Wall clock time and date at job start Mon Mar 30 2020 02:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 H 1.09001 * 109.46958 * 55.00487 * 3 2 1 5 5 C 1.50699 * 109.47033 * 174.99975 * 3 2 1 6 6 H 1.08003 * 120.00172 * 119.99838 * 5 3 2 7 7 C 1.37877 * 119.99922 * 300.00292 * 5 3 2 8 8 N 1.31515 * 120.00414 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99831 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46833 * 59.99996 * 9 7 5 11 11 H 1.48502 * 109.47101 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47276 * 300.00301 * 9 7 5 13 13 N 1.46493 * 109.47416 * 295.00417 * 3 2 1 14 14 C 1.34778 * 120.00392 * 84.99977 * 13 3 2 15 15 O 1.21277 * 119.99688 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99886 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.68010 * 59.99941 * 16 14 13 18 18 C 1.53399 * 109.67987 * 180.51658 * 16 14 13 19 19 C 1.53112 * 109.44762 * 169.41128 * 18 16 14 20 20 C 1.53357 * 109.53777 * 289.99830 * 19 18 16 21 21 C 1.50863 * 108.41002 * 49.97785 * 20 19 18 22 22 N 1.33577 * 128.03170 * 163.31616 * 21 20 19 23 23 C 1.30752 * 109.14684 * 180.02562 * 22 21 20 24 24 N 1.35305 * 108.76656 * 359.97438 * 23 22 21 25 25 H 0.97001 * 126.49344 * 179.97438 * 24 23 22 26 26 C 1.35098 * 124.01279 * 343.29755 * 21 20 19 27 27 H 1.08995 * 109.46853 * 299.99630 * 1 2 3 28 28 H 1.09001 * 109.46942 * 59.99873 * 1 2 3 29 29 H 1.09001 * 109.47285 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46691 * 240.00266 * 2 1 3 31 31 H 1.08998 * 109.47009 * 120.00654 * 2 1 3 32 32 H 0.96999 * 120.00443 * 179.97438 * 8 7 5 33 33 H 0.97009 * 119.99883 * 265.00037 * 13 3 2 34 34 H 1.08996 * 109.47525 * 289.40925 * 18 16 14 35 35 H 1.09001 * 109.47179 * 49.41925 * 18 16 14 36 36 H 1.08996 * 109.46185 * 50.01944 * 19 18 16 37 37 H 1.09003 * 109.46316 * 169.99172 * 19 18 16 38 38 H 1.08993 * 109.67763 * 169.71240 * 20 19 18 39 39 H 1.09003 * 109.67403 * 290.25403 * 20 19 18 40 40 H 1.08005 * 125.61430 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0051 0.8799 1.3811 10 1 6.5005 2.2798 1.3808 11 1 6.3979 0.2165 2.6503 12 1 6.5968 0.1452 0.2342 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3392 2.6327 -0.4340 16 6 0.0363 3.3378 -2.6547 17 1 0.0662 2.6159 -3.4709 18 6 -1.3812 3.9089 -2.5216 19 6 -1.6815 4.8121 -3.7210 20 6 -0.8383 6.0894 -3.6249 21 6 0.5967 5.6955 -3.3769 22 7 1.6933 6.4431 -3.5281 23 6 2.7439 5.7328 -3.2100 24 7 2.3377 4.4958 -2.8417 25 1 2.9059 3.7630 -2.5567 26 6 0.9815 4.4738 -2.9472 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0612 2.9499 33 1 2.2720 2.1232 -1.9977 34 1 -2.1012 3.0911 -2.4932 35 1 -1.4541 4.4896 -1.6021 36 1 -1.4377 4.2845 -4.6430 37 1 -2.7394 5.0748 -3.7218 38 1 -0.9097 6.6473 -4.5585 39 1 -1.1976 6.7052 -2.8004 40 1 3.7672 6.0770 -3.2360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330972026.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:01 Heat of formation + Delta-G solvation = -19.303873 kcal Electronic energy + Delta-G solvation = -22346.243617 eV Core-core repulsion = 19160.080947 eV Total energy + Delta-G solvation = -3186.162669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.34419 -40.78207 -37.67409 -36.67355 -34.68427 -33.99180 -32.67515 -31.03729 -29.85564 -28.92870 -25.66073 -24.65912 -23.14931 -22.75993 -21.90117 -21.34628 -19.83851 -19.22423 -18.58427 -17.44443 -17.26083 -16.57821 -16.13143 -16.00428 -15.53145 -15.35367 -14.85342 -14.64013 -14.50513 -14.28327 -13.86622 -13.54638 -13.29769 -13.19700 -13.00407 -12.88409 -12.67527 -12.24839 -12.21681 -12.00086 -11.81336 -11.77756 -11.60622 -11.13391 -11.09445 -10.83521 -10.62486 -10.51991 -9.72303 -9.12314 -8.18897 -6.37078 1.00031 1.43421 1.44225 1.51961 1.72782 2.11843 2.19288 2.31817 2.56588 3.11044 3.54987 3.62920 3.84839 3.91947 4.13558 4.31765 4.38542 4.46406 4.48688 4.55781 4.56090 4.73956 4.74837 5.02339 5.03808 5.05683 5.16906 5.21930 5.24350 5.32512 5.40566 5.47231 5.51967 5.55454 5.75062 5.79321 5.85299 6.13521 6.44197 6.69528 6.85718 7.09141 7.28924 7.47269 8.86007 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.005786 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.130700 B = 4837.873589 C = 5986.012492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.280 3.720 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.263 1.263 13 N -0.706 5.706 14 C 0.502 3.498 15 O -0.573 6.573 16 C -0.021 4.021 17 H 0.129 0.871 18 C -0.093 4.093 19 C -0.105 4.105 20 C -0.035 4.035 21 C -0.004 4.004 22 N -0.521 5.521 23 C 0.186 3.814 24 N -0.555 5.555 25 H 0.425 0.575 26 C -0.035 4.035 27 H 0.024 0.976 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.265 0.735 33 H 0.394 0.606 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 5.898 -13.996 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.356 5.356 14 C 0.289 3.711 15 O -0.452 6.452 16 C -0.043 4.043 17 H 0.147 0.853 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.074 4.074 21 C -0.134 4.134 22 N -0.240 5.240 23 C -0.097 4.097 24 N -0.158 5.158 25 H 0.266 0.734 26 C -0.152 4.152 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.228 0.772 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.553 6.611 -13.409 15.628 hybrid contribution 1.758 -1.335 0.945 2.401 sum -2.795 5.276 -12.464 13.820 Atomic orbital electron populations 1.21687 0.96929 0.99238 1.00312 1.21794 0.93830 0.99122 1.01352 1.18367 0.93722 0.89140 0.81096 0.98594 1.21509 0.91212 1.39230 1.06756 0.90788 1.25740 1.03105 0.94366 0.95060 1.70037 1.37151 1.38143 1.09835 0.85466 0.79289 0.78424 0.77563 1.19671 1.21536 1.18783 1.46351 1.15365 1.56490 1.17346 1.21029 0.81884 0.78254 0.89965 1.90668 1.52187 1.60556 1.41839 1.19993 0.95234 0.94025 0.95088 0.85332 1.21400 0.92109 1.00093 0.99498 1.21591 1.00804 0.94353 0.97525 1.20066 0.86356 0.98350 1.02581 1.20995 0.96385 0.90131 1.05873 1.69996 0.98295 1.33112 1.22617 1.25774 1.01186 0.81043 1.01674 1.43163 1.06910 1.14981 1.50779 0.73422 1.20628 0.84032 0.99135 1.11379 0.95682 0.93494 0.93553 0.93912 0.91090 0.92623 0.77167 0.89788 0.92893 0.90237 0.88372 0.89348 0.91048 0.74105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.52 71.98 0.61 -4.77 16 2 C -0.12 -5.77 5.45 30.60 0.17 -5.60 16 3 C 0.28 13.63 2.24 44.25 0.10 13.73 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 5 C -0.55 -27.30 8.73 25.60 0.22 -27.07 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -50.90 11.29 21.45 0.24 -50.66 16 9 Si 0.97 40.34 29.54 68.60 2.03 42.36 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 N -0.71 -26.85 4.57 -446.12 -2.04 -28.89 16 14 C 0.50 18.70 5.71 87.66 0.50 19.20 16 15 O -0.57 -26.05 12.97 -3.02 -0.04 -26.09 16 16 C -0.02 -0.58 2.90 -12.17 -0.04 -0.61 16 17 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 18 C -0.09 -2.29 4.67 30.77 0.14 -2.15 16 19 C -0.11 -1.90 5.90 30.75 0.18 -1.72 16 20 C -0.04 -0.78 6.30 30.02 0.19 -0.59 16 21 C 0.00 -0.11 6.98 41.62 0.29 0.19 16 22 N -0.52 -15.36 11.25 -187.85 -2.11 -17.48 16 23 C 0.19 4.56 13.05 180.11 2.35 6.91 16 24 N -0.55 -14.24 5.89 -186.45 -1.10 -15.34 16 25 H 0.43 10.08 6.82 -92.71 -0.63 9.45 16 26 C -0.03 -0.97 6.32 41.17 0.26 -0.71 16 27 H 0.02 1.17 7.85 -2.39 -0.02 1.16 16 28 H 0.05 1.92 5.65 -2.39 -0.01 1.91 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 32 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.39 12.43 6.59 -92.70 -0.61 11.82 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.59 7.74 -2.39 -0.02 1.57 16 36 H 0.08 1.25 8.11 -2.39 -0.02 1.23 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.24 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -67.67 316.27 2.23 -65.44 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.18 Total: 32.48 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 5.43 Total: -1.83 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -5.01 Total: -112.37 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.04 Total: -26.09 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Total: -67.67 2.23 -65.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330972026.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.133 kcal (2) G-P(sol) polarization free energy of solvation -67.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds