Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46793 * 120.00131 * 9 7 5 12 12 H 1.48500 * 109.47000 * 240.00224 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21284 * 120.00486 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99999 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.58202 * 60.27226 * 16 14 13 18 18 C 1.53261 * 109.58207 * 180.68619 * 16 14 13 19 19 C 1.53136 * 109.50959 * 170.13178 * 18 16 14 20 20 C 1.53405 * 109.23946 * 290.52332 * 19 18 16 21 21 C 1.51044 * 108.20272 * 48.84446 * 20 19 18 22 22 N 1.30092 * 127.39032 * 163.92944 * 21 20 19 23 23 C 1.34286 * 109.21069 * 180.12207 * 22 21 20 24 24 C 1.34849 * 108.07580 * 359.97438 * 23 22 21 25 25 N 1.35429 * 123.98115 * 344.01525 * 21 20 19 26 26 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 27 27 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 28 28 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 30 30 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 31 31 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 33 33 H 1.08991 * 109.46993 * 290.14799 * 18 16 14 34 34 H 1.09005 * 109.46295 * 50.13185 * 18 16 14 35 35 H 1.08993 * 109.51319 * 170.59467 * 19 18 16 36 36 H 1.08998 * 109.54108 * 50.47141 * 19 18 16 37 37 H 1.08989 * 109.72017 * 289.16528 * 20 19 18 38 38 H 1.09006 * 109.71540 * 168.51724 * 20 19 18 39 39 H 1.08003 * 125.95634 * 180.02562 * 23 22 21 40 40 H 1.08004 * 126.65463 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.5988 1.5451 0.1936 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5191 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0363 3.3376 -2.6549 17 1 0.0620 2.6133 -3.4690 18 6 -1.3784 3.9110 -2.5181 19 6 -1.6886 4.8007 -3.7252 20 6 -0.8312 6.0706 -3.6509 21 6 0.5982 5.6600 -3.3871 22 7 1.6686 6.3839 -3.5372 23 6 2.7454 5.6557 -3.2002 24 6 2.3220 4.4313 -2.8259 25 7 0.9640 4.4338 -2.9435 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.8294 -0.0618 2.9495 32 1 2.2719 2.1231 -1.9978 33 1 -2.0987 3.0942 -2.4742 34 1 -1.4439 4.5024 -1.6048 35 1 -2.7440 5.0730 -3.7152 36 1 -1.4606 4.2608 -4.6443 37 1 -1.1864 6.7072 -2.8407 38 1 -0.8903 6.6101 -4.5962 39 1 3.7714 5.9923 -3.2240 40 1 2.9392 3.6085 -2.4963 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355813949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = -2.579686 kcal Electronic energy + Delta-G solvation = -22421.683735 eV Core-core repulsion = 19236.246281 eV Total energy + Delta-G solvation = -3185.437454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44847 -40.84603 -37.67685 -36.73281 -34.82224 -34.04336 -32.65966 -30.82826 -29.70940 -28.96908 -26.10477 -24.82437 -23.19232 -22.72137 -22.03006 -21.40115 -19.98710 -19.18643 -18.30824 -17.65772 -17.26205 -16.44890 -16.09892 -15.98577 -15.60860 -15.29696 -15.07322 -14.78235 -14.57533 -14.44897 -13.91067 -13.70768 -13.44982 -13.22235 -13.01559 -12.91947 -12.73430 -12.36351 -12.18735 -12.08816 -11.98448 -11.97227 -11.62900 -11.28215 -11.09615 -10.94343 -10.59545 -10.41513 -9.76937 -9.32625 -8.20095 -6.37170 0.96862 1.24944 1.41724 1.44172 1.54762 2.08299 2.14115 2.23356 2.45169 3.10322 3.25296 3.43918 3.62558 3.73213 3.83403 4.15567 4.25721 4.44946 4.45872 4.53615 4.55376 4.66690 4.71666 4.82447 4.92078 4.98597 5.01025 5.08869 5.21998 5.27030 5.30819 5.38421 5.46246 5.55139 5.72110 5.76158 5.83253 6.12119 6.16501 6.68599 6.76288 7.08200 7.22812 7.38869 8.85298 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.005792 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.442655 B = 4832.758397 C = 5956.034244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.697 5.697 14 C 0.493 3.507 15 O -0.563 6.563 16 C 0.121 3.879 17 H 0.139 0.861 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.035 4.035 21 C 0.204 3.796 22 N -0.521 5.521 23 C -0.044 4.044 24 C -0.062 4.062 25 N -0.449 5.449 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.185 0.815 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.801 5.381 -14.010 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.347 5.347 14 C 0.278 3.722 15 O -0.442 6.442 16 C 0.015 3.985 17 H 0.156 0.844 18 C -0.151 4.151 19 C -0.149 4.149 20 C -0.074 4.074 21 C -0.058 4.058 22 N -0.240 5.240 23 C -0.191 4.191 24 C -0.195 4.195 25 N -0.135 5.135 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.202 0.798 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.371 5.917 -13.383 16.858 hybrid contribution 1.690 -1.099 0.887 2.203 sum -6.680 4.818 -12.496 14.967 Atomic orbital electron populations 1.21684 0.96711 0.99411 1.00321 1.21790 0.93998 0.98810 1.01500 1.18423 0.93805 0.89290 0.80892 0.98446 1.21562 0.91282 1.38822 1.06830 0.91057 1.25710 1.03068 0.94373 0.95017 1.70039 1.36947 1.38316 1.09874 0.85377 0.79423 0.77837 0.78213 1.18378 1.21268 1.20400 1.46547 1.15091 1.55286 1.17779 1.20869 0.82512 0.79334 0.89533 1.90703 1.52034 1.60667 1.40785 1.21987 0.91567 0.88806 0.96101 0.84402 1.21787 0.91351 1.01604 1.00398 1.21704 1.01922 0.94081 0.97177 1.20455 0.83079 0.99082 1.04773 1.24141 0.98458 0.81538 1.01705 1.70050 0.98199 1.32446 1.23312 1.22662 0.99030 0.91188 1.06221 1.22911 0.83777 1.02618 1.10165 1.45358 1.06254 1.12388 1.49461 0.95575 0.93454 0.93375 0.93835 0.90978 0.92587 0.76361 0.87519 0.91938 0.86613 0.89705 0.88895 0.86865 0.79805 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.52 71.98 0.61 -4.60 16 2 C -0.12 -5.73 5.45 30.59 0.17 -5.56 16 3 C 0.28 13.69 2.24 44.24 0.10 13.79 16 4 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 5 C -0.55 -27.94 8.73 25.60 0.22 -27.72 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -51.20 11.29 21.45 0.24 -50.96 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 13 N -0.70 -27.00 4.35 -446.10 -1.94 -28.94 16 14 C 0.49 17.93 5.76 87.66 0.50 18.43 16 15 O -0.56 -24.59 12.98 -3.04 -0.04 -24.63 16 16 C 0.12 3.14 3.44 44.34 0.15 3.29 16 17 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.11 -2.39 4.68 30.73 0.14 -2.24 16 19 C -0.11 -1.52 5.96 30.78 0.18 -1.34 16 20 C -0.04 -0.63 6.33 30.09 0.19 -0.44 16 21 C 0.20 5.65 7.65 138.23 1.06 6.71 16 22 N -0.52 -16.66 11.24 -187.51 -2.11 -18.77 16 23 C -0.04 -1.36 11.87 83.54 0.99 -0.37 16 24 C -0.06 -1.88 10.44 83.22 0.87 -1.01 16 25 N -0.45 -12.74 2.98 -495.33 -1.47 -14.22 16 26 H 0.03 1.19 7.85 -2.39 -0.02 1.17 16 27 H 0.05 1.85 5.65 -2.39 -0.01 1.84 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 3.84 5.95 -2.38 -0.01 3.83 16 31 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.40 13.43 6.07 -92.71 -0.56 12.86 16 33 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.65 7.77 -2.38 -0.02 1.63 16 35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.18 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.18 5.26 5.77 -2.91 -0.02 5.24 16 Total: -1.00 -67.71 315.91 2.83 -64.88 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.49 Total: 28.81 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.64 Total: 0.37 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -5.28 Total: -112.88 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.04 Total: -24.63 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -67.71 2.83 -64.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355813949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.300 kcal (2) G-P(sol) polarization free energy of solvation -67.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds