Wall clock time and date at job start Mon Mar 30 2020 02:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47109 * 2 1 4 4 H 1.08999 * 109.47498 * 305.08633 * 3 2 1 5 5 N 1.46902 * 109.47396 * 65.08790 * 3 2 1 6 6 C 1.46897 * 111.00077 * 261.98485 * 5 3 2 7 7 C 1.53005 * 109.47140 * 272.65903 * 6 5 3 8 8 C 1.50691 * 115.56191 * 152.68959 * 7 6 5 9 9 H 1.08001 * 120.00156 * 139.51828 * 8 7 6 10 10 C 1.37881 * 120.00567 * 319.51456 * 8 7 6 11 11 N 1.31517 * 119.99432 * 342.43193 * 10 8 7 12 12 Si 1.86795 * 120.00213 * 162.42852 * 10 8 7 13 13 H 1.48493 * 109.46933 * 60.00507 * 12 10 8 14 14 H 1.48510 * 109.46722 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47329 * 299.99847 * 12 10 8 16 16 C 1.53000 * 117.49639 * 6.99698 * 7 6 5 17 17 C 1.53001 * 117.49322 * 298.37733 * 7 6 5 18 18 C 1.50706 * 109.46921 * 185.08810 * 3 2 1 19 19 C 1.38227 * 120.00830 * 266.55770 * 18 3 2 20 20 C 1.38222 * 120.02244 * 179.97438 * 19 18 3 21 21 C 1.38269 * 120.05241 * 0.02562 * 20 19 18 22 22 C 1.38182 * 120.02695 * 359.97438 * 21 20 19 23 23 C 1.38438 * 120.01508 * 86.28258 * 18 3 2 24 24 F 1.35093 * 120.02332 * 359.97438 * 23 18 3 25 25 H 1.09003 * 109.46944 * 299.21612 * 1 2 3 26 26 H 1.09007 * 109.46916 * 59.21091 * 1 2 3 27 27 H 1.08999 * 109.47632 * 179.21083 * 1 2 3 28 28 H 1.09000 * 109.46645 * 239.99526 * 2 1 3 29 29 H 1.08998 * 109.46852 * 120.00125 * 2 1 3 30 30 H 1.00900 * 110.99977 * 138.02967 * 5 3 2 31 31 H 1.08998 * 109.47533 * 152.65141 * 6 5 3 32 32 H 1.09001 * 109.47169 * 32.65547 * 6 5 3 33 33 H 0.97000 * 119.99876 * 184.97590 * 11 10 8 34 34 H 1.09004 * 117.50159 * 0.02562 * 16 7 6 35 35 H 1.09006 * 117.49497 * 145.02196 * 16 7 6 36 36 H 1.09001 * 117.49479 * 214.97851 * 17 7 6 37 37 H 1.09000 * 117.50286 * 359.97438 * 17 7 6 38 38 H 1.07998 * 119.98833 * 359.97438 * 19 18 3 39 39 H 1.08001 * 119.97725 * 180.02562 * 20 19 18 40 40 H 1.08004 * 119.98850 * 179.97438 * 21 20 19 41 41 H 1.07993 * 120.01260 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6042 1.9819 -0.8409 5 7 1.6532 2.0986 1.2561 6 6 0.4388 2.9054 1.0764 7 6 0.8240 4.3083 0.6028 8 6 -0.2172 5.0269 -0.2159 9 1 -0.3927 6.0813 -0.0613 10 6 -0.9459 4.3384 -1.1626 11 7 -0.5207 3.1733 -1.6002 12 14 -2.5370 5.0602 -1.8233 13 1 -2.2569 6.3683 -2.4679 14 1 -3.1241 4.1320 -2.8229 15 1 -3.4946 5.2543 -0.7050 16 6 2.2927 4.5579 0.2543 17 6 1.6981 5.1525 1.5325 18 6 3.5418 1.4443 -0.1260 19 6 4.3307 1.4816 1.0084 20 6 5.7081 1.4827 0.8932 21 6 6.2984 1.4471 -0.3566 22 6 5.5118 1.4097 -1.4921 23 6 4.1318 1.4028 -1.3777 24 9 3.3617 1.3601 -2.4868 25 1 -0.3633 0.5016 0.8970 26 1 -0.3633 0.5261 -0.8829 27 1 -0.3634 -1.0275 -0.0142 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4095 2.6595 1.6189 31 1 -0.0944 2.9755 2.0245 32 1 -0.2035 2.4343 0.3323 33 1 -0.9935 2.7226 -2.3172 34 1 2.9846 3.7224 0.3620 35 1 2.5058 5.2418 -0.5673 36 1 1.5199 6.2277 1.5518 37 1 1.9984 4.7086 2.4816 38 1 3.8707 1.5099 1.9851 39 1 6.3238 1.5115 1.7801 40 1 7.3748 1.4484 -0.4455 41 1 5.9731 1.3823 -2.4681 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348409847.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:38 Heat of formation + Delta-G solvation = 7.386525 kcal Electronic energy + Delta-G solvation = -22754.071022 eV Core-core repulsion = 19549.145774 eV Total energy + Delta-G solvation = -3204.925248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.45348 -39.33183 -37.54785 -35.01258 -32.27366 -30.97161 -30.61886 -30.16658 -26.33759 -25.54251 -23.57617 -22.18572 -21.89558 -21.10920 -19.79339 -18.67824 -17.46384 -16.43285 -16.09189 -15.71151 -15.22179 -14.78432 -14.66013 -14.09128 -13.90216 -13.63674 -13.31579 -12.94018 -12.75092 -12.25450 -12.11187 -11.97908 -11.68188 -11.47967 -11.30493 -10.99483 -10.96053 -10.89148 -10.51181 -10.31537 -10.29222 -10.04705 -9.89474 -9.55907 -9.16617 -8.69654 -8.67374 -8.31372 -7.93982 -7.47899 -6.08509 -4.07742 1.40815 1.43396 3.27326 3.33703 3.37241 3.81942 4.35685 4.57738 4.91627 4.95304 4.98207 5.13904 5.17052 5.48189 5.51526 5.58754 5.83263 5.90853 6.01119 6.12921 6.19867 6.26068 6.36674 6.39849 6.46223 6.51166 6.55839 6.58781 6.62464 6.68436 6.78393 6.85610 6.98520 7.10357 7.15089 7.16488 7.24469 7.35841 7.54723 7.90352 8.04712 8.33733 8.47558 8.86757 9.49097 10.92942 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.006509 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.846411 B = 4300.850375 C = 4533.606276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C 0.114 3.886 4 H 0.111 0.889 5 N -0.686 5.686 6 C 0.074 3.926 7 C 0.032 3.968 8 C -0.495 4.495 9 H 0.058 0.942 10 C 0.074 3.926 11 N -0.868 5.868 12 Si 0.889 3.111 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.211 4.211 17 C -0.215 4.215 18 C -0.105 4.105 19 C -0.091 4.091 20 C -0.133 4.133 21 C -0.105 4.105 22 C -0.159 4.159 23 C 0.105 3.895 24 F -0.132 7.132 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.329 0.671 31 H 0.046 0.954 32 H 0.124 0.876 33 H 0.263 0.737 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 -6.339 2.816 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C 0.005 3.995 4 H 0.129 0.871 5 N -0.318 5.318 6 C -0.054 4.054 7 C 0.030 3.970 8 C -0.532 4.532 9 H 0.076 0.924 10 C -0.129 4.129 11 N -0.504 5.504 12 Si 0.717 3.283 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.249 4.249 17 C -0.253 4.253 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.152 4.152 21 C -0.123 4.123 22 C -0.178 4.178 23 C 0.085 3.915 24 F -0.110 7.110 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.149 0.851 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.070 -7.087 2.928 11.877 hybrid contribution -0.324 1.360 -1.137 1.802 sum 8.746 -5.727 1.791 10.606 Atomic orbital electron populations 1.21768 0.95258 0.99707 1.03641 1.21375 0.96717 0.95076 1.00032 1.20719 0.86975 0.96277 0.95552 0.87113 1.60978 1.08472 1.35779 1.26560 1.22025 0.91772 0.91397 1.00212 1.19750 0.88625 0.93541 0.95073 1.20470 1.17943 0.95182 1.19651 0.92401 1.24927 0.97311 0.94876 0.95803 1.69830 1.38995 1.15786 1.25829 0.86705 0.84172 0.78947 0.78499 1.20464 1.21208 1.20100 1.23134 1.01682 1.02502 0.97579 1.22885 1.10275 0.99035 0.93065 1.20498 0.98206 1.00347 0.91635 1.21007 0.93106 0.98226 0.98550 1.21144 0.94857 1.01670 0.97485 1.20888 0.99516 1.00011 0.91900 1.21086 0.91841 1.04726 1.00108 1.17617 0.88598 1.02586 0.82695 1.91524 1.75226 1.93513 1.50777 0.91885 0.91316 0.94656 0.93353 0.92725 0.85054 0.93580 0.85839 0.92633 0.91229 0.91014 0.90936 0.91514 0.84537 0.85810 0.85666 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.67 37.16 0.32 -2.34 16 2 C -0.09 -1.67 5.59 -26.73 -0.15 -1.82 16 3 C 0.11 2.22 1.28 -68.86 -0.09 2.13 16 4 H 0.11 2.60 6.29 -51.93 -0.33 2.27 16 5 N -0.69 -13.35 5.63 -107.95 -0.61 -13.96 16 6 C 0.07 1.67 4.80 -3.82 -0.02 1.66 16 7 C 0.03 0.77 2.20 -155.66 -0.34 0.43 16 8 C -0.49 -13.25 8.97 -34.44 -0.31 -13.56 16 9 H 0.06 1.57 7.88 -52.49 -0.41 1.16 16 10 C 0.07 1.95 5.04 -17.82 -0.09 1.86 16 11 N -0.87 -22.62 10.42 55.43 0.58 -22.04 16 12 Si 0.89 20.52 29.58 -169.99 -5.03 15.49 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C -0.21 -4.83 9.01 -26.73 -0.24 -5.07 16 17 C -0.22 -4.68 9.57 -26.73 -0.26 -4.94 16 18 C -0.11 -1.84 3.60 -104.55 -0.38 -2.21 16 19 C -0.09 -1.35 8.49 -39.59 -0.34 -1.69 16 20 C -0.13 -1.68 10.04 -39.58 -0.40 -2.07 16 21 C -0.11 -1.28 10.04 -39.59 -0.40 -1.68 16 22 C -0.16 -2.25 10.03 -39.51 -0.40 -2.65 16 23 C 0.10 1.82 7.24 -39.42 -0.29 1.54 16 24 F -0.13 -2.57 16.55 2.25 0.04 -2.53 16 25 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 26 H 0.07 1.39 8.02 -51.93 -0.42 0.97 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.33 6.22 3.94 -39.29 -0.15 6.07 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.12 2.98 3.33 -51.93 -0.17 2.80 16 33 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 34 H 0.07 1.49 3.90 -51.93 -0.20 1.29 16 35 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.07 1.32 7.89 -51.93 -0.41 0.91 16 38 H 0.14 1.94 6.80 -52.49 -0.36 1.58 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 41 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -26.54 323.97 -9.23 -35.77 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -5.73 Total: 12.81 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -3.36 Total: -30.42 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.03 Total: -36.00 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.54 -9.23 -35.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348409847.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.159 kcal (2) G-P(sol) polarization free energy of solvation -26.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds