Wall clock time and date at job start Mon Mar 30 2020 02:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 C 1.35195 * 126.00208 * 274.71829 * 4 2 1 6 6 C 1.34577 * 107.61209 * 179.79770 * 5 4 2 7 7 C 1.40483 * 108.03902 * 0.52260 * 6 5 4 8 8 N 1.30130 * 108.22838 * 359.61108 * 7 6 5 9 9 C 1.50954 * 123.48922 * 179.44852 * 7 6 5 10 10 C 1.53370 * 108.20331 * 343.47553 * 9 7 6 11 11 H 1.08998 * 109.43683 * 290.54602 * 10 9 7 12 12 N 1.46504 * 109.38086 * 170.68268 * 10 9 7 13 13 C 1.34777 * 119.99933 * 84.74901 * 12 10 9 14 14 O 1.21688 * 119.99676 * 0.02562 * 13 12 10 15 15 C 1.46370 * 119.99883 * 180.02562 * 13 12 10 16 16 H 1.08007 * 120.00211 * 359.97438 * 15 13 12 17 17 C 1.40053 * 120.00122 * 180.02562 * 15 13 12 18 18 N 1.30676 * 119.99434 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00187 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46815 * 59.99889 * 19 17 15 21 21 H 1.48492 * 109.46965 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47216 * 299.99979 * 19 17 15 23 23 C 1.53036 * 109.74633 * 50.63147 * 10 9 7 24 24 C 1.50886 * 128.32272 * 180.42188 * 6 5 4 25 25 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 27 27 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 29 29 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 31 31 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 32 32 H 1.07991 * 126.19565 * 359.93686 * 5 4 2 33 33 H 1.08996 * 109.71348 * 103.16131 * 9 7 6 34 34 H 1.09002 * 109.71453 * 223.80645 * 9 7 6 35 35 H 0.96997 * 119.99799 * 264.75762 * 12 10 9 36 36 H 0.97001 * 119.99518 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.43362 * 168.17735 * 23 10 9 38 38 H 1.09004 * 109.42839 * 48.31856 * 23 10 9 39 39 H 1.09004 * 109.71593 * 283.32459 * 24 6 5 40 40 H 1.08995 * 109.72024 * 43.97811 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1984 -0.1361 2.4161 6 6 2.6528 -1.0997 3.2383 7 6 2.7676 -2.2867 2.4958 8 7 2.3870 -2.0420 1.2757 9 6 3.2605 -3.5892 3.0783 10 6 3.9705 -3.2834 4.4029 11 1 4.9023 -2.7549 4.2015 12 7 4.2631 -4.5389 5.0989 13 6 5.3815 -5.2296 4.8012 14 8 6.1484 -4.8100 3.9546 15 6 5.6735 -6.4843 5.4961 16 1 4.9930 -6.8564 6.2477 17 6 6.8359 -7.2018 5.1871 18 7 7.6595 -6.7512 4.2781 19 14 7.2090 -8.8026 6.0745 20 1 6.1122 -9.7728 5.8272 21 1 8.4879 -9.3626 5.5685 22 1 7.3231 -8.5455 7.5326 23 6 3.0711 -2.4117 5.2824 24 6 2.9990 -0.9933 4.7031 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 2.0095 0.8932 2.6829 33 1 2.4160 -4.2543 3.2585 34 1 3.9593 -4.0601 2.3868 35 1 3.6518 -4.8731 5.7738 36 1 8.4644 -7.2483 4.0638 37 1 3.4806 -2.3708 6.2917 38 1 2.0698 -2.8413 5.3151 39 1 3.9640 -0.4996 4.8179 40 1 2.2292 -0.4226 5.2224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357356870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:46 Heat of formation + Delta-G solvation = -4.943909 kcal Electronic energy + Delta-G solvation = -21313.194429 eV Core-core repulsion = 18127.654454 eV Total energy + Delta-G solvation = -3185.539975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.46400 -39.73910 -37.78374 -36.13397 -34.62129 -33.68408 -32.51888 -30.01300 -29.50022 -28.19270 -28.05907 -25.30639 -22.96140 -22.57441 -21.55536 -20.81777 -20.08506 -18.99227 -17.64719 -17.37817 -16.81462 -16.16845 -15.93949 -15.60311 -15.47478 -14.91991 -14.67188 -14.51616 -14.27747 -13.95862 -13.83328 -13.68925 -13.22135 -13.08971 -12.98970 -12.84653 -12.67580 -12.60501 -12.38897 -12.29896 -12.11713 -12.04218 -11.90677 -11.66989 -11.20755 -10.89796 -10.19070 -9.82204 -9.46675 -9.16984 -8.25975 -6.82850 0.97765 1.41000 1.45094 1.56239 1.57582 1.79183 2.26585 2.50391 3.06668 3.44467 3.65372 3.82116 3.86233 3.95019 4.01792 4.09465 4.20122 4.26116 4.41604 4.51243 4.57930 4.64703 4.72005 4.79693 4.81987 4.88368 4.95106 5.01426 5.10232 5.13879 5.21464 5.25334 5.33943 5.36379 5.42268 5.71821 5.92457 6.26740 6.29190 6.33428 6.80458 6.89394 7.61929 8.54101 8.71450 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037485 B = 0.003487 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.790792 B = 8027.928252 C = 8336.976365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 C -0.155 4.155 4 N -0.374 5.374 5 C 0.071 3.929 6 C -0.255 4.255 7 C 0.067 3.933 8 N -0.339 5.339 9 C -0.039 4.039 10 C 0.166 3.834 11 H 0.038 0.962 12 N -0.749 5.749 13 C 0.539 3.461 14 O -0.632 6.632 15 C -0.574 4.574 16 H 0.090 0.910 17 C 0.026 3.974 18 N -0.824 5.824 19 Si 0.999 3.001 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.252 1.252 23 C -0.111 4.111 24 C -0.027 4.027 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.215 0.785 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.397 0.603 36 H 0.273 0.727 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 16.637 -1.855 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 C -0.213 4.213 4 N -0.158 5.158 5 C -0.074 4.074 6 C -0.266 4.266 7 C -0.100 4.100 8 N -0.160 5.160 9 C -0.080 4.080 10 C 0.059 3.941 11 H 0.057 0.943 12 N -0.402 5.402 13 C 0.343 3.657 14 O -0.519 6.519 15 C -0.611 4.611 16 H 0.108 0.892 17 C -0.188 4.188 18 N -0.454 5.454 19 Si 0.818 3.182 20 H -0.179 1.179 21 H -0.201 1.201 22 H -0.176 1.176 23 C -0.149 4.149 24 C -0.066 4.066 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.231 0.769 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.231 0.769 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.440 16.542 -3.881 22.958 hybrid contribution 0.518 -0.941 0.762 1.317 sum -14.922 15.600 -3.119 21.812 Atomic orbital electron populations 1.22185 0.92277 1.02251 1.04593 1.21596 0.95852 0.93783 0.84422 1.22179 1.01529 0.92098 1.05535 1.49185 1.50951 1.05829 1.09810 1.22458 0.99904 1.00508 0.84540 1.20411 1.14460 0.92481 0.99282 1.22285 0.98907 0.97233 0.91549 1.76957 1.22803 0.95969 1.20304 1.20355 0.98903 0.91770 0.96942 1.20491 0.96689 0.86034 0.90839 0.94343 1.45860 1.25710 1.24510 1.44111 1.18614 0.79669 0.85106 0.82302 1.90561 1.50991 1.72070 1.38303 1.21436 1.08964 1.06506 1.24153 0.89234 1.27013 0.94587 1.02746 0.94484 1.70209 1.09830 1.38319 1.27022 0.85057 0.78123 0.75958 0.79037 1.17908 1.20129 1.17571 1.21764 0.99434 0.95064 0.98637 1.19961 1.02148 0.95899 0.88555 0.91053 0.87892 0.94053 0.89493 0.92831 0.87566 0.89864 0.76889 0.89962 0.94691 0.76895 0.91717 0.89853 0.90293 0.91364 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.52 71.98 0.69 -1.42 16 2 C 0.14 2.56 3.93 44.99 0.18 2.74 16 3 C -0.16 -1.66 8.83 71.98 0.64 -1.02 16 4 N -0.37 -10.01 3.54 -327.87 -1.16 -11.17 16 5 C 0.07 1.63 10.55 83.34 0.88 2.51 16 6 C -0.26 -7.43 5.89 -20.10 -0.12 -7.54 16 7 C 0.07 2.53 7.10 43.44 0.31 2.84 16 8 N -0.34 -12.63 12.56 -47.13 -0.59 -13.23 16 9 C -0.04 -1.64 5.88 30.05 0.18 -1.46 16 10 C 0.17 6.83 2.40 45.13 0.11 6.94 16 11 H 0.04 1.88 7.54 -2.39 -0.02 1.87 16 12 N -0.75 -34.59 5.07 -446.17 -2.26 -36.86 16 13 C 0.54 32.21 7.71 86.36 0.67 32.88 16 14 O -0.63 -44.02 14.68 -4.31 -0.06 -44.09 16 15 C -0.57 -33.25 9.54 24.83 0.24 -33.02 16 16 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 17 C 0.03 1.51 5.50 85.31 0.47 1.98 16 18 N -0.82 -52.12 11.83 21.84 0.26 -51.86 16 19 Si 1.00 41.93 29.56 68.60 2.03 43.95 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 23 C -0.11 -3.16 5.33 30.74 0.16 -3.00 16 24 C -0.03 -0.65 6.28 30.04 0.19 -0.46 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.62 7.15 -2.39 -0.02 0.60 16 32 H 0.21 2.70 7.26 -2.92 -0.02 2.68 16 33 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.03 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.40 15.50 8.58 -92.71 -0.80 14.71 16 36 H 0.27 15.70 8.29 -92.71 -0.77 14.93 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 39 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -86.08 331.34 3.03 -83.05 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.24 Total: 28.24 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 4.58 Total: 1.95 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -3.76 Total: -113.11 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.06 Total: -44.09 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -86.08 3.03 -83.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357356870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.104 kcal (2) G-P(sol) polarization free energy of solvation -86.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds