Wall clock time and date at job start Mon Mar 30 2020 02:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 H 1.09000 * 109.47764 * 55.00086 * 3 2 1 5 5 C 1.50706 * 109.47110 * 174.99932 * 3 2 1 6 6 H 1.07997 * 119.99968 * 119.99857 * 5 3 2 7 7 C 1.37879 * 119.99673 * 299.99906 * 5 3 2 8 8 N 1.31513 * 119.99813 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 120.00245 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47259 * 90.00290 * 9 7 5 11 11 H 1.48504 * 109.47475 * 210.00229 * 9 7 5 12 12 H 1.48500 * 109.47098 * 330.00255 * 9 7 5 13 13 N 1.46501 * 109.47160 * 294.99339 * 3 2 1 14 14 C 1.34783 * 119.99719 * 85.00287 * 13 3 2 15 15 O 1.21277 * 119.99571 * 0.02562 * 14 13 3 16 16 C 1.50692 * 119.99848 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.71568 * 299.46433 * 16 14 13 18 18 C 1.53406 * 109.68096 * 178.92761 * 16 14 13 19 19 C 1.53106 * 109.44956 * 190.64099 * 18 16 14 20 20 C 1.53358 * 109.53394 * 70.00686 * 19 18 16 21 21 C 1.50861 * 108.41387 * 310.02897 * 20 19 18 22 22 N 1.33581 * 128.02982 * 196.77125 * 21 20 19 23 23 C 1.30751 * 109.14373 * 179.83762 * 22 21 20 24 24 N 1.35310 * 108.77002 * 0.02562 * 23 22 21 25 25 H 0.97001 * 126.49548 * 180.02562 * 24 23 22 26 26 C 1.35021 * 123.99091 * 16.64695 * 21 20 19 27 27 H 1.09005 * 109.47447 * 300.00248 * 1 2 3 28 28 H 1.08999 * 109.47226 * 60.00151 * 1 2 3 29 29 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47598 * 239.99861 * 2 1 3 31 31 H 1.09002 * 109.47150 * 119.99321 * 2 1 3 32 32 H 0.97006 * 119.99924 * 179.97438 * 8 7 5 33 33 H 0.96995 * 120.00188 * 265.00195 * 13 3 2 34 34 H 1.08998 * 109.47288 * 310.62936 * 18 16 14 35 35 H 1.08996 * 109.47384 * 70.64065 * 18 16 14 36 36 H 1.08998 * 109.45938 * 309.99123 * 19 18 16 37 37 H 1.08994 * 109.46554 * 190.02746 * 19 18 16 38 38 H 1.09005 * 109.67225 * 190.29695 * 20 19 18 39 39 H 1.08999 * 109.70108 * 69.78366 * 20 19 18 40 40 H 1.08009 * 125.61341 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4538 0.8805 1.3364 9 14 3.0962 0.1102 2.5708 10 1 2.8744 -1.3260 2.2647 11 1 3.7940 0.2361 3.8756 12 1 1.7880 0.8095 2.6395 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3671 15 8 -0.3392 2.6326 -0.4343 16 6 0.0368 3.3385 -2.6546 17 1 0.7202 4.1610 -2.8657 18 6 -1.3956 3.8747 -2.5354 19 6 -1.8905 4.3180 -3.9147 20 6 -2.1093 3.0860 -4.8013 21 6 -0.8717 2.2257 -4.7356 22 7 -0.5066 1.2445 -5.5652 23 6 0.6347 0.7473 -5.1652 24 7 1.0319 1.4085 -4.0535 25 1 1.8425 1.2479 -3.5454 26 6 0.0785 2.3417 -3.7834 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 5.8769 0.4827 2.1134 33 1 2.2720 2.1231 -1.9978 34 1 -2.0466 3.0896 -2.1508 35 1 -1.4097 4.7250 -1.8536 36 1 -1.1475 4.9693 -4.3750 37 1 -2.8304 4.8592 -3.8068 38 1 -2.2834 3.4006 -5.8304 39 1 -2.9686 2.5211 -4.4400 40 1 1.1718 -0.0585 -5.6435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330972028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:04 Heat of formation + Delta-G solvation = -12.620238 kcal Electronic energy + Delta-G solvation = -22543.984394 eV Core-core repulsion = 19358.111549 eV Total energy + Delta-G solvation = -3185.872845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.35555 -40.89967 -37.80015 -36.77274 -34.70309 -34.18307 -33.04687 -31.05876 -29.88273 -29.38854 -25.57151 -24.49246 -23.15213 -22.95727 -22.03491 -21.52047 -19.83989 -19.42244 -18.60851 -17.69173 -17.55479 -16.72786 -16.09696 -16.00899 -15.60359 -15.31053 -15.16592 -14.77556 -14.66545 -14.39319 -13.98255 -13.84242 -13.59861 -13.46168 -13.01463 -12.92556 -12.82678 -12.49824 -12.10822 -11.91209 -11.80949 -11.78629 -11.48237 -11.29819 -11.13580 -10.89933 -10.82973 -10.60656 -9.88581 -9.13030 -8.42019 -6.47826 0.99839 1.23562 1.32895 1.41316 1.64655 2.11953 2.15367 2.22055 2.38590 2.94227 3.54443 3.58989 3.81989 3.88207 4.11956 4.15499 4.24095 4.32000 4.37190 4.39299 4.49124 4.56357 4.74100 4.77970 4.92727 5.03370 5.04071 5.05179 5.14386 5.17278 5.21791 5.32229 5.33474 5.43273 5.47619 5.56713 5.79143 6.07458 6.43510 6.53493 6.73249 7.09754 7.14735 7.33382 8.72721 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.005474 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.542185 B = 5113.504443 C = 5447.444119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 C 0.251 3.749 4 H 0.024 0.976 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.932 3.068 10 H -0.261 1.261 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.702 5.702 14 C 0.507 3.493 15 O -0.566 6.566 16 C -0.022 4.022 17 H 0.126 0.874 18 C -0.092 4.092 19 C -0.106 4.106 20 C -0.035 4.035 21 C 0.000 4.000 22 N -0.520 5.520 23 C 0.189 3.811 24 N -0.556 5.556 25 H 0.424 0.576 26 C -0.034 4.034 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.270 0.730 33 H 0.396 0.604 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 3.376 -12.153 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.174 4.174 3 C 0.146 3.854 4 H 0.042 0.958 5 C -0.571 4.571 6 H 0.077 0.923 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.760 3.240 10 H -0.187 1.187 11 H -0.222 1.222 12 H -0.186 1.186 13 N -0.352 5.352 14 C 0.294 3.706 15 O -0.446 6.446 16 C -0.045 4.045 17 H 0.143 0.857 18 C -0.130 4.130 19 C -0.144 4.144 20 C -0.074 4.074 21 C -0.131 4.131 22 N -0.240 5.240 23 C -0.094 4.094 24 N -0.160 5.160 25 H 0.265 0.735 26 C -0.151 4.151 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.472 3.035 -12.077 17.624 hybrid contribution 1.524 -0.522 1.583 2.258 sum -10.948 2.513 -10.494 15.372 Atomic orbital electron populations 1.21743 0.95519 1.00326 1.01413 1.22196 0.95473 0.98612 1.01086 1.18799 0.93351 0.89475 0.83785 0.95837 1.21240 0.90113 1.38679 1.07085 0.92270 1.25481 0.95608 0.95824 0.99691 1.69962 1.10183 1.45942 1.30812 0.86099 0.79364 0.79913 0.78615 1.18735 1.22160 1.18603 1.46108 1.15628 1.56604 1.16857 1.20998 0.81446 0.78230 0.89921 1.90664 1.51949 1.60062 1.41887 1.19984 1.02035 0.95585 0.86861 0.85682 1.21403 0.91581 1.01273 0.98769 1.21592 1.03085 0.96703 0.93037 1.20062 0.91930 0.94003 1.01364 1.20945 0.98832 0.99115 0.94165 1.70014 1.12797 1.11774 1.29382 1.25774 0.94486 1.00924 0.88234 1.43189 1.20513 1.27895 1.24372 0.73495 1.20556 0.94151 0.98756 1.01607 0.94315 0.93172 0.92677 0.91312 0.93757 0.92051 0.76861 0.92295 0.89892 0.90553 0.88385 0.89552 0.90770 0.74135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 8.51 71.98 0.61 -4.45 16 2 C -0.14 -5.58 5.11 30.59 0.16 -5.42 16 3 C 0.25 11.16 1.83 44.25 0.08 11.24 16 4 H 0.02 1.20 6.63 -2.39 -0.02 1.18 16 5 C -0.53 -27.53 9.31 25.60 0.24 -27.29 16 6 H 0.06 3.23 7.98 -2.91 -0.02 3.20 16 7 C 0.03 1.87 5.45 84.66 0.46 2.33 16 8 N -0.93 -54.05 13.96 21.45 0.30 -53.75 16 9 Si 0.93 43.59 24.41 68.60 1.67 45.26 16 10 H -0.26 -11.56 6.83 99.48 0.68 -10.88 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.26 -12.18 6.53 99.48 0.65 -11.53 16 13 N -0.70 -25.13 4.57 -446.09 -2.04 -27.17 16 14 C 0.51 17.35 5.71 87.65 0.50 17.85 16 15 O -0.57 -23.17 12.98 -3.02 -0.04 -23.21 16 16 C -0.02 -0.57 2.90 -12.17 -0.04 -0.60 16 17 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 18 C -0.09 -2.08 4.67 30.77 0.14 -1.94 16 19 C -0.11 -1.78 5.90 30.75 0.18 -1.60 16 20 C -0.04 -0.72 6.30 30.02 0.19 -0.53 16 21 C 0.00 -0.01 6.98 41.60 0.29 0.28 16 22 N -0.52 -14.23 11.25 -187.89 -2.11 -16.34 16 23 C 0.19 4.20 13.05 180.10 2.35 6.55 16 24 N -0.56 -12.93 5.89 -186.45 -1.10 -14.02 16 25 H 0.42 9.12 6.78 -92.71 -0.63 8.49 16 26 C -0.03 -0.87 6.32 41.14 0.26 -0.61 16 27 H 0.04 1.58 7.85 -2.38 -0.02 1.56 16 28 H 0.05 1.91 5.65 -2.39 -0.01 1.90 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.04 1.94 3.22 -2.39 -0.01 1.93 16 32 H 0.27 14.82 8.31 -92.70 -0.77 14.04 16 33 H 0.40 12.27 6.52 -92.71 -0.60 11.67 16 34 H 0.06 1.58 7.75 -2.39 -0.02 1.56 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.24 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -67.70 309.41 1.87 -65.83 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.24 Total: 27.59 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.43 Total: -4.20 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.95 Total: -111.28 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.04 Total: -23.21 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.67 Total: 45.26 kcal Total: -67.70 1.87 -65.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330972028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.212 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds