Wall clock time and date at job start Mon Mar 30 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47346 * 180.02562 * 17 16 14 19 19 C 1.38618 * 120.44758 * 124.99780 * 18 17 16 20 20 C 1.38572 * 118.39886 * 180.02562 * 19 18 17 21 21 N 1.32347 * 119.10538 * 0.02562 * 20 19 18 22 22 C 1.31783 * 120.82164 * 359.97438 * 21 20 19 23 23 C 1.50695 * 119.12478 * 180.02562 * 22 21 20 24 24 N 1.31812 * 121.75047 * 359.72339 * 22 21 20 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 32 32 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 33 33 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 34 34 H 1.09000 * 109.47444 * 300.00712 * 17 16 14 35 35 H 1.09000 * 109.46920 * 60.00019 * 17 16 14 36 36 H 1.08003 * 120.80276 * 0.03124 * 19 18 17 37 37 H 1.08001 * 120.44856 * 179.97438 * 20 19 18 38 38 H 1.09009 * 109.46597 * 90.00448 * 23 22 21 39 39 H 1.08999 * 109.47442 * 209.99817 * 23 22 21 40 40 H 1.08997 * 109.47555 * 330.00710 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 6 -1.3828 3.8936 2.5214 18 6 -1.7815 4.5675 3.8091 19 6 -2.2147 5.8842 3.8080 20 6 -2.5703 6.4621 5.0162 21 7 -2.4846 5.7427 6.1238 22 6 -2.0682 4.4929 6.0867 23 6 -1.9859 3.7088 7.3709 24 7 -1.7273 3.9087 4.9553 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 0.0673 2.6131 3.4684 33 1 0.7277 4.1530 2.8678 34 1 -1.4143 4.6181 1.7076 35 1 -2.0739 3.0781 2.3085 36 1 -2.2738 6.4463 2.8876 37 1 -2.9120 7.4859 5.0537 38 1 -2.9342 3.2010 7.5479 39 1 -1.1873 2.9708 7.2955 40 1 -1.7771 4.3871 8.1981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346723939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:27 Heat of formation + Delta-G solvation = -11.134107 kcal Electronic energy + Delta-G solvation = -20927.174280 eV Core-core repulsion = 17741.365879 eV Total energy + Delta-G solvation = -3185.808402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24357 -39.04606 -35.51228 -34.72932 -33.57129 -32.38646 -31.60506 -30.61837 -28.70974 -27.18074 -25.56767 -23.41543 -22.87550 -21.81451 -20.07900 -19.27315 -17.76702 -17.15078 -16.41738 -15.63193 -15.50804 -15.29475 -15.21677 -15.04565 -14.26067 -13.79867 -13.31424 -13.27316 -12.97079 -12.72993 -12.65531 -12.45954 -11.99481 -11.84344 -11.51607 -11.25027 -11.14505 -10.97811 -10.94243 -10.82332 -10.58383 -10.30326 -10.15644 -9.61454 -9.55931 -9.36086 -9.03508 -8.93547 -8.49454 -7.79515 -6.12271 -4.21497 0.73447 0.90721 3.23243 3.31266 3.33782 3.44523 3.54169 3.72974 3.89586 4.06754 4.32425 4.51684 4.81770 4.89470 5.13395 5.17612 5.19217 5.24574 5.28502 5.32819 5.50304 5.69240 5.76229 5.84530 6.05684 6.11814 6.29205 6.41180 6.47922 6.68147 6.87976 7.06275 7.21256 7.38850 7.48394 7.63233 7.74824 7.91503 7.95624 8.19456 8.69817 8.78789 9.16646 9.46236 10.93036 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.003276 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.860582 B = 8543.748864 C = 8734.072623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.552 6.552 16 C -0.133 4.133 17 C -0.055 4.055 18 C 0.189 3.811 19 C -0.233 4.233 20 C 0.150 3.850 21 N -0.530 5.530 22 C 0.317 3.683 23 C -0.085 4.085 24 N -0.515 5.515 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.039 0.961 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 8.585 14.460 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.286 3.714 15 O -0.432 6.432 16 C -0.174 4.174 17 C -0.093 4.093 18 C 0.043 3.957 19 C -0.255 4.255 20 C -0.015 4.015 21 N -0.245 5.245 22 C 0.050 3.950 23 C -0.143 4.143 24 N -0.231 5.231 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.886 7.932 14.431 19.207 hybrid contribution 1.243 0.551 -0.604 1.488 sum -8.642 8.483 13.827 18.380 Atomic orbital electron populations 1.21836 0.98342 0.97994 1.01229 1.21930 0.92635 0.99850 1.02224 1.18777 0.94134 0.89197 0.81125 0.93345 1.21287 0.90820 1.38857 1.06232 0.92084 1.24891 0.98575 0.94838 0.95421 1.69906 1.35002 1.37721 1.09328 0.86413 0.84943 0.77773 0.78087 1.19765 1.20881 1.20906 1.46498 1.14720 1.55917 1.18492 1.20297 0.82771 0.79381 0.88935 1.90664 1.51422 1.60317 1.40796 1.21567 0.96317 1.01508 0.98018 1.20372 0.97053 1.01195 0.90724 1.21911 0.88920 0.90655 0.94226 1.22817 1.04236 0.97355 1.01128 1.23200 0.91160 0.99646 0.87528 1.68245 1.16337 1.07941 1.31973 1.23286 0.89448 0.88086 0.94223 1.20563 1.03937 0.99132 0.90710 1.68119 1.17297 1.39113 0.98524 0.93190 0.95926 0.94220 0.88361 0.95077 0.92643 0.77974 0.88500 0.89808 0.88934 0.88459 0.83372 0.81566 0.89707 0.89483 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.73 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.62 11.29 55.43 0.63 -23.99 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.71 -14.39 5.02 -54.93 -0.28 -14.66 16 14 C 0.50 9.46 6.40 -10.99 -0.07 9.39 16 15 O -0.55 -12.22 13.12 5.56 0.07 -12.14 16 16 C -0.13 -1.87 5.57 -27.88 -0.16 -2.02 16 17 C -0.06 -0.71 4.94 -27.88 -0.14 -0.85 16 18 C 0.19 2.29 6.20 -82.24 -0.51 1.78 16 19 C -0.23 -2.31 9.80 -39.32 -0.39 -2.69 16 20 C 0.15 1.43 11.30 -17.21 -0.19 1.23 16 21 N -0.53 -6.10 10.33 -10.73 -0.11 -6.21 16 22 C 0.32 3.72 7.64 -157.19 -1.20 2.52 16 23 C -0.09 -0.71 10.32 36.00 0.37 -0.34 16 24 N -0.52 -6.65 9.94 -6.99 -0.07 -6.72 16 25 H 0.05 1.18 7.85 -51.93 -0.41 0.78 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 6.91 8.54 -40.82 -0.35 6.56 16 32 H 0.10 1.30 7.99 -51.93 -0.41 0.89 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.14 7.90 -51.93 -0.41 0.73 16 35 H 0.10 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.15 1.10 8.01 -52.48 -0.42 0.68 16 37 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -31.29 333.48 -8.33 -39.62 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.92 Total: 6.61 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.66 Total: -3.04 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.17 Total: -51.58 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.29 -8.33 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346723939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.488 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds