Wall clock time and date at job start Mon Mar 30 2020 02:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21573 * 119.99794 * 0.02562 * 14 13 3 16 16 C 1.47707 * 120.00452 * 180.02562 * 14 13 3 17 17 C 1.41507 * 126.51683 * 179.71201 * 16 14 13 18 18 C 1.35364 * 105.50122 * 179.89773 * 17 16 14 19 19 C 1.50697 * 126.38971 * 180.08378 * 18 17 16 20 20 C 1.53013 * 117.49419 * 34.07087 * 19 18 17 21 21 C 1.53005 * 117.49477 * 325.41840 * 19 18 17 22 22 N 1.35038 * 107.22864 * 0.36200 * 18 17 16 23 23 C 1.46503 * 124.88433 * 179.76638 * 22 18 17 24 24 N 1.28473 * 110.23016 * 359.75572 * 22 18 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 32 32 H 1.07999 * 127.25097 * 0.02562 * 17 16 14 33 33 H 1.08996 * 115.55729 * 179.73769 * 19 18 17 34 34 H 1.08997 * 117.49651 * 0.02562 * 20 19 18 35 35 H 1.08996 * 117.49520 * 145.01938 * 20 19 18 36 36 H 1.09002 * 117.49345 * 214.97234 * 21 19 18 37 37 H 1.08997 * 117.50030 * 359.96565 * 21 19 18 38 38 H 1.09007 * 109.46906 * 269.96784 * 23 22 18 39 39 H 1.08994 * 109.47210 * 29.96472 * 23 22 18 40 40 H 1.09000 * 109.47458 * 149.97260 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3415 2.6319 0.4321 16 6 0.0445 3.3253 2.6288 17 6 -1.1885 3.9656 2.8974 18 6 -1.0923 4.4165 4.1701 19 6 -2.1502 5.1703 4.9340 20 6 -3.6119 4.8154 4.6533 21 6 -3.0345 6.1394 4.1465 22 7 0.1309 4.0703 4.6257 23 6 0.6436 4.3744 5.9640 24 7 0.7803 3.4357 3.7168 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0604 -2.9502 31 1 2.2719 2.1232 1.9977 32 1 -2.0300 4.0705 2.2287 33 1 -1.8864 5.4460 5.9550 34 1 -3.8081 4.0365 3.9166 35 1 -4.3096 4.8580 5.4897 36 1 -3.3526 7.0524 4.6497 37 1 -2.8506 6.2320 3.0762 38 1 1.1523 5.3383 5.9478 39 1 -0.1855 4.4130 6.6705 40 1 1.3454 3.5983 6.2693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358065138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:32 Heat of formation + Delta-G solvation = 40.012518 kcal Electronic energy + Delta-G solvation = -21418.638336 eV Core-core repulsion = 18235.047819 eV Total energy + Delta-G solvation = -3183.590518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.70241 -40.46528 -38.09707 -36.95568 -34.58231 -34.19135 -32.76065 -31.34999 -29.26950 -28.06966 -25.34259 -24.44734 -23.80224 -23.20937 -21.82057 -21.33433 -20.51676 -18.96405 -18.12243 -17.34353 -17.22073 -17.08147 -16.16331 -16.03065 -15.87300 -15.29062 -14.91446 -14.68556 -14.58748 -14.01109 -13.61318 -13.40405 -13.39384 -13.19218 -12.94791 -12.78704 -12.67182 -12.37731 -12.18905 -12.09232 -11.98184 -11.96106 -11.61771 -11.30964 -11.07622 -10.97022 -10.54353 -10.08983 -9.74199 -9.62492 -8.16686 -6.34226 0.58110 1.03396 1.43883 1.45035 1.55529 1.58506 2.34948 2.49490 2.60357 3.05875 3.12192 3.34079 3.51344 3.91358 4.04624 4.11033 4.18984 4.38651 4.45186 4.47720 4.55424 4.57641 4.65816 4.74856 4.75685 4.84527 5.04576 5.05203 5.20836 5.24239 5.30243 5.32927 5.42242 5.52730 5.59282 5.77155 5.85110 5.92279 6.14272 6.71421 6.77183 7.04550 7.30288 7.48768 8.89070 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.004043 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.156821 B = 6924.520102 C = 7529.830347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.277 3.723 4 H 0.003 0.997 5 C -0.552 4.552 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.973 3.027 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.692 5.692 14 C 0.585 3.415 15 O -0.577 6.577 16 C -0.036 4.036 17 C -0.204 4.204 18 C 0.058 3.942 19 C -0.102 4.102 20 C -0.159 4.159 21 C -0.160 4.160 22 N -0.275 5.275 23 C 0.072 3.928 24 N -0.276 5.276 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.402 0.598 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 10.248 20.456 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.021 0.979 5 C -0.590 4.590 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.797 3.203 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.192 1.192 13 N -0.340 5.340 14 C 0.370 3.630 15 O -0.457 6.457 16 C -0.194 4.194 17 C -0.233 4.233 18 C -0.068 4.068 19 C -0.121 4.121 20 C -0.196 4.196 21 C -0.197 4.197 22 N -0.063 5.063 23 C -0.066 4.066 24 N -0.113 5.113 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.236 0.764 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.147 0.853 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.156 9.852 20.162 24.236 hybrid contribution 0.542 -0.086 -0.818 0.985 sum -8.614 9.765 19.344 23.318 Atomic orbital electron populations 1.21681 0.96943 0.99315 1.00191 1.21785 0.93821 0.98897 1.01372 1.18485 0.93929 0.89341 0.80845 0.97923 1.21536 0.91244 1.39339 1.06881 0.91540 1.25767 1.03524 0.94179 0.94790 1.70042 1.37101 1.38137 1.09792 0.85336 0.78820 0.78828 0.77290 1.19504 1.20835 1.19197 1.46184 1.14879 1.55118 1.17792 1.17333 0.82151 0.78028 0.85451 1.90711 1.52707 1.61825 1.40420 1.21860 0.95826 1.07714 0.94027 1.21485 0.98871 1.05829 0.97077 1.20863 0.88840 1.03034 0.94019 1.20515 0.88536 1.03118 0.99947 1.23183 0.93371 0.98841 1.04214 1.23179 1.01388 0.94912 1.00241 1.45752 1.09985 1.37674 1.12923 1.22650 1.03211 1.04532 0.76190 1.73516 1.24119 1.15213 0.98465 0.93206 0.95111 0.94408 0.94334 0.90418 0.92428 0.76372 0.82919 0.83246 0.89726 0.85386 0.85440 0.89803 0.87961 0.85336 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.51 71.98 0.61 -5.39 16 2 C -0.12 -6.31 5.45 30.60 0.17 -6.14 16 3 C 0.28 15.35 2.24 44.25 0.10 15.45 16 4 H 0.00 0.19 7.58 -2.39 -0.02 0.17 16 5 C -0.55 -31.08 8.73 25.60 0.22 -30.86 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.99 5.29 84.66 0.45 1.43 16 8 N -0.91 -53.55 11.29 21.45 0.24 -53.30 16 9 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.69 -33.41 5.02 -449.11 -2.25 -35.67 16 14 C 0.59 27.70 6.39 86.75 0.55 28.25 16 15 O -0.58 -30.67 14.06 -3.95 -0.06 -30.72 16 16 C -0.04 -1.40 7.13 42.46 0.30 -1.10 16 17 C -0.20 -6.66 9.86 22.41 0.22 -6.44 16 18 C 0.06 1.38 6.60 41.40 0.27 1.66 16 19 C -0.10 -1.42 5.94 -11.53 -0.07 -1.48 16 20 C -0.16 -2.00 10.05 30.62 0.31 -1.69 16 21 C -0.16 -2.04 10.06 30.62 0.31 -1.74 16 22 N -0.28 -6.69 3.70 -355.92 -1.32 -8.01 16 23 C 0.07 0.83 11.05 127.77 1.41 2.24 16 24 N -0.28 -9.33 11.67 -48.18 -0.56 -9.89 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 27 H 0.04 1.81 5.64 -2.38 -0.01 1.80 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 4.46 5.95 -2.39 -0.01 4.44 16 30 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.40 17.85 8.26 -92.71 -0.77 17.09 16 32 H 0.15 4.90 8.06 -2.91 -0.02 4.88 16 33 H 0.15 1.03 7.17 -2.39 -0.02 1.01 16 34 H 0.08 1.41 7.95 -2.39 -0.02 1.39 16 35 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.42 7.96 -2.39 -0.02 1.40 16 38 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.13 0.55 7.12 -2.39 -0.02 0.53 16 40 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.04 332.33 3.23 -71.81 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.28 Total: 26.02 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.86 Total: -5.81 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -3.89 Total: -106.87 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.06 Total: -30.72 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -75.04 3.23 -71.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358065138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.826 kcal (2) G-P(sol) polarization free energy of solvation -75.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds