Wall clock time and date at job start Mon Mar 30 2020 02:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.35195 * 126.00208 * 274.71829 * 4 2 1 6 6 C 1.34577 * 107.61209 * 179.79770 * 5 4 2 7 7 C 1.40483 * 108.03902 * 0.52260 * 6 5 4 8 8 N 1.30130 * 108.22838 * 359.61108 * 7 6 5 9 9 C 1.50954 * 123.48922 * 179.44852 * 7 6 5 10 10 C 1.53370 * 108.20331 * 343.47553 * 9 7 6 11 11 H 1.08998 * 109.43683 * 290.54602 * 10 9 7 12 12 N 1.46504 * 109.38086 * 170.68268 * 10 9 7 13 13 C 1.34777 * 119.99933 * 84.74901 * 12 10 9 14 14 O 1.21688 * 119.99676 * 0.02562 * 13 12 10 15 15 C 1.46370 * 119.99883 * 180.02562 * 13 12 10 16 16 H 1.08007 * 120.00211 * 359.97438 * 15 13 12 17 17 C 1.40053 * 120.00122 * 180.02562 * 15 13 12 18 18 N 1.30676 * 119.99434 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00187 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46815 * 59.99889 * 19 17 15 21 21 H 1.48492 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47216 * 299.99979 * 19 17 15 23 23 C 1.53036 * 109.74633 * 50.63147 * 10 9 7 24 24 C 1.50886 * 128.32272 * 180.42188 * 6 5 4 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 29 29 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 31 31 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 32 32 H 1.07991 * 126.19565 * 359.93686 * 5 4 2 33 33 H 1.08996 * 109.71348 * 103.16131 * 9 7 6 34 34 H 1.09002 * 109.71453 * 223.80645 * 9 7 6 35 35 H 0.96997 * 119.99799 * 264.75762 * 12 10 9 36 36 H 0.97001 * 119.99518 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.43362 * 168.17735 * 23 10 9 38 38 H 1.09004 * 109.42839 * 48.31856 * 23 10 9 39 39 H 1.09004 * 109.71593 * 283.32459 * 24 6 5 40 40 H 1.08995 * 109.72024 * 43.97811 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1984 -0.1361 2.4161 6 6 2.6528 -1.0997 3.2383 7 6 2.7676 -2.2867 2.4958 8 7 2.3870 -2.0420 1.2757 9 6 3.2605 -3.5892 3.0783 10 6 3.9705 -3.2834 4.4029 11 1 4.9023 -2.7549 4.2015 12 7 4.2631 -4.5389 5.0989 13 6 5.3815 -5.2296 4.8012 14 8 6.1484 -4.8100 3.9546 15 6 5.6735 -6.4843 5.4961 16 1 4.9930 -6.8564 6.2477 17 6 6.8359 -7.2018 5.1871 18 7 7.6595 -6.7512 4.2781 19 14 7.2090 -8.8026 6.0745 20 1 6.1122 -9.7728 5.8272 21 1 8.4879 -9.3626 5.5685 22 1 7.3231 -8.5455 7.5326 23 6 3.0711 -2.4117 5.2824 24 6 2.9990 -0.9933 4.7031 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.0095 0.8932 2.6829 33 1 2.4160 -4.2543 3.2585 34 1 3.9593 -4.0601 2.3868 35 1 3.6518 -4.8731 5.7738 36 1 8.4644 -7.2483 4.0638 37 1 3.4806 -2.3708 6.2917 38 1 2.0698 -2.8413 5.3151 39 1 3.9640 -0.4996 4.8179 40 1 2.2292 -0.4226 5.2224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357356870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:47 Heat of formation + Delta-G solvation = 20.934475 kcal Electronic energy + Delta-G solvation = -21312.072258 eV Core-core repulsion = 18127.654454 eV Total energy + Delta-G solvation = -3184.417804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29896 -37.93256 -36.33901 -34.86773 -32.59504 -32.00244 -31.09424 -28.71106 -28.19493 -27.51475 -26.06345 -24.04488 -21.64678 -21.31036 -20.02873 -19.36388 -18.69567 -17.06855 -16.60116 -15.53981 -15.24675 -14.86708 -14.55972 -14.45245 -14.00765 -13.52348 -13.36633 -13.16076 -13.08021 -12.64136 -12.44884 -12.42822 -12.22549 -11.91076 -11.71589 -11.48050 -11.33448 -11.20216 -10.98609 -10.86890 -10.72883 -10.41310 -10.26012 -10.14326 -9.89205 -8.94999 -8.79121 -8.06394 -7.55416 -7.44605 -6.12309 -4.58007 2.09319 2.55800 3.04590 3.19867 3.24586 3.26480 4.14843 4.27610 4.60290 4.63357 4.71302 4.78390 4.84723 5.02658 5.13484 5.23061 5.31352 5.33912 5.43536 5.48702 5.62467 5.66332 5.73882 5.82600 5.89670 5.95183 6.00710 6.06493 6.14061 6.28379 6.39096 6.53017 6.71525 6.86324 7.02489 7.23630 7.48952 8.00445 8.01995 8.18392 8.39747 9.08375 9.61812 10.66747 10.85996 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037485 B = 0.003487 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.790792 B = 8027.928252 C = 8336.976365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.158 3.842 3 C -0.163 4.163 4 N -0.381 5.381 5 C 0.052 3.948 6 C -0.235 4.235 7 C 0.096 3.904 8 N -0.294 5.294 9 C -0.049 4.049 10 C 0.163 3.837 11 H 0.078 0.922 12 N -0.762 5.762 13 C 0.555 3.445 14 O -0.579 6.579 15 C -0.546 4.546 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.123 4.123 24 C -0.034 4.034 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.166 0.834 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.380 0.620 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 14.956 -3.439 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 C -0.221 4.221 4 N -0.164 5.164 5 C -0.092 4.092 6 C -0.246 4.246 7 C -0.073 4.073 8 N -0.114 5.114 9 C -0.090 4.090 10 C 0.056 3.944 11 H 0.097 0.903 12 N -0.416 5.416 13 C 0.359 3.641 14 O -0.461 6.461 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.161 4.161 24 C -0.073 4.073 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.183 0.817 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.212 0.788 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.203 14.842 -5.484 20.608 hybrid contribution -0.088 -0.524 1.392 1.490 sum -13.291 14.318 -4.092 19.961 Atomic orbital electron populations 1.22234 0.94037 1.03217 1.02667 1.21135 0.94471 0.92551 0.86260 1.22183 1.02444 0.94219 1.03300 1.48779 1.52336 1.07190 1.08123 1.21788 1.02490 0.99126 0.85814 1.20128 1.13300 0.93236 0.97981 1.22508 0.97204 0.97048 0.90503 1.77078 1.21431 0.92936 1.19951 1.20661 1.00072 0.90335 0.97904 1.20411 0.97284 0.86943 0.89778 0.90345 1.46197 1.27108 1.24096 1.44198 1.18208 0.78736 0.84361 0.82775 1.90605 1.48734 1.70676 1.36097 1.20861 1.07861 1.06148 1.23457 0.91514 1.25702 0.95322 0.98190 0.93987 1.70018 1.08946 1.35900 1.24825 0.86454 0.78056 0.82128 0.80199 1.19334 1.20647 1.19334 1.21834 1.00104 0.94810 0.99345 1.19921 1.00821 0.97006 0.89550 0.92057 0.90790 0.91663 0.88281 0.91440 0.90244 0.91641 0.81676 0.90418 0.89498 0.78835 0.92131 0.91099 0.91922 0.91287 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.52 37.16 0.35 -0.96 16 2 C 0.16 1.54 3.93 -67.92 -0.27 1.27 16 3 C -0.16 -1.14 8.83 37.16 0.33 -0.81 16 4 N -0.38 -5.29 3.54 -54.98 -0.19 -5.49 16 5 C 0.05 0.67 10.55 -17.37 -0.18 0.48 16 6 C -0.23 -3.57 5.89 -104.98 -0.62 -4.19 16 7 C 0.10 1.74 7.10 -82.34 -0.58 1.15 16 8 N -0.29 -5.28 12.56 33.75 0.42 -4.86 16 9 C -0.05 -0.96 5.88 -27.57 -0.16 -1.12 16 10 C 0.16 3.20 2.40 -67.72 -0.16 3.04 16 11 H 0.08 1.78 7.54 -51.93 -0.39 1.39 16 12 N -0.76 -16.98 5.07 -55.01 -0.28 -17.25 16 13 C 0.56 15.81 7.71 -12.99 -0.10 15.71 16 14 O -0.58 -18.82 14.68 5.20 0.08 -18.74 16 15 C -0.55 -15.50 9.54 -35.63 -0.34 -15.84 16 16 H 0.07 1.73 7.85 -52.48 -0.41 1.31 16 17 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 18 N -0.77 -23.32 11.83 55.55 0.66 -22.66 16 19 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C -0.12 -1.82 5.33 -26.51 -0.14 -1.96 16 24 C -0.03 -0.45 6.28 -27.59 -0.17 -0.63 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 7.15 -51.93 -0.37 0.03 16 32 H 0.17 1.49 7.26 -52.49 -0.38 1.11 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 35 H 0.38 7.39 8.58 -40.82 -0.35 7.04 16 36 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 331.34 15.07 4.99 4.99 Total: -1.00 -35.99 331.34 -7.60 -43.59 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.11 Total: 6.57 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.15 Total: -1.48 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.61 Total: -50.26 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.08 Total: -18.74 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.99 -7.60 -43.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357356870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.525 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds