Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46793 * 120.00131 * 9 7 5 12 12 H 1.48500 * 109.47000 * 240.00224 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21284 * 120.00486 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99999 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.58202 * 60.27226 * 16 14 13 18 18 C 1.53261 * 109.58207 * 180.68619 * 16 14 13 19 19 C 1.53136 * 109.50959 * 170.13178 * 18 16 14 20 20 C 1.53405 * 109.23946 * 290.52332 * 19 18 16 21 21 C 1.51044 * 108.20272 * 48.84446 * 20 19 18 22 22 N 1.30092 * 127.39032 * 163.92944 * 21 20 19 23 23 C 1.34286 * 109.21069 * 180.12207 * 22 21 20 24 24 C 1.34849 * 108.07580 * 359.97438 * 23 22 21 25 25 N 1.35429 * 123.98115 * 344.01525 * 21 20 19 26 26 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 27 27 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 28 28 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 30 30 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 31 31 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 33 33 H 1.08991 * 109.46993 * 290.14799 * 18 16 14 34 34 H 1.09005 * 109.46295 * 50.13185 * 18 16 14 35 35 H 1.08993 * 109.51319 * 170.59467 * 19 18 16 36 36 H 1.08998 * 109.54108 * 50.47141 * 19 18 16 37 37 H 1.08989 * 109.72017 * 289.16528 * 20 19 18 38 38 H 1.09006 * 109.71540 * 168.51724 * 20 19 18 39 39 H 1.08003 * 125.95634 * 180.02562 * 23 22 21 40 40 H 1.08004 * 126.65463 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.5988 1.5451 0.1936 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5191 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0363 3.3376 -2.6549 17 1 0.0620 2.6133 -3.4690 18 6 -1.3784 3.9110 -2.5181 19 6 -1.6886 4.8007 -3.7252 20 6 -0.8312 6.0706 -3.6509 21 6 0.5982 5.6600 -3.3871 22 7 1.6686 6.3839 -3.5372 23 6 2.7454 5.6557 -3.2002 24 6 2.3220 4.4313 -2.8259 25 7 0.9640 4.4338 -2.9435 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8294 -0.0618 2.9495 32 1 2.2719 2.1231 -1.9978 33 1 -2.0987 3.0942 -2.4742 34 1 -1.4439 4.5024 -1.6048 35 1 -2.7440 5.0730 -3.7152 36 1 -1.4606 4.2608 -4.6443 37 1 -1.1864 6.7072 -2.8407 38 1 -0.8903 6.6101 -4.5962 39 1 3.7714 5.9923 -3.2240 40 1 2.9392 3.6085 -2.4963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355813949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = 15.789816 kcal Electronic energy + Delta-G solvation = -22420.887174 eV Core-core repulsion = 19236.246281 eV Total energy + Delta-G solvation = -3184.640893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.30024 -39.32630 -36.47306 -35.12523 -33.53265 -32.33806 -30.95158 -29.74834 -28.55248 -27.17864 -24.85157 -23.08556 -22.22020 -21.40982 -20.58085 -19.65113 -18.96717 -17.61616 -17.06541 -16.01356 -15.52748 -15.06371 -14.77866 -14.53548 -14.33569 -14.27101 -13.81568 -13.66545 -13.07684 -12.83468 -12.69690 -12.21092 -11.94656 -11.62985 -11.46002 -11.30910 -11.22755 -11.15241 -11.03966 -10.92620 -10.42966 -10.30423 -9.98006 -9.77849 -9.68478 -9.17437 -9.05444 -8.60379 -8.18116 -8.03247 -6.21466 -4.31642 2.15823 2.51038 3.18961 3.27371 3.29256 3.29766 3.41569 3.69619 4.25089 4.28687 4.43626 4.57943 4.74733 4.94860 5.09763 5.10891 5.21566 5.36603 5.59306 5.63206 5.65298 5.72149 5.80342 5.98153 6.09781 6.26402 6.31070 6.42786 6.51671 6.88826 6.91995 7.04161 7.17117 7.24568 7.27648 7.47088 7.58144 7.76445 8.05373 8.23937 8.40718 8.61427 8.84826 9.35813 10.83889 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.005792 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.442655 B = 4832.758397 C = 5956.034244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.699 5.699 14 C 0.497 3.503 15 O -0.529 6.529 16 C 0.113 3.887 17 H 0.107 0.893 18 C -0.115 4.115 19 C -0.124 4.124 20 C -0.033 4.033 21 C 0.204 3.796 22 N -0.491 5.491 23 C -0.033 4.033 24 C -0.045 4.045 25 N -0.445 5.445 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.170 0.830 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 5.130 -11.714 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.348 5.348 14 C 0.279 3.721 15 O -0.405 6.405 16 C 0.006 3.994 17 H 0.125 0.875 18 C -0.153 4.153 19 C -0.162 4.162 20 C -0.071 4.071 21 C -0.058 4.058 22 N -0.210 5.210 23 C -0.180 4.180 24 C -0.178 4.178 25 N -0.130 5.130 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.187 0.813 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -7.842 5.655 -11.046 14.680 hybrid contribution 1.555 -1.072 0.142 1.894 sum -6.288 4.583 -10.904 13.395 Atomic orbital electron populations 1.21841 0.98354 0.98233 1.01051 1.21949 0.92593 0.99645 1.02520 1.18881 0.94558 0.89202 0.80537 0.93182 1.21207 0.90401 1.39236 1.06593 0.92019 1.24877 0.98752 0.94640 0.95257 1.69893 1.35178 1.37413 1.09329 0.86387 0.84630 0.77824 0.78269 1.19626 1.20814 1.20823 1.46784 1.14064 1.55151 1.18847 1.20092 0.83593 0.80169 0.88252 1.90715 1.51167 1.59673 1.38980 1.21915 0.90735 0.88535 0.98194 0.87497 1.21721 0.92705 1.00942 0.99905 1.21714 1.00561 0.95639 0.98326 1.20188 0.85458 0.97888 1.03613 1.23275 0.97068 0.82113 1.03329 1.70028 0.97408 1.31650 1.21890 1.22300 0.98209 0.91069 1.06461 1.22819 0.83158 1.02429 1.09406 1.45257 1.06425 1.11950 1.49357 0.93079 0.94570 0.95621 0.94924 0.88051 0.92502 0.77856 0.88840 0.89477 0.89703 0.91201 0.89331 0.88886 0.81266 0.80353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.52 37.16 0.32 -2.57 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.45 2.24 -69.08 -0.15 6.29 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.55 8.73 -34.44 -0.30 -13.85 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.00 11.29 55.43 0.63 -23.38 16 9 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.70 -13.55 4.35 -54.93 -0.24 -13.79 16 14 C 0.50 9.12 5.76 -10.99 -0.06 9.06 16 15 O -0.53 -11.38 12.98 5.55 0.07 -11.30 16 16 C 0.11 1.57 3.44 -68.96 -0.24 1.34 16 17 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.11 -1.35 4.68 -26.53 -0.12 -1.47 16 19 C -0.12 -1.10 5.96 -26.45 -0.16 -1.26 16 20 C -0.03 -0.34 6.33 -27.51 -0.17 -0.52 16 21 C 0.20 3.01 7.65 -155.23 -1.19 1.83 16 22 N -0.49 -8.12 11.24 -10.62 -0.12 -8.24 16 23 C -0.03 -0.52 11.87 -17.68 -0.21 -0.73 16 24 C -0.05 -0.70 10.44 -16.76 -0.18 -0.87 16 25 N -0.44 -6.64 2.98 -107.91 -0.32 -6.96 16 26 H 0.05 1.15 7.85 -51.93 -0.41 0.75 16 27 H 0.04 0.72 5.65 -51.93 -0.29 0.43 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.39 6.63 6.07 -40.82 -0.25 6.38 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.17 2.24 8.06 -52.48 -0.42 1.82 16 40 H 0.18 2.66 5.77 -52.48 -0.30 2.36 16 LS Contribution 315.91 15.07 4.76 4.76 Total: -1.00 -30.33 315.91 -8.65 -38.98 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.70 Total: 9.03 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.71 Total: -4.20 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.05 Total: -52.37 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.33 -8.65 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355813949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.768 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds