Wall clock time and date at job start Mon Mar 30 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46908 * 2 1 4 4 H 1.09007 * 109.47448 * 305.00233 * 3 2 1 5 5 C 1.50700 * 109.47109 * 185.00162 * 3 2 1 6 6 H 1.08007 * 120.00038 * 239.99876 * 5 3 2 7 7 C 1.37880 * 120.00055 * 60.00057 * 5 3 2 8 8 N 1.31511 * 119.99805 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99773 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47437 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46821 * 120.00285 * 9 7 5 12 12 H 1.48503 * 109.47086 * 239.99915 * 9 7 5 13 13 N 1.46498 * 109.47338 * 65.00069 * 3 2 1 14 14 C 1.34775 * 119.99993 * 274.72645 * 13 3 2 15 15 O 1.21599 * 120.00189 * 359.97438 * 14 13 3 16 16 C 1.47428 * 120.00014 * 179.97438 * 14 13 3 17 17 C 1.39975 * 120.61002 * 354.44878 * 16 14 13 18 18 C 1.38331 * 118.37098 * 179.75480 * 17 16 14 19 19 C 1.38377 * 119.50578 * 0.51780 * 18 17 16 20 20 N 1.31853 * 121.21887 * 359.72509 * 19 18 17 21 21 C 1.32432 * 121.77186 * 0.02562 * 20 19 18 22 22 N 1.38262 * 119.82258 * 180.02562 * 21 20 19 23 23 C 1.46900 * 110.99817 * 304.56782 * 22 21 20 24 24 C 1.46898 * 111.00378 * 68.52467 * 22 21 20 25 25 H 1.09000 * 109.46729 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47087 * 299.99734 * 1 2 3 27 27 H 1.08990 * 109.47258 * 60.00001 * 1 2 3 28 28 H 1.08997 * 109.47087 * 240.00265 * 2 1 3 29 29 H 1.08997 * 109.47618 * 120.00006 * 2 1 3 30 30 H 0.97006 * 120.00006 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00173 * 94.99855 * 13 3 2 32 32 H 1.08001 * 120.81566 * 359.97438 * 17 16 14 33 33 H 1.07996 * 120.25112 * 180.26097 * 18 17 16 34 34 H 1.08001 * 119.39063 * 179.74123 * 19 18 17 35 35 H 1.09001 * 109.47253 * 60.00754 * 23 22 21 36 36 H 1.09003 * 109.47285 * 180.02562 * 23 22 21 37 37 H 1.09001 * 109.47134 * 299.99965 * 23 22 21 38 38 H 1.08994 * 109.46946 * 64.82124 * 24 22 21 39 39 H 1.08995 * 109.47366 * 184.82251 * 24 22 21 40 40 H 1.09005 * 109.47097 * 304.82039 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8815 -1.3819 10 1 6.5987 1.5464 -0.1943 11 1 6.4971 -0.5173 -1.4631 12 1 6.3989 1.6170 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4372 2.6692 1.3651 15 8 -0.3374 2.6418 0.4281 16 6 0.0470 3.3279 2.6250 17 6 0.8797 3.2676 3.7484 18 6 0.4705 3.9065 4.9051 19 6 -0.7429 4.5715 4.9235 20 7 -1.5159 4.6127 3.8561 21 6 -1.1705 4.0227 2.7218 22 7 -2.0119 4.0919 1.6269 23 6 -3.3526 3.5929 1.9608 24 6 -2.0763 5.4609 1.0980 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8292 -0.0611 -2.9499 31 1 2.2719 2.1232 1.9978 32 1 1.8205 2.7383 3.7120 33 1 1.0913 3.8830 5.7884 34 1 -1.0626 5.0661 5.8288 35 1 -3.7750 4.1959 2.7646 36 1 -3.9939 3.6581 1.0818 37 1 -3.2836 2.5540 2.2835 38 1 -1.0973 5.7488 0.7150 39 1 -2.8091 5.5051 0.2923 40 1 -2.3703 6.1446 1.8944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358056709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:52 Heat of formation + Delta-G solvation = 0.677885 kcal Electronic energy + Delta-G solvation = -22118.202845 eV Core-core repulsion = 18932.906650 eV Total energy + Delta-G solvation = -3185.296195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.80327 -39.99554 -37.87851 -36.74743 -34.40898 -33.66013 -32.40768 -31.43581 -28.91289 -28.57379 -26.12661 -25.56916 -24.72736 -22.64987 -22.06076 -21.06074 -19.32129 -18.16126 -17.84088 -17.45930 -16.93756 -16.48465 -16.07708 -15.80395 -15.71653 -15.17456 -14.94465 -14.56028 -14.38653 -14.09896 -13.65573 -13.53232 -13.39632 -13.16357 -13.14773 -12.90931 -12.83295 -12.71135 -12.67578 -12.11673 -12.02369 -11.55689 -11.02305 -10.88996 -10.85652 -10.59562 -10.47032 -9.95751 -9.49612 -9.33544 -8.13094 -6.30122 -0.27193 0.15952 1.45451 1.46708 1.58214 2.14991 2.37562 2.62805 2.71973 2.89314 3.16640 3.52554 3.89344 3.92263 4.07064 4.18336 4.36807 4.42134 4.52302 4.54698 4.56590 4.60894 4.66047 4.81238 4.86145 4.89799 5.00871 5.10453 5.12777 5.30610 5.48197 5.48740 5.60146 5.68155 5.84308 5.89844 5.98715 6.21195 6.32167 6.78333 6.82617 7.10161 7.37524 7.69730 8.92475 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023083 B = 0.005014 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.719465 B = 5583.510217 C = 6146.267562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.283 3.717 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.706 5.706 14 C 0.540 3.460 15 O -0.540 6.540 16 C -0.178 4.178 17 C -0.045 4.045 18 C -0.167 4.167 19 C 0.126 3.874 20 N -0.534 5.534 21 C 0.326 3.674 22 N -0.500 5.500 23 C 0.042 3.958 24 C 0.043 3.957 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.398 0.602 32 H 0.158 0.842 33 H 0.184 0.816 34 H 0.196 0.804 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 7.355 15.844 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.357 5.357 14 C 0.326 3.674 15 O -0.417 6.417 16 C -0.185 4.185 17 C -0.071 4.071 18 C -0.186 4.186 19 C -0.033 4.033 20 N -0.246 5.246 21 C 0.097 3.903 22 N -0.222 5.222 23 C -0.105 4.105 24 C -0.103 4.103 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.233 0.767 32 H 0.176 0.824 33 H 0.202 0.798 34 H 0.213 0.787 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.546 7.377 14.609 18.022 hybrid contribution 1.525 -0.160 0.077 1.536 sum -6.021 7.218 14.687 17.437 Atomic orbital electron populations 1.21632 0.97033 0.98839 1.00184 1.21772 0.93644 0.99235 1.01149 1.18321 0.93530 0.89005 0.81216 0.98427 1.21605 0.91422 1.38698 1.06632 0.91097 1.25753 1.03182 0.94436 0.95049 1.70062 1.36939 1.38473 1.09883 0.85344 0.79295 0.77781 0.78173 1.18379 1.20487 1.21169 1.46187 1.15427 1.56504 1.17587 1.18244 0.82257 0.79168 0.87694 1.90783 1.51572 1.59040 1.40343 1.20955 0.97546 1.03997 0.96004 1.22152 0.98640 0.95019 0.91332 1.22495 0.98371 0.98232 0.99511 1.23472 0.90093 0.93649 0.96051 1.67881 1.36077 1.20004 1.00686 1.19844 0.90673 0.90984 0.88777 1.59772 1.11695 1.24039 1.26714 1.22275 0.87474 0.99472 1.01249 1.22271 1.02274 0.86030 0.99727 0.93885 0.94091 0.95498 0.91044 0.94180 0.92674 0.76719 0.82410 0.79846 0.78682 0.93566 0.89800 0.92923 0.93250 0.89468 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.52 71.98 0.61 -4.93 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.61 2.24 44.25 0.10 14.71 16 4 H 0.00 -0.13 7.57 -2.38 -0.02 -0.15 16 5 C -0.55 -28.78 8.73 25.60 0.22 -28.56 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.85 5.29 84.66 0.45 1.29 16 8 N -0.92 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 10 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 13 N -0.71 -29.75 4.97 -449.38 -2.23 -31.98 16 14 C 0.54 22.64 6.32 86.66 0.55 23.19 16 15 O -0.54 -26.44 12.25 -4.03 -0.05 -26.49 16 16 C -0.18 -5.90 5.91 -19.88 -0.12 -6.01 16 17 C -0.04 -1.06 9.63 22.71 0.22 -0.84 16 18 C -0.17 -2.74 10.09 22.33 0.23 -2.52 16 19 C 0.13 2.32 11.16 84.72 0.95 3.26 16 20 N -0.53 -14.14 9.42 -192.51 -1.81 -15.96 16 21 C 0.33 10.47 5.35 133.65 0.72 11.19 16 22 N -0.50 -16.72 2.96 -751.07 -2.22 -18.94 16 23 C 0.04 1.17 9.39 127.69 1.20 2.37 16 24 C 0.04 1.26 9.56 127.69 1.22 2.48 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.86 5.67 -2.39 -0.01 1.85 16 27 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 28 H 0.07 3.98 5.95 -2.39 -0.01 3.97 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 31 H 0.40 14.05 6.67 -92.71 -0.62 13.44 16 32 H 0.16 3.10 6.55 -2.91 -0.02 3.08 16 33 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.20 1.91 8.06 -2.91 -0.02 1.88 16 35 H 0.05 1.17 7.75 -2.39 -0.02 1.15 16 36 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 2.21 8.04 -2.39 -0.02 2.19 16 40 H 0.04 1.12 7.90 -2.38 -0.02 1.10 16 Total: -1.00 -70.43 326.14 2.88 -67.55 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.43 Total: 24.27 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 6.51 Total: 9.85 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -6.03 Total: -119.14 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -70.43 2.88 -67.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358056709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.224 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds