Wall clock time and date at job start Mon Mar 30 2020 02:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47204 * 2 1 4 4 H 1.09001 * 109.46516 * 55.00162 * 3 2 1 5 5 C 1.50695 * 109.47353 * 174.99821 * 3 2 1 6 6 H 1.08000 * 119.99749 * 119.99845 * 5 3 2 7 7 C 1.37879 * 120.00314 * 300.00954 * 5 3 2 8 8 N 1.31514 * 119.99800 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99906 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47551 * 59.99216 * 9 7 5 11 11 H 1.48505 * 109.46738 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46755 * 299.98753 * 9 7 5 13 13 N 1.46494 * 109.47214 * 295.00265 * 3 2 1 14 14 C 1.34783 * 119.99930 * 84.99791 * 13 3 2 15 15 O 1.21275 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99691 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.69531 * 300.33996 * 16 14 13 18 18 C 1.53266 * 109.58051 * 179.97438 * 16 14 13 19 19 C 1.53146 * 109.49341 * 189.82090 * 18 16 14 20 20 C 1.53402 * 109.23781 * 69.48795 * 19 18 16 21 21 C 1.51038 * 108.21291 * 311.18063 * 20 19 18 22 22 N 1.30090 * 127.39589 * 195.97360 * 21 20 19 23 23 C 1.34286 * 109.21422 * 179.89184 * 22 21 20 24 24 C 1.34853 * 108.07556 * 0.04235 * 23 22 21 25 25 N 1.35428 * 123.98094 * 15.94640 * 21 20 19 26 26 H 1.09000 * 109.47499 * 59.99616 * 1 2 3 27 27 H 1.09003 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47274 * 299.99394 * 1 2 3 29 29 H 1.09001 * 109.47274 * 240.00606 * 2 1 3 30 30 H 1.09000 * 109.47499 * 120.00384 * 2 1 3 31 31 H 0.96998 * 119.99435 * 180.02562 * 8 7 5 32 32 H 0.97000 * 120.00434 * 264.99985 * 13 3 2 33 33 H 1.08996 * 109.46776 * 309.82976 * 18 16 14 34 34 H 1.09007 * 109.46551 * 69.81925 * 18 16 14 35 35 H 1.08994 * 109.50982 * 189.41880 * 19 18 16 36 36 H 1.09004 * 109.51096 * 309.55992 * 19 18 16 37 37 H 1.09001 * 109.71402 * 70.86119 * 20 19 18 38 38 H 1.09001 * 109.71349 * 191.45840 * 20 19 18 39 39 H 1.08007 * 125.96491 * 180.02562 * 23 22 21 40 40 H 1.08000 * 126.65367 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1239 6 1 4.1470 1.8890 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3373 2.1732 9 14 6.0049 0.8813 1.3817 10 1 6.4994 2.2815 1.3821 11 1 6.3977 0.2177 2.6508 12 1 6.5974 0.1473 0.2348 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3668 15 8 -0.3397 2.6319 -0.4343 16 6 0.0361 3.3378 -2.6547 17 1 0.7289 4.1501 -2.8745 18 6 -1.3855 3.8956 -2.5239 19 6 -1.8810 4.3589 -3.8969 20 6 -2.1101 3.1339 -4.7914 21 6 -0.8855 2.2537 -4.7090 22 7 -0.5514 1.2876 -5.5136 23 6 0.6085 0.7506 -5.1018 24 6 1.0067 1.4122 -3.9963 25 7 0.0615 2.3623 -3.7470 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0606 2.9500 32 1 2.2718 2.1233 -1.9977 33 1 -2.0471 3.1180 -2.1422 34 1 -1.3822 4.7403 -1.8348 35 1 -2.8171 4.9050 -3.7807 36 1 -1.1341 5.0084 -4.3534 37 1 -2.9834 2.5825 -4.4431 38 1 -2.2646 3.4546 -5.8216 39 1 1.1311 -0.0685 -5.5735 40 1 1.9009 1.2256 -3.4202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355813948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:21 Heat of formation + Delta-G solvation = -2.354700 kcal Electronic energy + Delta-G solvation = -22525.520300 eV Core-core repulsion = 19340.092602 eV Total energy + Delta-G solvation = -3185.427698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.44558 -40.84220 -37.68105 -36.73591 -34.80888 -34.02696 -32.71977 -30.81629 -29.67467 -29.00070 -26.09218 -24.84713 -23.18316 -22.74938 -21.99633 -21.41663 -19.98873 -19.20445 -18.18251 -17.76411 -17.28472 -16.44831 -16.08332 -15.90442 -15.64361 -15.28362 -15.00144 -14.84735 -14.66520 -14.51634 -13.77726 -13.71863 -13.50777 -13.23098 -12.99543 -12.95882 -12.68858 -12.38114 -12.22365 -12.09048 -12.00478 -11.97725 -11.66748 -11.29555 -11.11612 -10.91825 -10.58713 -10.40861 -9.77910 -9.31396 -8.19163 -6.36963 0.98090 1.24535 1.44726 1.45456 1.53343 2.09493 2.14917 2.23066 2.46057 3.10846 3.25383 3.44554 3.62519 3.73325 3.83854 4.15610 4.25850 4.40954 4.45149 4.47844 4.55510 4.66361 4.68089 4.82487 4.91958 4.98568 4.99349 5.08699 5.17057 5.27398 5.31440 5.34575 5.44800 5.54135 5.69830 5.77360 5.81972 6.10544 6.16604 6.68315 6.76529 7.09377 7.23029 7.39105 8.85838 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.005156 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.878498 B = 5428.775302 C = 5730.588651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 C 0.280 3.720 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.697 5.697 14 C 0.494 3.506 15 O -0.563 6.563 16 C 0.121 3.879 17 H 0.136 0.864 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.035 4.035 21 C 0.205 3.795 22 N -0.520 5.520 23 C -0.043 4.043 24 C -0.061 4.061 25 N -0.448 5.448 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.029 0.971 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.186 0.814 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 7.569 -13.030 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.157 4.157 3 C 0.177 3.823 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.347 5.347 14 C 0.278 3.722 15 O -0.442 6.442 16 C 0.015 3.985 17 H 0.153 0.847 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.074 4.074 21 C -0.058 4.058 22 N -0.239 5.239 23 C -0.190 4.190 24 C -0.194 4.194 25 N -0.133 5.133 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.203 0.797 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.629 7.276 -12.714 16.516 hybrid contribution 1.978 -0.325 1.110 2.291 sum -5.651 6.951 -11.604 14.659 Atomic orbital electron populations 1.21644 0.97298 0.98948 0.99899 1.21768 0.93364 0.99274 1.01325 1.18405 0.93804 0.89033 0.81030 0.97878 1.21495 0.91207 1.39293 1.06811 0.91039 1.25719 1.03138 0.94246 0.94991 1.70028 1.37150 1.38110 1.09820 0.85457 0.79251 0.78464 0.77532 1.19611 1.21302 1.19026 1.46537 1.15219 1.55186 1.17773 1.20855 0.82342 0.79291 0.89683 1.90699 1.51995 1.59706 1.41771 1.21956 1.03336 0.90936 0.82264 0.84661 1.21788 0.90955 1.02219 1.00190 1.21704 1.04381 0.96693 0.92127 1.20442 0.90215 0.93361 1.03368 1.24101 0.95095 0.98785 0.87803 1.70053 1.14872 1.10278 1.28726 1.22663 0.95320 1.03647 0.97331 1.22881 0.98306 0.95787 1.02448 1.45334 1.19087 1.26923 1.21956 0.94487 0.94016 0.95218 0.94251 0.90822 0.92539 0.76373 0.91755 0.87767 0.86673 0.89825 0.88837 0.86914 0.79737 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.12 -5.72 5.45 30.59 0.17 -5.55 16 3 C 0.28 13.74 2.24 44.25 0.10 13.84 16 4 H 0.00 0.19 7.58 -2.39 -0.02 0.18 16 5 C -0.55 -27.89 8.73 25.60 0.22 -27.67 16 6 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 1.03 5.29 84.66 0.45 1.47 16 8 N -0.91 -50.89 11.29 21.45 0.24 -50.65 16 9 Si 0.97 40.88 29.54 68.60 2.03 42.91 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 13 N -0.70 -27.01 4.34 -446.10 -1.94 -28.95 16 14 C 0.49 17.99 5.75 87.66 0.50 18.50 16 15 O -0.56 -24.63 12.97 -3.01 -0.04 -24.67 16 16 C 0.12 3.15 3.44 44.34 0.15 3.30 16 17 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 18 C -0.11 -2.40 4.68 30.73 0.14 -2.26 16 19 C -0.11 -1.53 5.96 30.78 0.18 -1.35 16 20 C -0.04 -0.62 6.33 30.09 0.19 -0.43 16 21 C 0.20 5.51 7.65 138.23 1.06 6.57 16 22 N -0.52 -16.10 11.24 -187.51 -2.11 -18.20 16 23 C -0.04 -1.26 11.87 83.54 0.99 -0.27 16 24 C -0.06 -1.78 10.45 83.22 0.87 -0.91 16 25 N -0.45 -12.35 2.98 -495.34 -1.47 -13.83 16 26 H 0.04 1.63 5.64 -2.39 -0.01 1.62 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.03 1.42 7.85 -2.39 -0.02 1.40 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 4.00 5.95 -2.39 -0.01 3.98 16 31 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.40 13.41 6.15 -92.71 -0.57 12.84 16 33 H 0.06 1.68 7.76 -2.39 -0.02 1.66 16 34 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.19 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.18 4.97 5.82 -2.91 -0.02 4.96 16 Total: -1.00 -66.61 316.01 2.83 -63.78 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.48 Total: 29.21 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.64 Total: 0.40 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -5.28 Total: -111.62 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.04 Total: -24.67 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -66.61 2.83 -63.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355813948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.421 kcal (2) G-P(sol) polarization free energy of solvation -66.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds