Wall clock time and date at job start Mon Mar 30 2020 02:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47536 * 2 1 4 4 H 1.08995 * 109.46762 * 305.00296 * 3 2 1 5 5 C 1.50698 * 109.47696 * 184.99869 * 3 2 1 6 6 H 1.08001 * 119.99936 * 240.00015 * 5 3 2 7 7 C 1.37878 * 119.99734 * 59.99716 * 5 3 2 8 8 N 1.31513 * 119.99929 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99701 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47135 * 90.00394 * 9 7 5 11 11 H 1.48505 * 109.46885 * 210.00183 * 9 7 5 12 12 H 1.48502 * 109.47145 * 329.99832 * 9 7 5 13 13 N 1.46506 * 109.46710 * 64.99716 * 3 2 1 14 14 C 1.34773 * 119.99968 * 275.00042 * 13 3 2 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 3 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.50571 * 299.63652 * 16 14 13 18 18 C 1.53145 * 109.51140 * 179.49212 * 16 14 13 19 19 C 1.53251 * 109.49991 * 170.59168 * 18 16 14 20 20 N 1.46468 * 108.80018 * 50.36200 * 19 18 16 21 21 C 1.36318 * 127.77790 * 162.85106 * 20 19 18 22 22 C 1.34854 * 106.68813 * 180.11168 * 21 20 19 23 23 N 1.34287 * 108.07394 * 359.97438 * 22 21 20 24 24 C 1.30088 * 109.21401 * 359.96413 * 23 22 21 25 25 C 1.51045 * 127.39482 * 180.09645 * 24 23 22 26 26 H 1.08997 * 109.47201 * 300.00075 * 1 2 3 27 27 H 1.08996 * 109.46860 * 60.00376 * 1 2 3 28 28 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47201 * 239.99924 * 2 1 3 30 30 H 1.08999 * 109.47444 * 120.00081 * 2 1 3 31 31 H 0.97001 * 119.99929 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99507 * 95.00898 * 13 3 2 33 33 H 1.08999 * 109.46568 * 290.59167 * 18 16 14 34 34 H 1.09001 * 109.46815 * 50.57698 * 18 16 14 35 35 H 1.08997 * 109.56998 * 290.57432 * 19 18 16 36 36 H 1.09002 * 109.71113 * 170.23372 * 19 18 16 37 37 H 1.08000 * 126.65446 * 0.10458 * 21 20 19 38 38 H 1.08000 * 125.96338 * 179.97438 * 22 21 20 39 39 H 1.09002 * 109.71208 * 44.35715 * 25 24 23 40 40 H 1.09001 * 109.71537 * 283.71758 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8800 -1.3810 10 1 6.5539 -0.3520 -0.7597 11 1 6.3836 0.9214 -2.8164 12 1 6.5576 2.0720 -0.6888 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6644 1.3669 15 8 -0.3375 2.6366 0.4326 16 6 0.0366 3.3386 2.6545 17 1 0.0615 2.6135 3.4679 18 6 -1.3789 3.9068 2.5175 19 6 -1.8743 4.3819 3.8877 20 7 -0.8536 5.2461 4.4849 21 6 -1.0021 6.1225 5.5184 22 6 0.2030 6.6939 5.7178 23 7 1.0626 6.1753 4.8259 24 6 0.4387 5.3071 4.0848 25 6 1.0133 4.4818 2.9578 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 -1.3673 4.7476 1.8240 34 1 -2.0460 3.1326 2.1384 35 1 -2.0464 3.5202 4.5326 36 1 -2.8026 4.9408 3.7694 37 1 -1.9090 6.3209 6.0703 38 1 0.4362 7.4386 6.4644 39 1 1.9780 4.0720 3.2570 40 1 1.1366 5.1046 2.0717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330886599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:43 Heat of formation + Delta-G solvation = -9.740321 kcal Electronic energy + Delta-G solvation = -21842.234184 eV Core-core repulsion = 18656.486221 eV Total energy + Delta-G solvation = -3185.747963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.25157 -40.88611 -37.56910 -36.59940 -34.57772 -34.06309 -32.62486 -30.75574 -29.77967 -28.70328 -25.78711 -25.01380 -23.81514 -22.36012 -21.76518 -21.01419 -20.00269 -18.88500 -17.98161 -17.40349 -17.18380 -16.75048 -16.38861 -16.08060 -15.23323 -15.09326 -15.07147 -14.68365 -14.60590 -14.50149 -13.91947 -13.67727 -13.35095 -13.17930 -12.94246 -12.84542 -12.76950 -12.64670 -12.24551 -12.15627 -12.12967 -11.97053 -11.55986 -11.02780 -10.92872 -10.62550 -10.51572 -10.47092 -9.60132 -9.26099 -8.14943 -6.31422 1.13335 1.45009 1.46292 1.56058 1.80926 1.89701 2.18621 2.36059 2.59419 3.14853 3.29507 3.55344 3.62849 3.68666 4.10717 4.16227 4.22248 4.28979 4.51894 4.52552 4.59275 4.60723 4.66023 4.69696 4.79697 4.88859 4.94162 5.09737 5.13210 5.29634 5.39439 5.46627 5.59030 5.64963 5.82591 5.89084 5.94721 6.20033 6.24177 6.77179 7.00303 7.18269 7.35642 7.59071 8.90088 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024365 B = 0.004426 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.921625 B = 6324.111352 C = 7273.786634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.965 3.035 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.704 5.704 14 C 0.508 3.492 15 O -0.580 6.580 16 C -0.097 4.097 17 H 0.121 0.879 18 C -0.111 4.111 19 C 0.107 3.893 20 N -0.455 5.455 21 C -0.040 4.040 22 C -0.063 4.063 23 N -0.529 5.529 24 C 0.192 3.808 25 C -0.019 4.019 26 H 0.048 0.952 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.402 0.598 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.214 0.786 38 H 0.186 0.814 39 H 0.103 0.897 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.603 6.634 15.657 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.352 5.352 14 C 0.294 3.706 15 O -0.461 6.461 16 C -0.119 4.119 17 H 0.139 0.861 18 C -0.149 4.149 19 C -0.014 4.014 20 N -0.138 5.138 21 C -0.174 4.174 22 C -0.210 4.210 23 N -0.249 5.249 24 C -0.071 4.071 25 C -0.058 4.058 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.231 0.769 38 H 0.203 0.797 39 H 0.121 0.879 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.430 6.626 14.679 19.187 hybrid contribution 0.563 -0.202 -0.242 0.645 sum -9.866 6.424 14.437 18.629 Atomic orbital electron populations 1.21671 0.96726 0.99174 1.00419 1.21786 0.93995 0.99112 1.01232 1.18357 0.93438 0.89244 0.81502 0.98201 1.21599 0.91689 1.38728 1.06578 0.91209 1.25701 1.02944 0.94482 0.95102 1.70038 1.36891 1.38463 1.09847 0.85448 0.79621 0.78800 0.77092 1.19737 1.21331 1.19108 1.46298 1.15577 1.55799 1.17505 1.20758 0.81795 0.78386 0.89617 1.90668 1.52402 1.61173 1.41871 1.21373 0.96815 0.97712 0.96031 0.86089 1.21657 0.94895 1.02192 0.96164 1.22252 0.90381 0.94803 0.93917 1.45681 1.09897 1.31814 1.26398 1.23169 1.02461 0.96731 0.95020 1.22832 0.90329 1.05453 1.02395 1.69990 1.34495 1.11835 1.08588 1.23121 0.82487 1.00799 1.00647 1.20019 0.98630 0.93749 0.93430 0.93308 0.95535 0.93694 0.91204 0.94109 0.92673 0.76312 0.91716 0.87891 0.87180 0.86156 0.76929 0.79706 0.87887 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.52 71.98 0.61 -4.61 16 2 C -0.12 -5.82 5.45 30.59 0.17 -5.66 16 3 C 0.28 13.77 2.24 44.24 0.10 13.87 16 4 H 0.00 0.01 7.57 -2.39 -0.02 -0.01 16 5 C -0.55 -28.51 8.73 25.60 0.22 -28.29 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -51.72 11.29 21.45 0.24 -51.47 16 9 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 N -0.70 -27.20 4.92 -446.09 -2.20 -29.40 16 14 C 0.51 17.96 5.70 87.66 0.50 18.46 16 15 O -0.58 -24.92 12.99 -3.04 -0.04 -24.96 16 16 C -0.10 -2.38 2.55 -11.36 -0.03 -2.41 16 17 H 0.12 2.44 8.12 -2.39 -0.02 2.42 16 18 C -0.11 -2.28 4.67 30.73 0.14 -2.14 16 19 C 0.11 1.48 6.98 86.47 0.60 2.08 16 20 N -0.46 -9.08 3.13 -513.84 -1.61 -10.69 16 21 C -0.04 -0.70 11.64 83.22 0.97 0.27 16 22 C -0.06 -1.42 11.87 83.54 0.99 -0.43 16 23 N -0.53 -15.74 11.24 -187.51 -2.11 -17.85 16 24 C 0.19 5.07 7.65 138.23 1.06 6.13 16 25 C -0.02 -0.49 5.46 30.09 0.16 -0.33 16 26 H 0.05 1.94 5.65 -2.39 -0.01 1.92 16 27 H 0.03 1.22 7.85 -2.39 -0.02 1.20 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 3.77 5.95 -2.39 -0.01 3.76 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.40 13.38 8.23 -92.71 -0.76 12.62 16 33 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 34 H 0.10 2.12 7.79 -2.39 -0.02 2.10 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.21 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 39 H 0.10 2.57 7.92 -2.39 -0.02 2.55 16 40 H 0.08 2.27 8.11 -2.39 -0.02 2.25 16 Total: -1.00 -69.94 321.23 2.54 -67.40 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.28 Total: 24.57 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.95 Total: -1.65 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -5.67 Total: -109.41 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.04 Total: -24.96 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -69.94 2.54 -67.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.660 kcal (2) G-P(sol) polarization free energy of solvation -69.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds