Wall clock time and date at job start Mon Mar 30 2020 02:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46865 * 2 1 4 4 H 1.09007 * 109.46748 * 55.00072 * 3 2 1 5 5 C 1.50695 * 109.47252 * 174.99789 * 3 2 1 6 6 H 1.07996 * 119.99887 * 119.99948 * 5 3 2 7 7 C 1.37879 * 120.00401 * 300.00565 * 5 3 2 8 8 N 1.31511 * 120.00253 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99632 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47160 * 90.00174 * 9 7 5 11 11 H 1.48501 * 109.47369 * 209.99948 * 9 7 5 12 12 H 1.48501 * 109.47402 * 329.99877 * 9 7 5 13 13 N 1.46495 * 109.47356 * 295.00612 * 3 2 1 14 14 C 1.34778 * 120.00724 * 84.99936 * 13 3 2 15 15 O 1.21282 * 119.99590 * 359.97438 * 14 13 3 16 16 C 1.50692 * 120.00113 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.51235 * 60.10184 * 16 14 13 18 18 C 1.53153 * 109.54915 * 180.21330 * 16 14 13 19 19 C 1.53259 * 109.50263 * 189.43580 * 18 16 14 20 20 N 1.46471 * 108.80428 * 309.65841 * 19 18 16 21 21 C 1.36318 * 127.77727 * 197.40304 * 20 19 18 22 22 C 1.34860 * 106.68543 * 180.02562 * 21 20 19 23 23 N 1.34291 * 108.07392 * 359.63038 * 22 21 20 24 24 C 1.30095 * 109.21165 * 0.25999 * 23 22 21 25 25 C 1.51037 * 127.38784 * 179.90929 * 24 23 22 26 26 H 1.08999 * 109.47311 * 299.99756 * 1 2 3 27 27 H 1.08995 * 109.47119 * 59.99829 * 1 2 3 28 28 H 1.09001 * 109.46780 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46827 * 240.00827 * 2 1 3 30 30 H 1.08995 * 109.47119 * 120.00171 * 2 1 3 31 31 H 0.97008 * 119.99970 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99350 * 264.99726 * 13 3 2 33 33 H 1.08996 * 109.46659 * 309.45140 * 18 16 14 34 34 H 1.09010 * 109.45977 * 69.43578 * 18 16 14 35 35 H 1.09009 * 109.57582 * 189.86292 * 19 18 16 36 36 H 1.09002 * 109.58427 * 69.45686 * 19 18 16 37 37 H 1.07996 * 126.65242 * 359.66347 * 21 20 19 38 38 H 1.08000 * 125.95891 * 179.86806 * 22 21 20 39 39 H 1.09001 * 109.71591 * 315.72502 * 25 24 23 40 40 H 1.08996 * 109.72083 * 76.33023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8797 1.3358 9 14 3.0964 0.1100 2.5706 10 1 2.8746 -1.3261 2.2644 11 1 3.7941 0.2358 3.8755 12 1 1.7881 0.8092 2.6395 13 7 1.6523 2.0976 -1.2517 14 6 0.4350 2.6645 -1.3668 15 8 -0.3397 2.6319 -0.4343 16 6 0.0366 3.3388 -2.6543 17 1 0.0660 2.6149 -3.4686 18 6 -1.3818 3.9009 -2.5208 19 6 -1.8755 4.3749 -3.8920 20 7 -0.8567 5.2436 -4.4862 21 6 -1.0071 6.1235 -5.5164 22 6 0.1976 6.6960 -5.7157 23 7 1.0567 6.1809 -4.8212 24 6 0.4340 5.3104 -4.0817 25 6 1.0087 4.4878 -2.9528 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 5.8771 0.4812 2.1125 32 1 2.2719 2.1233 -1.9977 33 1 -2.0466 3.1236 -2.1441 34 1 -1.3755 4.7413 -1.8265 35 1 -2.8055 4.9310 -3.7732 36 1 -2.0427 3.5131 -4.5381 37 1 -1.9136 6.3193 -6.0698 38 1 0.4298 7.4416 -6.4617 39 1 1.9765 4.0829 -3.2486 40 1 1.1261 5.1110 -2.0664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330886601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:52 Heat of formation + Delta-G solvation = 18.219485 kcal Electronic energy + Delta-G solvation = -21920.868260 eV Core-core repulsion = 18736.332726 eV Total energy + Delta-G solvation = -3184.535534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.38004 -39.61531 -36.49601 -35.21375 -33.49792 -32.34512 -31.45979 -29.88395 -28.77728 -27.43462 -24.77581 -23.30386 -22.49634 -21.51288 -20.54705 -19.64510 -19.09066 -17.39237 -17.16149 -16.16507 -15.81933 -15.63994 -15.28062 -14.53291 -14.22876 -14.14939 -13.88017 -13.71847 -13.52032 -13.04135 -12.87675 -12.38052 -12.13845 -11.98364 -11.86186 -11.71417 -11.34102 -11.21115 -11.06730 -10.92263 -10.65806 -9.99659 -9.95731 -9.66266 -9.61022 -9.26757 -9.16667 -8.77658 -8.40801 -8.13353 -6.22440 -4.25324 1.97160 2.66716 3.05340 3.11530 3.21400 3.33873 3.37666 3.71875 4.22077 4.29468 4.36451 4.49560 4.62036 4.85892 4.96734 5.05087 5.09863 5.11522 5.34660 5.44690 5.52504 5.63386 5.71894 5.87881 5.91402 5.97158 5.99921 6.12670 6.23080 6.60341 6.64738 6.69917 6.79130 6.89323 7.07913 7.21112 7.25019 7.47798 8.07217 8.10067 8.47835 8.73175 8.85817 9.37878 10.89573 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.004448 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.042628 B = 6293.191020 C = 7002.564617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.696 5.696 14 C 0.511 3.489 15 O -0.547 6.547 16 C -0.114 4.114 17 H 0.099 0.901 18 C -0.114 4.114 19 C 0.103 3.897 20 N -0.457 5.457 21 C -0.060 4.060 22 C -0.033 4.033 23 N -0.489 5.489 24 C 0.216 3.784 25 C -0.026 4.026 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.396 0.604 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.834 5.485 -11.932 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.344 5.344 14 C 0.295 3.705 15 O -0.426 6.426 16 C -0.136 4.136 17 H 0.117 0.883 18 C -0.152 4.152 19 C -0.019 4.019 20 N -0.140 5.140 21 C -0.193 4.193 22 C -0.181 4.181 23 N -0.207 5.207 24 C -0.047 4.047 25 C -0.065 4.065 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.190 0.810 38 H 0.186 0.814 39 H 0.122 0.878 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.502 5.519 -11.008 19.025 hybrid contribution -1.011 -0.661 0.111 1.213 sum -15.513 4.858 -10.897 19.571 Atomic orbital electron populations 1.21873 0.97012 0.99011 1.02152 1.22294 0.94291 1.00014 1.01181 1.19168 0.95720 0.88462 0.82780 0.93257 1.21050 0.88567 1.39896 1.07919 0.90083 1.24832 0.94841 0.95142 0.97646 1.69868 1.08687 1.44368 1.29815 0.86913 0.80946 0.79915 0.80989 1.20281 1.22162 1.18507 1.46197 1.14687 1.55421 1.18066 1.20042 0.82762 0.79182 0.88509 1.90677 1.51510 1.60150 1.40226 1.21466 0.95962 0.97865 0.98283 0.88275 1.21710 0.95955 1.02871 0.94694 1.22070 0.90552 0.93824 0.95425 1.45479 1.10397 1.31516 1.26612 1.22538 1.01765 0.98687 0.96360 1.22369 0.89663 1.04240 1.01802 1.70089 1.32564 1.10826 1.07256 1.23249 0.81314 0.99994 1.00101 1.20172 0.98453 0.93879 0.93974 0.92870 0.93035 0.95000 0.92277 0.92738 0.92262 0.77057 0.88101 0.89968 0.88977 0.89636 0.81018 0.81441 0.87829 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.51 37.16 0.32 -2.40 16 2 C -0.14 -2.96 5.11 -26.73 -0.14 -3.10 16 3 C 0.24 5.47 1.83 -69.09 -0.13 5.34 16 4 H 0.05 1.24 6.63 -51.92 -0.34 0.90 16 5 C -0.54 -14.08 9.31 -34.44 -0.32 -14.40 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 9 Si 0.88 21.35 24.41 -169.99 -4.15 17.20 16 10 H -0.28 -6.47 6.83 56.52 0.39 -6.09 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 13 N -0.70 -12.67 4.93 -54.94 -0.27 -12.94 16 14 C 0.51 8.42 5.70 -10.99 -0.06 8.36 16 15 O -0.55 -10.66 12.97 5.56 0.07 -10.59 16 16 C -0.11 -1.37 2.55 -91.47 -0.23 -1.60 16 17 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 18 C -0.11 -1.19 4.67 -26.52 -0.12 -1.31 16 19 C 0.10 0.85 6.98 -3.92 -0.03 0.82 16 20 N -0.46 -5.06 3.13 -113.75 -0.36 -5.42 16 21 C -0.06 -0.62 11.65 -16.76 -0.20 -0.81 16 22 C -0.03 -0.39 11.87 -17.67 -0.21 -0.60 16 23 N -0.49 -7.38 11.24 -10.62 -0.12 -7.50 16 24 C 0.22 2.92 7.65 -155.24 -1.19 1.73 16 25 C -0.03 -0.33 5.46 -27.49 -0.15 -0.48 16 26 H 0.05 1.07 7.85 -51.93 -0.41 0.67 16 27 H 0.05 0.93 5.64 -51.93 -0.29 0.64 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.24 3.22 -51.93 -0.17 1.07 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.40 6.43 8.25 -40.82 -0.34 6.09 16 33 H 0.10 1.03 7.79 -51.93 -0.40 0.63 16 34 H 0.08 0.95 8.12 -51.92 -0.42 0.53 16 35 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.10 1.28 7.94 -51.93 -0.41 0.86 16 40 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -32.41 314.50 -7.63 -40.05 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.77 Total: 6.14 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -2.55 Total: -6.37 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.03 Total: -51.17 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.15 Total: 17.20 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.41 -7.63 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.265 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds