -1.3810 10 1 6.5539 -0.3520 -0.7597 11 1 6.3836 0.9214 -2.8164 12 1 6.5576 2.0720 -0.6888 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6644 1.3669 15 8 -0.3375 2.6366 0.4326 16 6 0.0366 3.3386 2.6545 17 1 0.0615 2.6135 3.4679 18 6 -1.3789 3.9068 2.5175 19 6 -1.8743 4.3819 3.8877 20 7 -0.8536 5.2461 4.4849 21 6 -1.0021 6.1225 5.5184 22 6 0.2030 6.6939 5.7178 23 7 1.0626 6.1753 4.8259 24 6 0.4387 5.3071 4.0848 25 6 1.0133 4.4818 2.9578 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 -1.3673 4.7476 1.8240 34 1 -2.0460 3.1326 2.1384 35 1 -2.0464 3.5202 4.5326 36 1 -2.8026 4.9408 3.7694 37 1 -1.9090 6.3209 6.0703 38 1 0.4362 7.4386 6.4644 39 1 1.9780 4.0720 3.2570 40 1 1.1366 5.1046 2.0717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330886599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = 9.736905 kcal Electronic energy + Delta-G solvation = -21841.389588 eV Core-core repulsion = 18656.486221 eV Total energy + Delta-G solvation = -3184.903367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.34933 -39.41947 -36.34566 -34.97680 -33.43460 -32.31294 -30.90749 -29.83674 -28.68487 -26.93232 -24.70604 -23.41725 -22.51234 -21.47069 -20.16598 -19.39126 -19.01957 -17.23847 -17.11504 -15.93732 -15.73300 -15.29906 -15.14884 -14.45238 -14.16147 -13.99386 -13.86489 -13.68045 -13.36991 -12.79733 -12.71975 -12.16981 -11.98919 -11.71933 -11.52633 -11.28028 -11.22813 -11.10755 -10.98368 -10.82696 -10.33560 -10.19996 -9.97598 -9.67426 -9.63373 -9.09236 -9.02620 -8.52069 -8.38336 -7.87881 -6.13943 -4.23345 1.99919 2.70342 3.12088 3.23397 3.25003 3.31829 3.34292 3.87251 4.27071 4.34813 4.42323 4.56014 4.71905 4.91418 5.02641 5.11504 5.17721 5.18078 5.37121 5.54837 5.56769 5.71470 5.78823 5.93241 6.07058 6.26419 6.34426 6.40213 6.60881 6.72173 6.98926 7.10784 7.14843 7.31887 7.39816 7.58955 7.69892 7.87056 8.09341 8.15347 8.61113 8.74923 9.06220 9.44175 10.91343 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024365 B = 0.004426 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.921625 B = 6324.111352 C = 7273.786634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.704 5.704 14 C 0.509 3.491 15 O -0.546 6.546 16 C -0.115 4.115 17 H 0.097 0.903 18 C -0.114 4.114 19 C 0.103 3.897 20 N -0.456 5.456 21 C -0.061 4.061 22 C -0.033 4.033 23 N -0.490 5.490 24 C 0.216 3.784 25 C -0.025 4.025 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.102 0.898 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 6.438 13.146 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.351 5.351 14 C 0.293 3.707 15 O -0.425 6.425 16 C -0.137 4.137 17 H 0.115 0.885 18 C -0.152 4.152 19 C -0.019 4.019 20 N -0.139 5.139 21 C -0.194 4.194 22 C -0.182 4.182 23 N -0.209 5.209 24 C -0.046 4.046 25 C -0.064 4.064 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.221 0.779 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.120 0.880 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.479 6.423 12.135 16.684 hybrid contribution 0.327 -0.201 0.532 0.656 sum -9.152 6.222 12.668 16.821 Atomic orbital electron populations 1.21834 0.98423 0.98026 1.01111 1.21942 0.92549 0.99872 1.02348 1.18806 0.94284 0.89144 0.80944 0.93230 1.21236 0.90685 1.39045 1.06335 0.91999 1.24875 0.98601 0.94770 0.95356 1.69890 1.35144 1.37624 1.09345 0.86467 0.84886 0.78504 0.77387 1.20562 1.21096 1.19770 1.46525 1.14420 1.55546 1.18629 1.19972 0.83012 0.79404 0.88343 1.90680 1.51547 1.60159 1.40065 1.21480 0.95828 0.97758 0.98634 0.88511 1.21696 0.96122 1.02823 0.94538 1.22078 0.90450 0.93875 0.95492 1.45485 1.10328 1.31693 1.26416 1.22535 1.01760 0.98824 0.96260 1.22355 0.89700 1.04235 1.01865 1.70077 1.32612 1.10850 1.07356 1.23274 0.81244 1.00001 1.00103 1.20160 0.98392 0.93963 0.93879 0.94406 0.93143 0.95873 0.88252 0.95028 0.92568 0.77853 0.90019 0.88070 0.89681 0.89001 0.81035 0.81480 0.88001 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.59 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.34 16 4 H 0.05 1.39 7.57 -51.93 -0.39 1.00 16 5 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.27 11.29 55.43 0.63 -23.65 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.70 -13.53 4.92 -54.93 -0.27 -13.80 16 14 C 0.51 9.00 5.70 -10.98 -0.06 8.93 16 15 O -0.55 -11.49 12.99 5.56 0.07 -11.42 16 16 C -0.11 -1.48 2.55 -91.49 -0.23 -1.72 16 17 H 0.10 1.12 8.12 -51.93 -0.42 0.69 16 18 C -0.11 -1.28 4.67 -26.53 -0.12 -1.40 16 19 C 0.10 0.91 6.98 -3.93 -0.03 0.88 16 20 N -0.46 -5.25 3.13 -113.76 -0.36 -5.61 16 21 C -0.06 -0.64 11.64 -16.76 -0.20 -0.83 16 22 C -0.03 -0.41 11.87 -17.68 -0.21 -0.62 16 23 N -0.49 -7.49 11.24 -10.62 -0.12 -7.61 16 24 C 0.22 3.00 7.65 -155.24 -1.19 1.81 16 25 C -0.02 -0.33 5.46 -27.51 -0.15 -0.48 16 26 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 27 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.39 6.56 8.23 -40.82 -0.34 6.22 16 33 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 34 H 0.10 1.14 7.79 -51.93 -0.40 0.74 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.10 1.28 7.92 -51.93 -0.41 0.87 16 40 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -31.12 321.23 -8.69 -39.81 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.90 Total: 7.24 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.57 Total: -5.16 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.12 Total: -50.66 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.12 -8.69 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.548 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds