Wall clock time and date at job start Mon Mar 30 2020 02:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47204 * 2 1 4 4 H 1.09001 * 109.46516 * 55.00162 * 3 2 1 5 5 C 1.50695 * 109.47353 * 174.99821 * 3 2 1 6 6 H 1.08000 * 119.99749 * 119.99845 * 5 3 2 7 7 C 1.37879 * 120.00314 * 300.00954 * 5 3 2 8 8 N 1.31514 * 119.99800 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99906 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47551 * 59.99216 * 9 7 5 11 11 H 1.48505 * 109.46738 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46755 * 299.98753 * 9 7 5 13 13 N 1.46494 * 109.47214 * 295.00265 * 3 2 1 14 14 C 1.34783 * 119.99930 * 84.99791 * 13 3 2 15 15 O 1.21275 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99691 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.69531 * 300.33996 * 16 14 13 18 18 C 1.53266 * 109.58051 * 179.97438 * 16 14 13 19 19 C 1.53146 * 109.49341 * 189.82090 * 18 16 14 20 20 C 1.53402 * 109.23781 * 69.48795 * 19 18 16 21 21 C 1.51038 * 108.21291 * 311.18063 * 20 19 18 22 22 N 1.30090 * 127.39589 * 195.97360 * 21 20 19 23 23 C 1.34286 * 109.21422 * 179.89184 * 22 21 20 24 24 C 1.34853 * 108.07556 * 0.04235 * 23 22 21 25 25 N 1.35428 * 123.98094 * 15.94640 * 21 20 19 26 26 H 1.09000 * 109.47499 * 59.99616 * 1 2 3 27 27 H 1.09003 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47274 * 299.99394 * 1 2 3 29 29 H 1.09001 * 109.47274 * 240.00606 * 2 1 3 30 30 H 1.09000 * 109.47499 * 120.00384 * 2 1 3 31 31 H 0.96998 * 119.99435 * 180.02562 * 8 7 5 32 32 H 0.97000 * 120.00434 * 264.99985 * 13 3 2 33 33 H 1.08996 * 109.46776 * 309.82976 * 18 16 14 34 34 H 1.09007 * 109.46551 * 69.81925 * 18 16 14 35 35 H 1.08994 * 109.50982 * 189.41880 * 19 18 16 36 36 H 1.09004 * 109.51096 * 309.55992 * 19 18 16 37 37 H 1.09001 * 109.71402 * 70.86119 * 20 19 18 38 38 H 1.09001 * 109.71349 * 191.45840 * 20 19 18 39 39 H 1.08007 * 125.96491 * 180.02562 * 23 22 21 40 40 H 1.08000 * 126.65367 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1470 1.8890 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3373 2.1732 9 14 6.0049 0.8813 1.3817 10 1 6.4994 2.2815 1.3821 11 1 6.3977 0.2177 2.6508 12 1 6.5974 0.1473 0.2348 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3668 15 8 -0.3397 2.6319 -0.4343 16 6 0.0361 3.3378 -2.6547 17 1 0.7289 4.1501 -2.8745 18 6 -1.3855 3.8956 -2.5239 19 6 -1.8810 4.3589 -3.8969 20 6 -2.1101 3.1339 -4.7914 21 6 -0.8855 2.2537 -4.7090 22 7 -0.5514 1.2876 -5.5136 23 6 0.6085 0.7506 -5.1018 24 6 1.0067 1.4122 -3.9963 25 7 0.0615 2.3623 -3.7470 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0606 2.9500 32 1 2.2718 2.1233 -1.9977 33 1 -2.0471 3.1180 -2.1422 34 1 -1.3822 4.7403 -1.8348 35 1 -2.8171 4.9050 -3.7807 36 1 -1.1341 5.0084 -4.3534 37 1 -2.9834 2.5825 -4.4431 38 1 -2.2646 3.4546 -5.8216 39 1 1.1311 -0.0685 -5.5735 40 1 1.9009 1.2256 -3.4202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355813948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:21 Heat of formation + Delta-G solvation = 15.719832 kcal Electronic energy + Delta-G solvation = -22524.736530 eV Core-core repulsion = 19340.092602 eV Total energy + Delta-G solvation = -3184.643927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32498 -39.32385 -36.48041 -35.12293 -33.52772 -32.34077 -30.95537 -29.75520 -28.55123 -27.18416 -24.85315 -23.07416 -22.22345 -21.44683 -20.55754 -19.64876 -18.97803 -17.65041 -16.99843 -16.09099 -15.55778 -15.06304 -14.73239 -14.48244 -14.35051 -14.29438 -13.83215 -13.65455 -13.21067 -12.82418 -12.68096 -12.11083 -11.99919 -11.59191 -11.47121 -11.28430 -11.22866 -11.15204 -11.08303 -10.90436 -10.43729 -10.29464 -10.02708 -9.73682 -9.69452 -9.17392 -9.06101 -8.60038 -8.21664 -8.02068 -6.21354 -4.32069 2.13650 2.49237 3.19847 3.25858 3.26235 3.26936 3.41379 3.69335 4.24341 4.27980 4.42361 4.57130 4.74322 4.94582 5.08556 5.10727 5.20809 5.35454 5.56795 5.62080 5.63984 5.71425 5.79386 5.95013 6.09382 6.30948 6.36421 6.40725 6.56097 6.88703 6.94563 7.06300 7.17891 7.25067 7.27481 7.48399 7.58249 7.76905 8.06422 8.21486 8.41035 8.60967 8.84951 9.35304 10.83788 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.005156 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.878498 B = 5428.775302 C = 5730.588651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.699 5.699 14 C 0.497 3.503 15 O -0.529 6.529 16 C 0.112 3.888 17 H 0.108 0.892 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.033 4.033 21 C 0.205 3.795 22 N -0.491 5.491 23 C -0.033 4.033 24 C -0.046 4.046 25 N -0.444 5.444 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.266 0.734 32 H 0.387 0.613 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.170 0.830 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 6.329 -11.220 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.348 5.348 14 C 0.279 3.721 15 O -0.405 6.405 16 C 0.006 3.994 17 H 0.126 0.874 18 C -0.153 4.153 19 C -0.163 4.163 20 C -0.072 4.072 21 C -0.057 4.057 22 N -0.210 5.210 23 C -0.180 4.180 24 C -0.179 4.179 25 N -0.129 5.129 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.221 0.779 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.187 0.813 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.706 6.025 -10.861 14.617 hybrid contribution 2.056 0.070 0.545 2.129 sum -5.649 6.095 -10.316 13.247 Atomic orbital electron populations 1.21824 0.98384 0.98232 1.00943 1.21925 0.92541 0.99561 1.02456 1.18872 0.94432 0.89294 0.80506 0.93158 1.21142 0.90441 1.39617 1.06524 0.92149 1.24873 0.98711 0.94597 0.95285 1.69877 1.35354 1.37207 1.09290 0.86499 0.84645 0.78351 0.77575 1.20175 1.21055 1.20067 1.46778 1.14185 1.55036 1.18844 1.20081 0.83442 0.80190 0.88359 1.90714 1.51221 1.58660 1.39914 1.21924 1.01193 0.91215 0.85113 0.87405 1.21729 0.92984 1.02677 0.97902 1.21718 1.02602 0.97230 0.94700 1.20189 0.91943 0.93339 1.01702 1.23272 0.94562 0.99147 0.88690 1.70028 1.14219 1.09168 1.27554 1.22293 0.95295 1.03256 0.97200 1.22771 0.97841 0.95166 1.02136 1.45254 1.19004 1.26782 1.21813 0.94559 0.95715 0.93208 0.94914 0.88129 0.92373 0.77873 0.89495 0.88802 0.89695 0.91179 0.89341 0.88881 0.81307 0.80531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.15 0.32 -2.71 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.47 2.24 -69.08 -0.15 6.31 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.32 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.70 -13.54 4.34 -54.93 -0.24 -13.78 16 14 C 0.50 9.11 5.75 -10.98 -0.06 9.05 16 15 O -0.53 -11.36 12.97 5.56 0.07 -11.29 16 16 C 0.11 1.56 3.44 -68.96 -0.24 1.32 16 17 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 18 C -0.11 -1.35 4.68 -26.52 -0.12 -1.47 16 19 C -0.12 -1.09 5.96 -26.45 -0.16 -1.25 16 20 C -0.03 -0.34 6.33 -27.51 -0.17 -0.51 16 21 C 0.21 2.97 7.65 -155.24 -1.19 1.78 16 22 N -0.49 -7.94 11.24 -10.62 -0.12 -8.06 16 23 C -0.03 -0.50 11.87 -17.68 -0.21 -0.71 16 24 C -0.05 -0.69 10.45 -16.76 -0.18 -0.87 16 25 N -0.44 -6.48 2.98 -107.92 -0.32 -6.80 16 26 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.39 6.62 6.15 -40.82 -0.25 6.37 16 33 H 0.09 1.19 7.76 -51.93 -0.40 0.78 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.17 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.18 2.53 5.82 -52.49 -0.31 2.23 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -30.17 316.01 -8.65 -38.83 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.71 Total: 9.07 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.71 Total: -4.39 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.05 Total: -51.95 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.29 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.17 -8.65 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355813948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.546 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds