Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46908 * 2 1 4 4 H 1.09007 * 109.47448 * 305.00233 * 3 2 1 5 5 C 1.50700 * 109.47109 * 185.00162 * 3 2 1 6 6 H 1.08007 * 120.00038 * 239.99876 * 5 3 2 7 7 C 1.37880 * 120.00055 * 60.00057 * 5 3 2 8 8 N 1.31511 * 119.99805 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99773 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47437 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46821 * 120.00285 * 9 7 5 12 12 H 1.48503 * 109.47086 * 239.99915 * 9 7 5 13 13 N 1.46498 * 109.47338 * 65.00069 * 3 2 1 14 14 C 1.34775 * 119.99993 * 274.72645 * 13 3 2 15 15 O 1.21599 * 120.00189 * 359.97438 * 14 13 3 16 16 C 1.47428 * 120.00014 * 179.97438 * 14 13 3 17 17 C 1.39975 * 120.61002 * 354.44878 * 16 14 13 18 18 C 1.38331 * 118.37098 * 179.75480 * 17 16 14 19 19 C 1.38377 * 119.50578 * 0.51780 * 18 17 16 20 20 N 1.31853 * 121.21887 * 359.72509 * 19 18 17 21 21 C 1.32432 * 121.77186 * 0.02562 * 20 19 18 22 22 N 1.38262 * 119.82258 * 180.02562 * 21 20 19 23 23 C 1.46900 * 110.99817 * 304.56782 * 22 21 20 24 24 C 1.46898 * 111.00378 * 68.52467 * 22 21 20 25 25 H 1.09000 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47087 * 299.99734 * 1 2 3 27 27 H 1.08990 * 109.47258 * 60.00001 * 1 2 3 28 28 H 1.08997 * 109.47087 * 240.00265 * 2 1 3 29 29 H 1.08997 * 109.47618 * 120.00006 * 2 1 3 30 30 H 0.97006 * 120.00006 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00173 * 94.99855 * 13 3 2 32 32 H 1.08001 * 120.81566 * 359.97438 * 17 16 14 33 33 H 1.07996 * 120.25112 * 180.26097 * 18 17 16 34 34 H 1.08001 * 119.39063 * 179.74123 * 19 18 17 35 35 H 1.09001 * 109.47253 * 60.00754 * 23 22 21 36 36 H 1.09003 * 109.47285 * 180.02562 * 23 22 21 37 37 H 1.09001 * 109.47134 * 299.99965 * 23 22 21 38 38 H 1.08994 * 109.46946 * 64.82124 * 24 22 21 39 39 H 1.08995 * 109.47366 * 184.82251 * 24 22 21 40 40 H 1.09005 * 109.47097 * 304.82039 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8815 -1.3819 10 1 6.5987 1.5464 -0.1943 11 1 6.4971 -0.5173 -1.4631 12 1 6.3989 1.6170 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4372 2.6692 1.3651 15 8 -0.3374 2.6418 0.4281 16 6 0.0470 3.3279 2.6250 17 6 0.8797 3.2676 3.7484 18 6 0.4705 3.9065 4.9051 19 6 -0.7429 4.5715 4.9235 20 7 -1.5159 4.6127 3.8561 21 6 -1.1705 4.0227 2.7218 22 7 -2.0119 4.0919 1.6269 23 6 -3.3526 3.5929 1.9608 24 6 -2.0763 5.4609 1.0980 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0611 -2.9499 31 1 2.2719 2.1232 1.9978 32 1 1.8205 2.7383 3.7120 33 1 1.0913 3.8830 5.7884 34 1 -1.0626 5.0661 5.8288 35 1 -3.7750 4.1959 2.7646 36 1 -3.9939 3.6581 1.0818 37 1 -3.2836 2.5540 2.2835 38 1 -1.0973 5.7488 0.7150 39 1 -2.8091 5.5051 0.2923 40 1 -2.3703 6.1446 1.8944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358056709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = 20.623957 kcal Electronic energy + Delta-G solvation = -22117.337918 eV Core-core repulsion = 18932.906650 eV Total energy + Delta-G solvation = -3184.431269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66122 -38.41945 -36.79258 -34.88923 -32.88549 -32.00744 -30.85277 -30.21767 -27.46649 -26.98873 -24.93944 -24.34890 -22.91015 -21.47305 -20.48556 -19.26371 -17.78627 -16.92030 -16.67700 -15.79752 -15.31920 -15.09342 -14.73926 -14.34894 -14.21166 -13.94785 -13.58738 -13.27041 -12.85693 -12.62853 -12.49862 -12.14549 -11.93724 -11.78633 -11.56963 -11.44401 -11.22724 -10.93852 -10.81385 -10.27625 -10.14284 -9.84382 -9.81749 -9.57276 -9.04940 -8.98483 -8.85823 -8.47107 -8.16767 -7.71031 -6.10152 -4.19235 0.81580 1.15210 3.24384 3.32382 3.34587 3.38313 3.74896 4.06883 4.19754 4.36921 4.53048 4.78958 4.95698 5.13732 5.20863 5.24222 5.40554 5.47592 5.62025 5.65849 5.78641 5.96425 5.99396 6.00883 6.09865 6.39172 6.45157 6.52881 6.72767 6.98553 7.10450 7.26136 7.41214 7.43219 7.52631 7.66053 7.76746 7.86615 7.95583 8.22220 8.73363 8.83332 9.24224 9.48843 10.95140 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023083 B = 0.005014 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.719465 B = 5583.510217 C = 6146.267562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.541 3.459 15 O -0.500 6.500 16 C -0.144 4.144 17 C -0.046 4.046 18 C -0.185 4.185 19 C 0.120 3.880 20 N -0.521 5.521 21 C 0.339 3.661 22 N -0.469 5.469 23 C 0.036 3.964 24 C 0.037 3.963 25 H 0.020 0.980 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.383 0.617 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 6.682 12.657 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.325 3.675 15 O -0.376 6.376 16 C -0.151 4.151 17 C -0.073 4.073 18 C -0.205 4.205 19 C -0.039 4.039 20 N -0.233 5.233 21 C 0.110 3.890 22 N -0.191 5.191 23 C -0.112 4.112 24 C -0.110 4.110 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.215 0.785 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.455 6.691 11.382 15.678 hybrid contribution 1.854 -0.014 0.962 2.089 sum -6.601 6.677 12.344 15.509 Atomic orbital electron populations 1.21823 0.98239 0.97910 1.01366 1.21929 0.92695 0.99806 1.02124 1.18763 0.94057 0.89113 0.80935 0.93179 1.21272 0.90800 1.38828 1.06219 0.92169 1.24876 0.98478 0.94863 0.95424 1.69907 1.34961 1.37689 1.09330 0.86430 0.85046 0.77735 0.78088 1.19803 1.20912 1.20909 1.46464 1.14590 1.56312 1.18498 1.17693 0.83177 0.80031 0.86637 1.90814 1.50608 1.57696 1.38468 1.21234 0.95705 1.01589 0.96566 1.21889 0.98696 0.95058 0.91664 1.22041 0.98530 1.00631 0.99284 1.22643 0.90426 0.94974 0.95867 1.67815 1.35214 1.19734 1.00543 1.19825 0.90774 0.90382 0.88042 1.59839 1.10628 1.23048 1.25536 1.22321 0.88117 1.00198 1.00515 1.22333 1.03017 0.86457 0.99156 0.96055 0.94236 0.93044 0.88364 0.95200 0.92654 0.78456 0.83966 0.84363 0.82821 0.94509 0.90794 0.91715 0.91349 0.90642 0.94874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.45 7.57 -51.92 -0.39 1.06 16 5 C -0.53 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.71 -14.70 4.97 -56.01 -0.28 -14.98 16 14 C 0.54 11.03 6.32 -12.52 -0.08 10.96 16 15 O -0.50 -11.65 12.25 5.28 0.06 -11.59 16 16 C -0.14 -2.42 5.91 -104.65 -0.62 -3.04 16 17 C -0.05 -0.61 9.63 -38.90 -0.37 -0.98 16 18 C -0.18 -1.95 10.09 -39.50 -0.40 -2.35 16 19 C 0.12 1.35 11.16 -17.49 -0.20 1.16 16 20 N -0.52 -7.47 9.42 -12.20 -0.11 -7.58 16 21 C 0.34 5.54 5.35 -155.19 -0.83 4.70 16 22 N -0.47 -7.71 2.96 -188.75 -0.56 -8.27 16 23 C 0.04 0.50 9.39 60.06 0.56 1.06 16 24 C 0.04 0.53 9.56 60.06 0.57 1.10 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.88 5.67 -51.93 -0.29 0.58 16 27 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.38 6.88 6.67 -40.82 -0.27 6.60 16 32 H 0.14 1.60 6.55 -52.49 -0.34 1.26 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.04 0.48 7.75 -51.93 -0.40 0.07 16 36 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 40 H 0.03 0.44 7.90 -51.93 -0.41 0.03 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -30.91 326.14 -7.85 -38.76 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.75 Total: 6.48 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.74 Total: 0.76 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.33 Total: -54.78 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.06 Total: -11.59 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.91 -7.85 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358056709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.388 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds