Wall clock time and date at job start Mon Mar 30 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 H 1.09000 * 109.47764 * 55.00086 * 3 2 1 5 5 C 1.50706 * 109.47110 * 174.99932 * 3 2 1 6 6 H 1.07997 * 119.99968 * 119.99857 * 5 3 2 7 7 C 1.37879 * 119.99673 * 299.99906 * 5 3 2 8 8 N 1.31513 * 119.99813 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 120.00245 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47259 * 90.00290 * 9 7 5 11 11 H 1.48504 * 109.47475 * 210.00229 * 9 7 5 12 12 H 1.48500 * 109.47098 * 330.00255 * 9 7 5 13 13 N 1.46501 * 109.47160 * 294.99339 * 3 2 1 14 14 C 1.34783 * 119.99719 * 85.00287 * 13 3 2 15 15 O 1.21277 * 119.99571 * 0.02562 * 14 13 3 16 16 C 1.50692 * 119.99848 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.71568 * 299.46433 * 16 14 13 18 18 C 1.53406 * 109.68096 * 178.92761 * 16 14 13 19 19 C 1.53106 * 109.44956 * 190.64099 * 18 16 14 20 20 C 1.53358 * 109.53394 * 70.00686 * 19 18 16 21 21 C 1.50861 * 108.41387 * 310.02897 * 20 19 18 22 22 N 1.33581 * 128.02982 * 196.77125 * 21 20 19 23 23 C 1.30751 * 109.14373 * 179.83762 * 22 21 20 24 24 N 1.35310 * 108.77002 * 0.02562 * 23 22 21 25 25 H 0.97001 * 126.49548 * 180.02562 * 24 23 22 26 26 C 1.35021 * 123.99091 * 16.64695 * 21 20 19 27 27 H 1.09005 * 109.47447 * 300.00248 * 1 2 3 28 28 H 1.08999 * 109.47226 * 60.00151 * 1 2 3 29 29 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47598 * 239.99861 * 2 1 3 31 31 H 1.09002 * 109.47150 * 119.99321 * 2 1 3 32 32 H 0.97006 * 119.99924 * 179.97438 * 8 7 5 33 33 H 0.96995 * 120.00188 * 265.00195 * 13 3 2 34 34 H 1.08998 * 109.47288 * 310.62936 * 18 16 14 35 35 H 1.08996 * 109.47384 * 70.64065 * 18 16 14 36 36 H 1.08998 * 109.45938 * 309.99123 * 19 18 16 37 37 H 1.08994 * 109.46554 * 190.02746 * 19 18 16 38 38 H 1.09005 * 109.67225 * 190.29695 * 20 19 18 39 39 H 1.08999 * 109.70108 * 69.78366 * 20 19 18 40 40 H 1.08009 * 125.61341 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4538 0.8805 1.3364 9 14 3.0962 0.1102 2.5708 10 1 2.8744 -1.3260 2.2647 11 1 3.7940 0.2361 3.8756 12 1 1.7880 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3671 15 8 -0.3392 2.6326 -0.4343 16 6 0.0368 3.3385 -2.6546 17 1 0.7202 4.1610 -2.8657 18 6 -1.3956 3.8747 -2.5354 19 6 -1.8905 4.3180 -3.9147 20 6 -2.1093 3.0860 -4.8013 21 6 -0.8717 2.2257 -4.7356 22 7 -0.5066 1.2445 -5.5652 23 6 0.6347 0.7473 -5.1652 24 7 1.0319 1.4085 -4.0535 25 1 1.8425 1.2479 -3.5454 26 6 0.0785 2.3417 -3.7834 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 5.8769 0.4827 2.1134 33 1 2.2720 2.1231 -1.9978 34 1 -2.0466 3.0896 -2.1508 35 1 -1.4097 4.7250 -1.8536 36 1 -1.1475 4.9693 -4.3750 37 1 -2.8304 4.8592 -3.8068 38 1 -2.2834 3.4006 -5.8304 39 1 -2.9686 2.5211 -4.4400 40 1 1.1718 -0.0585 -5.6435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330972028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:05 Heat of formation + Delta-G solvation = 8.018191 kcal Electronic energy + Delta-G solvation = -22543.089445 eV Core-core repulsion = 19358.111549 eV Total energy + Delta-G solvation = -3184.977896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35468 -39.45565 -36.60671 -35.28199 -33.41024 -32.37623 -31.54282 -30.00344 -28.90434 -27.59534 -24.36300 -22.77183 -22.20625 -21.78135 -20.69392 -19.94022 -18.89394 -18.01440 -17.20637 -16.12648 -15.84135 -15.45226 -14.84960 -14.71184 -14.31273 -14.22947 -13.69613 -13.50078 -13.41344 -12.95667 -12.62988 -12.34199 -12.09021 -11.97957 -11.77908 -11.31997 -11.08847 -11.01774 -10.95147 -10.88276 -10.71551 -10.07635 -10.02546 -9.83517 -9.64221 -9.35775 -9.24792 -8.86873 -8.25234 -8.11468 -6.31974 -4.35767 2.00770 2.94221 3.11343 3.15238 3.23066 3.28294 3.32499 3.75731 4.21873 4.43858 4.64889 4.81144 4.94032 5.01756 5.04474 5.19675 5.37438 5.41185 5.48346 5.60844 5.85002 5.85327 5.91971 5.93934 6.01734 6.07546 6.11294 6.25714 6.35770 6.53520 6.59070 6.71687 6.75556 6.84853 7.08792 7.15813 7.37146 7.37940 7.97887 8.07895 8.34088 8.62237 8.74321 9.28298 10.79787 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.005474 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.542185 B = 5113.504443 C = 5447.444119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.540 4.540 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.705 5.705 14 C 0.508 3.492 15 O -0.535 6.535 16 C -0.033 4.033 17 H 0.106 0.894 18 C -0.094 4.094 19 C -0.118 4.118 20 C -0.033 4.033 21 C 0.010 3.990 22 N -0.489 5.489 23 C 0.182 3.818 24 N -0.555 5.555 25 H 0.421 0.579 26 C -0.016 4.016 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.268 0.732 33 H 0.384 0.616 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 3.460 -10.990 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.139 3.861 4 H 0.069 0.931 5 C -0.578 4.578 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.220 1.220 12 H -0.185 1.185 13 N -0.354 5.354 14 C 0.293 3.707 15 O -0.412 6.412 16 C -0.056 4.056 17 H 0.124 0.876 18 C -0.132 4.132 19 C -0.156 4.156 20 C -0.072 4.072 21 C -0.120 4.120 22 N -0.208 5.208 23 C -0.101 4.101 24 N -0.159 5.159 25 H 0.261 0.739 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.217 0.783 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -11.234 3.109 -10.887 15.950 hybrid contribution 1.123 -0.568 1.297 1.807 sum -10.112 2.541 -9.590 14.166 Atomic orbital electron populations 1.21874 0.96837 0.99150 1.02277 1.22280 0.94414 0.99860 1.01046 1.19191 0.95726 0.88477 0.82706 0.93083 1.21010 0.88462 1.40223 1.08061 0.90302 1.24824 0.94867 0.95017 0.97638 1.69861 1.08699 1.44175 1.29840 0.86904 0.80958 0.79941 0.80958 1.20220 1.22034 1.18455 1.46297 1.14755 1.56516 1.17816 1.20307 0.82456 0.79096 0.88891 1.90678 1.51190 1.59033 1.40319 1.19996 1.00735 0.95454 0.89368 0.87630 1.21388 0.92925 1.01827 0.97056 1.21635 1.01697 0.97141 0.95095 1.19944 0.93000 0.93808 1.00407 1.20458 0.98151 0.99067 0.94324 1.69981 1.11520 1.10852 1.28412 1.25024 0.95067 1.01125 0.88908 1.43148 1.20549 1.27997 1.24190 0.73855 1.20531 0.93501 0.97979 1.01348 0.92763 0.93010 0.94946 0.92625 0.92616 0.92160 0.78276 0.90300 0.90373 0.91574 0.90754 0.90586 0.90690 0.77509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.55 16 2 C -0.14 -2.93 5.11 -26.73 -0.14 -3.07 16 3 C 0.24 5.44 1.83 -69.08 -0.13 5.31 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 5 C -0.54 -13.87 9.31 -34.44 -0.32 -14.19 16 6 H 0.08 2.12 7.98 -52.49 -0.42 1.70 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.54 13.96 55.43 0.77 -24.77 16 9 Si 0.88 21.17 24.41 -169.99 -4.15 17.02 16 10 H -0.28 -6.43 6.83 56.52 0.39 -6.04 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 13 N -0.70 -12.87 4.57 -54.93 -0.25 -13.12 16 14 C 0.51 8.91 5.71 -10.99 -0.06 8.84 16 15 O -0.53 -11.03 12.98 5.56 0.07 -10.96 16 16 C -0.03 -0.45 2.90 -92.74 -0.27 -0.71 16 17 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 18 C -0.09 -1.14 4.67 -26.47 -0.12 -1.26 16 19 C -0.12 -1.14 5.90 -26.49 -0.16 -1.30 16 20 C -0.03 -0.37 6.30 -27.62 -0.17 -0.55 16 21 C 0.01 0.15 6.98 -82.90 -0.58 -0.43 16 22 N -0.49 -7.13 11.25 -10.74 -0.12 -7.25 16 23 C 0.18 2.22 13.05 -89.92 -1.17 1.05 16 24 N -0.56 -6.97 5.89 -10.28 -0.06 -7.03 16 25 H 0.42 4.88 6.78 -40.82 -0.28 4.60 16 26 C -0.02 -0.22 6.32 -81.86 -0.52 -0.74 16 27 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 28 H 0.05 1.02 5.65 -51.93 -0.29 0.73 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.26 3.22 -51.93 -0.17 1.10 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.38 6.12 6.52 -40.82 -0.27 5.85 16 34 H 0.08 1.09 7.75 -51.93 -0.40 0.69 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.61 8.11 -51.93 -0.42 0.18 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.21 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -31.57 309.41 -8.06 -39.62 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.56 Total: 9.32 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.42 Total: -7.51 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.34 Total: -52.16 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.15 Total: 17.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.57 -8.06 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330972028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.641 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds