Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47346 * 180.02562 * 17 16 14 19 19 C 1.38618 * 120.44758 * 124.99780 * 18 17 16 20 20 C 1.38572 * 118.39886 * 180.02562 * 19 18 17 21 21 N 1.32347 * 119.10538 * 0.02562 * 20 19 18 22 22 C 1.31783 * 120.82164 * 359.97438 * 21 20 19 23 23 C 1.50695 * 119.12478 * 180.02562 * 22 21 20 24 24 N 1.31812 * 121.75047 * 359.72339 * 22 21 20 25 25 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 32 32 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 33 33 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 34 34 H 1.09000 * 109.47444 * 300.00712 * 17 16 14 35 35 H 1.09000 * 109.46920 * 60.00019 * 17 16 14 36 36 H 1.08003 * 120.80276 * 0.03124 * 19 18 17 37 37 H 1.08001 * 120.44856 * 179.97438 * 20 19 18 38 38 H 1.09009 * 109.46597 * 90.00448 * 23 22 21 39 39 H 1.08999 * 109.47442 * 209.99817 * 23 22 21 40 40 H 1.08997 * 109.47555 * 330.00710 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 6 -1.3828 3.8936 2.5214 18 6 -1.7815 4.5675 3.8091 19 6 -2.2147 5.8842 3.8080 20 6 -2.5703 6.4621 5.0162 21 7 -2.4846 5.7427 6.1238 22 6 -2.0682 4.4929 6.0867 23 6 -1.9859 3.7088 7.3709 24 7 -1.7273 3.9087 4.9553 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 0.0673 2.6131 3.4684 33 1 0.7277 4.1530 2.8678 34 1 -1.4143 4.6181 1.7076 35 1 -2.0739 3.0781 2.3085 36 1 -2.2738 6.4463 2.8876 37 1 -2.9120 7.4859 5.0537 38 1 -2.9342 3.2010 7.5479 39 1 -1.1873 2.9708 7.2955 40 1 -1.7771 4.3871 8.1981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346723939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = -31.166889 kcal Electronic energy + Delta-G solvation = -20928.042967 eV Core-core repulsion = 17741.365879 eV Total energy + Delta-G solvation = -3186.677088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.06037 -40.64859 -37.10016 -35.95877 -34.33699 -34.27025 -33.07210 -32.08199 -29.47376 -28.99007 -26.77863 -24.93802 -24.05869 -22.84811 -21.76750 -21.00047 -18.91413 -18.53050 -17.68457 -17.14715 -16.80784 -16.68586 -16.25415 -16.05102 -15.90599 -15.09814 -14.71338 -14.60720 -14.22311 -13.94633 -13.61511 -13.47908 -13.31159 -13.21266 -13.14029 -12.98732 -12.83125 -12.69796 -12.25977 -12.13255 -12.00995 -11.79133 -11.57311 -11.50462 -11.02382 -10.64383 -10.49187 -10.30575 -10.19377 -9.57984 -8.15403 -6.32415 -0.06401 0.10387 1.43909 1.45362 1.56842 1.91530 2.36793 2.62534 2.78790 2.97870 3.13975 3.18815 3.56768 3.86016 4.11323 4.15705 4.25659 4.27465 4.50385 4.51499 4.59263 4.62655 4.66403 4.73377 4.79649 4.87645 5.00888 5.08987 5.10365 5.12218 5.28408 5.45966 5.51938 5.58188 5.66358 5.81924 5.95276 6.08263 6.19256 6.76671 7.03945 7.14394 7.35184 7.63651 8.89998 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028833 B = 0.003276 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.860582 B = 8543.748864 C = 8734.072623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.708 5.708 14 C 0.499 3.501 15 O -0.587 6.587 16 C -0.116 4.116 17 C -0.048 4.048 18 C 0.172 3.828 19 C -0.230 4.230 20 C 0.150 3.850 21 N -0.544 5.544 22 C 0.301 3.699 23 C -0.083 4.083 24 N -0.537 5.537 25 H 0.026 0.974 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.173 0.827 37 H 0.203 0.797 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 9.714 16.287 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.357 5.357 14 C 0.286 3.714 15 O -0.468 6.468 16 C -0.156 4.156 17 C -0.086 4.086 18 C 0.026 3.974 19 C -0.251 4.251 20 C -0.015 4.015 21 N -0.259 5.259 22 C 0.034 3.966 23 C -0.141 4.141 24 N -0.253 5.253 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.190 0.810 37 H 0.220 0.780 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.533 9.071 16.297 20.947 hybrid contribution 1.061 0.252 -1.172 1.601 sum -8.472 9.323 15.125 19.684 Atomic orbital electron populations 1.21674 0.96900 0.99072 1.00354 1.21787 0.93836 0.99301 1.01141 1.18349 0.93505 0.89146 0.81610 0.98243 1.21631 0.91615 1.38738 1.06586 0.91167 1.25763 1.03217 0.94445 0.95093 1.70054 1.36928 1.38468 1.09863 0.85343 0.79292 0.77788 0.78178 1.18522 1.20534 1.20993 1.46297 1.15818 1.56114 1.17477 1.21114 0.81623 0.78482 0.90156 1.90652 1.52241 1.61356 1.42580 1.21458 0.97473 1.01819 0.94877 1.20243 0.95841 1.00867 0.91695 1.21827 0.90276 0.91675 0.93595 1.23079 1.03080 0.96500 1.02443 1.23837 0.89965 1.00923 0.86798 1.68327 1.16637 1.08035 1.32916 1.23825 0.89388 0.88618 0.94795 1.20647 1.04551 0.99190 0.89736 1.68092 1.18275 1.39858 0.99102 0.95451 0.93782 0.93605 0.91138 0.94251 0.92646 0.76318 0.87518 0.87775 0.88574 0.90007 0.80962 0.78023 0.88757 0.89232 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.52 71.98 0.61 -4.91 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.11 2.24 44.24 0.10 14.21 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 5 C -0.55 -28.84 8.73 25.60 0.22 -28.62 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.80 5.29 84.65 0.45 1.24 16 8 N -0.91 -52.21 11.29 21.45 0.24 -51.97 16 9 Si 0.97 41.97 29.54 68.60 2.03 44.00 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 13 N -0.71 -28.62 5.02 -446.10 -2.24 -30.86 16 14 C 0.50 18.71 6.40 87.66 0.56 19.27 16 15 O -0.59 -26.41 13.12 -3.03 -0.04 -26.45 16 16 C -0.12 -3.08 5.57 29.85 0.17 -2.92 16 17 C -0.05 -1.19 4.94 29.85 0.15 -1.05 16 18 C 0.17 3.90 6.20 42.58 0.26 4.16 16 19 C -0.23 -3.99 9.80 22.44 0.22 -3.77 16 20 C 0.15 2.44 11.30 84.69 0.96 3.40 16 21 N -0.54 -11.40 10.33 -187.86 -1.94 -13.34 16 22 C 0.30 6.60 7.64 138.75 1.06 7.66 16 23 C -0.08 -1.26 10.32 71.23 0.74 -0.53 16 24 N -0.54 -13.17 9.94 -176.02 -1.75 -14.92 16 25 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 28 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.40 13.90 8.54 -92.70 -0.79 13.10 16 32 H 0.11 2.69 7.99 -2.39 -0.02 2.67 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.10 2.28 7.90 -2.39 -0.02 2.26 16 35 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 36 H 0.17 2.04 8.01 -2.91 -0.02 2.02 16 37 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -68.63 333.48 2.21 -66.42 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.25 Total: 24.80 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 5.66 Total: 2.32 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -5.69 Total: -111.10 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.04 Total: -26.45 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -68.63 2.21 -66.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346723939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.251 kcal (2) G-P(sol) polarization free energy of solvation -68.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds