Wall clock time and date at job start Mon Mar 30 2020 02:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 H 1.09001 * 109.46958 * 55.00487 * 3 2 1 5 5 C 1.50699 * 109.47033 * 174.99975 * 3 2 1 6 6 H 1.08003 * 120.00172 * 119.99838 * 5 3 2 7 7 C 1.37877 * 119.99922 * 300.00292 * 5 3 2 8 8 N 1.31515 * 120.00414 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99831 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46833 * 59.99996 * 9 7 5 11 11 H 1.48502 * 109.47101 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47276 * 300.00301 * 9 7 5 13 13 N 1.46493 * 109.47416 * 295.00417 * 3 2 1 14 14 C 1.34778 * 120.00392 * 84.99977 * 13 3 2 15 15 O 1.21277 * 119.99688 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.68010 * 59.99941 * 16 14 13 18 18 C 1.53399 * 109.67987 * 180.51658 * 16 14 13 19 19 C 1.53112 * 109.44762 * 169.41128 * 18 16 14 20 20 C 1.53357 * 109.53777 * 289.99830 * 19 18 16 21 21 C 1.50863 * 108.41002 * 49.97785 * 20 19 18 22 22 N 1.33577 * 128.03170 * 163.31616 * 21 20 19 23 23 C 1.30752 * 109.14684 * 180.02562 * 22 21 20 24 24 N 1.35305 * 108.76656 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.49344 * 179.97438 * 24 23 22 26 26 C 1.35098 * 124.01279 * 343.29755 * 21 20 19 27 27 H 1.08995 * 109.46853 * 299.99630 * 1 2 3 28 28 H 1.09001 * 109.46942 * 59.99873 * 1 2 3 29 29 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46691 * 240.00266 * 2 1 3 31 31 H 1.08998 * 109.47009 * 120.00654 * 2 1 3 32 32 H 0.96999 * 120.00443 * 179.97438 * 8 7 5 33 33 H 0.97009 * 119.99883 * 265.00037 * 13 3 2 34 34 H 1.08996 * 109.47525 * 289.40925 * 18 16 14 35 35 H 1.09001 * 109.47179 * 49.41925 * 18 16 14 36 36 H 1.08996 * 109.46185 * 50.01944 * 19 18 16 37 37 H 1.09003 * 109.46316 * 169.99172 * 19 18 16 38 38 H 1.08993 * 109.67763 * 169.71240 * 20 19 18 39 39 H 1.09003 * 109.67403 * 290.25403 * 20 19 18 40 40 H 1.08005 * 125.61430 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0051 0.8799 1.3811 10 1 6.5005 2.2798 1.3808 11 1 6.3979 0.2165 2.6503 12 1 6.5968 0.1452 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3392 2.6327 -0.4340 16 6 0.0363 3.3378 -2.6547 17 1 0.0662 2.6159 -3.4709 18 6 -1.3812 3.9089 -2.5216 19 6 -1.6815 4.8121 -3.7210 20 6 -0.8383 6.0894 -3.6249 21 6 0.5967 5.6955 -3.3769 22 7 1.6933 6.4431 -3.5281 23 6 2.7439 5.7328 -3.2100 24 7 2.3377 4.4958 -2.8417 25 1 2.9059 3.7630 -2.5567 26 6 0.9815 4.4738 -2.9472 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0612 2.9499 33 1 2.2720 2.1232 -1.9977 34 1 -2.1012 3.0911 -2.4932 35 1 -1.4541 4.4896 -1.6021 36 1 -1.4377 4.2845 -4.6430 37 1 -2.7394 5.0748 -3.7218 38 1 -0.9097 6.6473 -4.5585 39 1 -1.1976 6.7052 -2.8004 40 1 3.7672 6.0770 -3.2360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330972026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:01 Heat of formation + Delta-G solvation = -0.722776 kcal Electronic energy + Delta-G solvation = -22345.437880 eV Core-core repulsion = 19160.080947 eV Total energy + Delta-G solvation = -3185.356932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.26102 -39.24710 -36.45574 -35.03892 -33.31657 -32.32211 -31.00518 -29.88148 -28.81246 -27.09103 -24.28679 -23.01202 -22.12519 -21.56601 -20.41654 -19.60579 -18.81684 -17.85271 -17.11518 -15.84592 -15.55971 -15.19185 -14.76822 -14.61942 -14.31118 -14.15729 -13.52793 -13.44490 -12.99665 -12.79173 -12.56520 -12.07181 -11.86923 -11.53450 -11.38660 -11.17394 -11.05389 -10.91868 -10.88273 -10.81577 -10.44184 -10.27989 -9.92016 -9.75836 -9.72775 -9.19398 -9.12101 -8.61173 -8.03780 -7.97638 -6.23138 -4.34320 2.09737 3.07977 3.16541 3.19350 3.22776 3.23387 3.37700 3.91581 4.26421 4.51754 4.74480 4.89330 5.04149 5.08561 5.13836 5.27681 5.44190 5.50272 5.58060 5.68139 5.91181 6.01768 6.08267 6.18813 6.30611 6.34250 6.36346 6.44027 6.56605 6.83190 6.93610 7.09017 7.24361 7.30429 7.45800 7.49347 7.57795 7.77467 8.06836 8.15869 8.46998 8.63514 8.94826 9.33448 10.81869 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.005786 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.130700 B = 4837.873589 C = 5986.012492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.506 3.494 15 O -0.534 6.534 16 C -0.034 4.034 17 H 0.102 0.898 18 C -0.094 4.094 19 C -0.117 4.117 20 C -0.033 4.033 21 C 0.008 3.992 22 N -0.489 5.489 23 C 0.180 3.820 24 N -0.553 5.553 25 H 0.422 0.578 26 C -0.015 4.015 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.266 0.734 33 H 0.377 0.623 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 5.594 -11.691 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.361 5.361 14 C 0.290 3.710 15 O -0.411 6.411 16 C -0.056 4.056 17 H 0.120 0.880 18 C -0.132 4.132 19 C -0.155 4.155 20 C -0.071 4.071 21 C -0.123 4.123 22 N -0.209 5.209 23 C -0.103 4.103 24 N -0.156 5.156 25 H 0.262 0.738 26 C -0.132 4.132 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.209 0.791 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.196 6.299 -11.059 13.747 hybrid contribution 1.961 -1.298 0.206 2.361 sum -3.235 5.001 -10.853 12.380 Atomic orbital electron populations 1.21842 0.98277 0.98161 1.01215 1.21938 0.92691 0.99706 1.02319 1.18811 0.94206 0.89258 0.80771 0.93198 1.21112 0.90541 1.39746 1.06390 0.92497 1.24871 0.98626 0.94644 0.95309 1.69871 1.35326 1.37081 1.09263 0.86527 0.84737 0.78338 0.77617 1.20187 1.20995 1.20137 1.46625 1.14527 1.56650 1.18312 1.20236 0.82824 0.79112 0.88852 1.90681 1.51136 1.59297 1.39979 1.20012 0.94568 0.93810 0.97250 0.88029 1.21381 0.92813 0.99688 0.99310 1.21634 0.99678 0.95726 0.98494 1.19935 0.87630 0.97423 1.02110 1.20474 0.95257 0.90221 1.06326 1.69963 0.97485 1.32250 1.21157 1.25001 1.00062 0.81596 1.03636 1.43116 1.07131 1.14622 1.50770 0.73775 1.20549 0.83526 0.98944 1.10197 0.93093 0.94346 0.95738 0.95052 0.88229 0.92351 0.79054 0.90490 0.90243 0.91685 0.90819 0.90661 0.90687 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.52 37.16 0.32 -2.64 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.47 2.24 -69.09 -0.15 6.31 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.45 8.73 -34.44 -0.30 -13.75 16 6 H 0.06 1.32 7.74 -52.48 -0.41 0.92 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.85 11.29 55.43 0.63 -23.22 16 9 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.71 -13.67 4.57 -54.94 -0.25 -13.92 16 14 C 0.51 9.46 5.71 -10.98 -0.06 9.40 16 15 O -0.53 -11.84 12.97 5.56 0.07 -11.77 16 16 C -0.03 -0.49 2.90 -92.74 -0.27 -0.75 16 17 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 18 C -0.09 -1.22 4.67 -26.47 -0.12 -1.35 16 19 C -0.12 -1.22 5.90 -26.49 -0.16 -1.38 16 20 C -0.03 -0.39 6.30 -27.62 -0.17 -0.57 16 21 C 0.01 0.11 6.98 -82.87 -0.58 -0.46 16 22 N -0.49 -7.61 11.25 -10.73 -0.12 -7.73 16 23 C 0.18 2.39 13.05 -89.93 -1.17 1.22 16 24 N -0.55 -7.57 5.89 -10.29 -0.06 -7.63 16 25 H 0.42 5.37 6.82 -40.82 -0.28 5.10 16 26 C -0.01 -0.22 6.32 -81.86 -0.52 -0.73 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 28 H 0.04 0.79 5.65 -51.93 -0.29 0.50 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 32 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.38 6.22 6.59 -40.82 -0.27 5.95 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.20 7.74 -51.93 -0.40 0.79 16 36 H 0.06 0.63 8.11 -51.93 -0.42 0.21 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.21 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -30.50 316.27 -9.12 -39.62 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.70 Total: 11.23 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -3.43 Total: -6.13 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.19 Total: -52.51 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.50 -9.12 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330972026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.893 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds