Wall clock time and date at job start Mon Mar 30 2020 02:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47101 * 180.02562 * 17 16 14 19 19 C 1.38626 * 120.44903 * 124.99989 * 18 17 16 20 20 C 1.38575 * 118.39921 * 180.02562 * 19 18 17 21 21 N 1.32353 * 119.10517 * 359.97438 * 20 19 18 22 22 C 1.31770 * 120.82034 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.12179 * 180.02562 * 22 21 20 24 24 N 1.31809 * 121.75564 * 359.71452 * 22 21 20 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 31 31 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 32 32 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 33 33 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 34 34 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 35 35 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 36 36 H 1.07996 * 120.79874 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.44357 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.47530 * 89.99836 * 23 22 21 39 39 H 1.09007 * 109.47100 * 209.99781 * 23 22 21 40 40 H 1.09000 * 109.46892 * 329.99546 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7357 4.5529 -3.8664 19 6 -2.8871 4.1735 -4.5387 20 6 -3.1989 4.8160 -5.7263 21 7 -2.3927 5.7644 -6.1760 22 6 -1.3061 6.0988 -5.5098 23 6 -0.4155 7.1846 -6.0568 24 7 -0.9806 5.5132 -4.3747 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4384 31 1 2.2954 2.1150 -1.9977 32 1 0.7620 4.1421 -2.8933 33 1 0.1091 2.6000 -3.4965 34 1 -2.0464 3.0703 -2.3637 35 1 -1.3928 4.6121 -1.7606 36 1 -3.5258 3.3961 -4.1463 37 1 -4.0877 4.5463 -6.2773 38 1 -0.7376 8.1499 -5.6663 39 1 0.6147 6.9959 -5.7548 40 1 -0.4795 7.1931 -7.1449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346723941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:33 Heat of formation + Delta-G solvation = -11.591206 kcal Electronic energy + Delta-G solvation = -20989.797295 eV Core-core repulsion = 17803.969072 eV Total energy + Delta-G solvation = -3185.828223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29337 -39.23574 -35.66242 -34.85081 -33.61487 -32.47679 -31.86322 -30.95447 -28.75256 -27.39988 -25.64001 -23.38024 -22.41149 -21.91308 -20.28402 -19.48158 -17.89099 -17.69978 -16.72672 -15.93239 -15.71072 -15.34559 -15.27668 -15.12065 -14.02904 -13.79089 -13.42520 -13.29133 -13.00816 -12.90066 -12.62694 -12.48223 -12.32856 -12.15229 -12.02544 -11.66692 -11.23133 -11.01530 -10.81863 -10.71352 -10.62640 -10.42615 -9.86077 -9.79275 -9.60974 -9.41164 -9.20922 -9.10547 -8.25265 -8.06751 -6.61246 -4.20070 0.68616 0.85892 3.27170 3.40957 3.45929 3.49135 3.61633 3.68110 3.83821 3.97846 4.38316 4.44438 4.75274 4.83986 5.06825 5.07986 5.08999 5.19289 5.22226 5.30283 5.40653 5.65555 5.70129 5.71308 5.97482 6.03562 6.07616 6.09308 6.23818 6.28388 6.69946 6.79205 6.83210 6.97309 7.05331 7.37262 7.43867 7.69557 7.91195 8.24761 8.50468 8.71373 9.00435 9.44750 10.76535 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030341 B = 0.003500 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.611589 B = 7998.920419 C = 8480.180942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.040 0.960 5 C -0.630 4.630 6 H 0.062 0.938 7 C 0.048 3.952 8 N -0.887 5.887 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.502 3.498 15 O -0.554 6.554 16 C -0.133 4.133 17 C -0.055 4.055 18 C 0.188 3.812 19 C -0.234 4.234 20 C 0.150 3.850 21 N -0.529 5.529 22 C 0.318 3.682 23 C -0.086 4.086 24 N -0.515 5.515 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.271 0.729 31 H 0.393 0.607 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 7.487 -13.694 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.147 3.853 4 H 0.058 0.942 5 C -0.667 4.667 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.518 5.518 9 Si 0.857 3.143 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.349 5.349 14 C 0.287 3.713 15 O -0.434 6.434 16 C -0.174 4.174 17 C -0.093 4.093 18 C 0.042 3.958 19 C -0.256 4.256 20 C -0.015 4.015 21 N -0.244 5.244 22 C 0.051 3.949 23 C -0.144 4.144 24 N -0.231 5.231 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.401 7.877 -11.748 20.186 hybrid contribution -0.394 -0.454 -1.778 1.877 sum -14.795 7.422 -13.526 21.376 Atomic orbital electron populations 1.21889 0.97444 0.98765 1.01945 1.22228 0.93667 0.99810 1.01318 1.18994 0.95717 0.88433 0.82200 0.94211 1.21994 0.89817 1.50010 1.04846 0.91976 1.25613 0.96610 0.91667 1.02105 1.70868 1.13923 1.36472 1.30557 0.84218 0.76024 0.77633 0.76433 1.20871 1.20676 1.19934 1.46273 1.14599 1.55938 1.18106 1.20387 0.82675 0.79091 0.89144 1.90655 1.50828 1.60240 1.41670 1.21557 0.97285 1.01494 0.97041 1.20367 0.97019 1.00231 0.91711 1.21886 0.89217 0.89519 0.95173 1.22808 1.00147 1.04233 0.98384 1.23208 0.96915 0.89113 0.92264 1.68250 1.05449 1.15832 1.34892 1.23294 0.90423 0.94221 0.86999 1.20573 0.97943 0.94359 1.01520 1.68121 1.33008 1.09190 1.12737 0.95194 0.93010 0.93283 0.93255 0.91930 0.91884 0.77476 0.88254 0.89742 0.88964 0.88387 0.83400 0.81540 0.89659 0.89449 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.53 37.16 0.32 -2.54 16 2 C -0.13 -2.92 5.37 -26.73 -0.14 -3.07 16 3 C 0.25 5.92 1.84 -69.09 -0.13 5.79 16 4 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -16.92 8.92 -34.44 -0.31 -17.22 16 6 H 0.06 1.75 7.96 -52.49 -0.42 1.33 16 7 C 0.05 1.35 5.15 -17.82 -0.09 1.26 16 8 N -0.89 -26.13 13.70 55.43 0.76 -25.37 16 9 Si 1.03 24.97 26.56 -169.99 -4.51 20.46 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.29 6.34 56.52 0.36 -5.93 16 13 N -0.70 -13.86 5.03 -54.93 -0.28 -14.14 16 14 C 0.50 9.05 6.43 -10.98 -0.07 8.98 16 15 O -0.55 -11.55 13.13 5.55 0.07 -11.47 16 16 C -0.13 -1.79 5.57 -27.88 -0.16 -1.94 16 17 C -0.06 -0.68 4.94 -27.88 -0.14 -0.81 16 18 C 0.19 2.20 6.20 -82.24 -0.51 1.69 16 19 C -0.23 -2.21 9.80 -39.31 -0.39 -2.60 16 20 C 0.15 1.38 11.30 -17.20 -0.19 1.19 16 21 N -0.53 -5.96 10.33 -10.73 -0.11 -6.08 16 22 C 0.32 3.68 7.64 -157.20 -1.20 2.47 16 23 C -0.09 -0.71 10.32 36.01 0.37 -0.34 16 24 N -0.52 -6.55 9.94 -6.99 -0.07 -6.62 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 27 H 0.05 0.95 5.63 -51.93 -0.29 0.66 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.47 5.77 -51.93 -0.30 1.17 16 30 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 31 H 0.39 6.99 8.53 -40.82 -0.35 6.64 16 32 H 0.10 1.32 7.99 -51.93 -0.41 0.90 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 35 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.15 1.02 8.01 -52.49 -0.42 0.60 16 37 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -32.06 330.79 -7.70 -39.75 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.91 Total: 5.60 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.64 Total: -7.13 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.30 Total: -52.20 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -4.51 Total: 20.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.06 -7.70 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346723941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.161 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds