Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47101 * 180.02562 * 17 16 14 19 19 C 1.38626 * 120.44903 * 124.99989 * 18 17 16 20 20 C 1.38575 * 118.39921 * 180.02562 * 19 18 17 21 21 N 1.32353 * 119.10517 * 359.97438 * 20 19 18 22 22 C 1.31770 * 120.82034 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.12179 * 180.02562 * 22 21 20 24 24 N 1.31809 * 121.75564 * 359.71452 * 22 21 20 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 31 31 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 32 32 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 33 33 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 34 34 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 35 35 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 36 36 H 1.07996 * 120.79874 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.44357 * 179.97438 * 20 19 18 38 38 H 1.08996 * 109.47530 * 89.99836 * 23 22 21 39 39 H 1.09007 * 109.47100 * 209.99781 * 23 22 21 40 40 H 1.09000 * 109.46892 * 329.99546 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7357 4.5529 -3.8664 19 6 -2.8871 4.1735 -4.5387 20 6 -3.1989 4.8160 -5.7263 21 7 -2.3927 5.7644 -6.1760 22 6 -1.3061 6.0988 -5.5098 23 6 -0.4155 7.1846 -6.0568 24 7 -0.9806 5.5132 -4.3747 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4384 31 1 2.2954 2.1150 -1.9977 32 1 0.7620 4.1421 -2.8933 33 1 0.1091 2.6000 -3.4965 34 1 -2.0464 3.0703 -2.3637 35 1 -1.3928 4.6121 -1.7606 36 1 -3.5258 3.3961 -4.1463 37 1 -4.0877 4.5463 -6.2773 38 1 -0.7376 8.1499 -5.6663 39 1 0.6147 6.9959 -5.7548 40 1 -0.4795 7.1931 -7.1449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346723941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = -33.100471 kcal Electronic energy + Delta-G solvation = -20990.730007 eV Core-core repulsion = 17803.969072 eV Total energy + Delta-G solvation = -3186.760935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07979 -40.75749 -37.21683 -35.99014 -34.46519 -34.35472 -33.34352 -32.18240 -29.51557 -29.13527 -26.77003 -24.41663 -24.02578 -22.92287 -21.84837 -21.13380 -19.75878 -18.58967 -17.99523 -17.21238 -16.91400 -16.57533 -16.24504 -16.07527 -15.58877 -15.11937 -14.90814 -14.57149 -14.43077 -14.19316 -13.88017 -13.73217 -13.50582 -13.36810 -13.20712 -13.01495 -12.63982 -12.48063 -12.31196 -12.21859 -11.80562 -11.76416 -11.56308 -11.52175 -11.22307 -10.69423 -10.40895 -10.32877 -10.21226 -9.75555 -8.81445 -6.40548 -0.08064 0.09133 1.46401 1.49093 1.70057 1.82227 2.42493 2.48504 2.75393 2.93047 2.95419 3.16824 3.53588 3.81814 4.08112 4.13753 4.19700 4.24633 4.33668 4.42597 4.48819 4.54490 4.61687 4.65204 4.70593 4.85150 4.89132 4.98564 5.08052 5.08971 5.12536 5.24679 5.32905 5.50121 5.56921 5.71570 5.73398 6.03032 6.07096 6.55128 6.89856 7.12931 7.28054 7.49134 8.55076 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030341 B = 0.003500 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.611589 B = 7998.920419 C = 8480.180942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.254 3.746 4 H 0.021 0.979 5 C -0.628 4.628 6 H 0.040 0.960 7 C 0.006 3.994 8 N -0.917 5.917 9 Si 1.064 2.936 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.254 1.254 13 N -0.706 5.706 14 C 0.502 3.498 15 O -0.580 6.580 16 C -0.118 4.118 17 C -0.047 4.047 18 C 0.170 3.830 19 C -0.227 4.227 20 C 0.149 3.851 21 N -0.544 5.544 22 C 0.300 3.700 23 C -0.084 4.084 24 N -0.540 5.540 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.261 0.739 31 H 0.401 0.599 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.176 0.824 37 H 0.204 0.796 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.987 7.392 -14.772 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.149 3.851 4 H 0.039 0.961 5 C -0.666 4.666 6 H 0.058 0.942 7 C -0.197 4.197 8 N -0.550 5.550 9 Si 0.886 3.114 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.178 1.178 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.461 6.461 16 C -0.158 4.158 17 C -0.086 4.086 18 C 0.025 3.975 19 C -0.249 4.249 20 C -0.016 4.016 21 N -0.259 5.259 22 C 0.034 3.966 23 C -0.142 4.142 24 N -0.256 5.256 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.235 0.765 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.193 0.807 37 H 0.220 0.780 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.790 7.793 -12.858 22.538 hybrid contribution 0.327 -0.378 -1.536 1.615 sum -16.463 7.415 -14.394 23.091 Atomic orbital electron populations 1.21765 0.95284 1.00327 1.01581 1.22115 0.95513 0.98332 1.00782 1.18692 0.93302 0.89579 0.83490 0.96121 1.22185 0.91695 1.48734 1.03948 0.94204 1.26695 0.96727 0.91246 1.05051 1.70960 1.15086 1.38927 1.30017 0.83766 0.75855 0.78287 0.73501 1.20643 1.20012 1.17828 1.46153 1.15774 1.56420 1.17131 1.21085 0.81463 0.78113 0.90341 1.90642 1.51402 1.60989 1.43062 1.21464 0.98161 1.01539 0.94670 1.20260 0.96295 1.00136 0.91882 1.21866 0.90418 0.90031 0.95215 1.23090 0.99374 1.04377 0.98031 1.23861 0.97432 0.88040 0.92286 1.68323 1.05721 1.16660 1.35224 1.23782 0.91100 0.94841 0.86924 1.20645 0.97476 0.93957 1.02116 1.68094 1.33996 1.10007 1.13520 0.92640 0.94197 0.92789 0.92954 0.93340 0.92952 0.76454 0.88041 0.87571 0.87966 0.89991 0.80668 0.77977 0.88768 0.89412 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 8.53 71.98 0.61 -4.37 16 2 C -0.13 -5.56 5.37 30.60 0.16 -5.40 16 3 C 0.25 11.93 1.84 44.25 0.08 12.02 16 4 H 0.02 1.07 6.12 -2.39 -0.01 1.06 16 5 C -0.63 -34.16 8.92 25.60 0.23 -33.93 16 6 H 0.04 2.29 7.96 -2.91 -0.02 2.27 16 7 C 0.01 0.32 5.15 84.66 0.44 0.75 16 8 N -0.92 -55.00 13.70 21.45 0.29 -54.70 16 9 Si 1.06 50.33 26.56 68.60 1.82 52.15 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.25 -11.13 6.34 99.48 0.63 -10.49 16 13 N -0.71 -27.37 5.03 -446.10 -2.24 -29.61 16 14 C 0.50 17.48 6.43 87.66 0.56 18.04 16 15 O -0.58 -23.47 13.13 -3.04 -0.04 -23.51 16 16 C -0.12 -2.96 5.57 29.85 0.17 -2.80 16 17 C -0.05 -1.08 4.94 29.85 0.15 -0.94 16 18 C 0.17 3.66 6.20 42.58 0.26 3.93 16 19 C -0.23 -3.63 9.80 22.44 0.22 -3.41 16 20 C 0.15 2.29 11.30 84.69 0.96 3.25 16 21 N -0.54 -11.17 10.33 -187.86 -1.94 -13.11 16 22 C 0.30 6.56 7.64 138.75 1.06 7.62 16 23 C -0.08 -1.30 10.32 71.24 0.74 -0.56 16 24 N -0.54 -13.09 9.94 -176.02 -1.75 -14.84 16 25 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.04 1.58 7.89 -2.39 -0.02 1.56 16 27 H 0.05 1.96 5.63 -2.39 -0.01 1.95 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 2.22 5.77 -2.39 -0.01 2.20 16 30 H 0.26 15.67 8.73 -92.71 -0.81 14.86 16 31 H 0.40 14.05 8.53 -92.71 -0.79 13.26 16 32 H 0.10 2.56 7.99 -2.39 -0.02 2.54 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.10 2.10 7.90 -2.39 -0.02 2.08 16 35 H 0.08 2.13 8.10 -2.39 -0.02 2.11 16 36 H 0.18 1.73 8.01 -2.91 -0.02 1.70 16 37 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -69.20 330.79 1.92 -67.28 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.14 Total: 22.14 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.64 Total: -5.79 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -5.64 Total: -112.26 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.04 Total: -23.51 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.82 Total: 52.15 kcal Total: -69.20 1.92 -67.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346723941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.180 kcal (2) G-P(sol) polarization free energy of solvation -69.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds