Wall clock time and date at job start Mon Mar 30 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47365 * 2 1 4 4 N 1.46499 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.36825 * 120.00088 * 263.46827 * 4 3 2 6 6 H 1.08003 * 120.00424 * 1.22500 * 5 4 3 7 7 C 1.39072 * 120.00310 * 181.21369 * 5 4 3 8 8 N 1.31354 * 119.99338 * 85.31156 * 7 5 4 9 9 Si 1.86795 * 120.00289 * 265.31666 * 7 5 4 10 10 H 1.48502 * 109.47163 * 89.99447 * 9 7 5 11 11 H 1.48504 * 109.47105 * 209.99702 * 9 7 5 12 12 H 1.48502 * 109.47195 * 329.99660 * 9 7 5 13 13 C 1.34776 * 119.99946 * 83.47472 * 4 3 2 14 14 O 1.21605 * 120.00385 * 185.36741 * 13 4 3 15 15 C 1.47700 * 119.99960 * 5.36275 * 13 4 3 16 16 C 1.39620 * 119.64214 * 172.52302 * 15 13 4 17 17 C 1.38190 * 119.14754 * 180.02562 * 16 15 13 18 18 C 1.39471 * 118.44621 * 0.02562 * 17 16 15 19 19 N 1.39083 * 120.40040 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99643 * 359.97438 * 19 18 17 21 21 C 1.46497 * 120.00235 * 180.02562 * 19 18 17 22 22 C 1.39464 * 119.20767 * 0.25441 * 18 17 16 23 23 N 1.31334 * 120.78143 * 359.46795 * 22 18 17 24 24 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46399 * 299.99355 * 1 2 3 26 26 H 1.08998 * 109.47585 * 59.99716 * 1 2 3 27 27 H 1.09007 * 109.46911 * 240.00566 * 2 1 3 28 28 H 1.08998 * 109.47585 * 120.00284 * 2 1 3 29 29 H 1.09001 * 109.46983 * 60.00186 * 3 2 1 30 30 H 1.08998 * 109.47000 * 300.00642 * 3 2 1 31 31 H 0.97006 * 119.99225 * 184.83659 * 8 7 5 32 32 H 1.07992 * 120.42479 * 0.04828 * 16 15 13 33 33 H 1.08004 * 120.77667 * 180.02562 * 17 16 15 34 34 H 1.09005 * 109.47069 * 270.00129 * 20 19 18 35 35 H 1.08998 * 109.46626 * 150.00382 * 20 19 18 36 36 H 1.08991 * 109.46917 * 30.00145 * 20 19 18 37 37 H 1.09002 * 109.47048 * 269.99595 * 21 19 18 38 38 H 1.09000 * 109.47368 * 30.00055 * 21 19 18 39 39 H 1.09001 * 109.46983 * 150.00211 * 21 19 18 40 40 H 1.07999 * 119.60797 * 179.72647 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 1.5771 1.1764 6 1 3.6503 1.6635 2.1081 7 6 5.5802 1.6024 1.1731 8 7 6.2158 2.7324 0.9622 9 14 6.5438 0.0297 1.4684 10 1 6.8004 -0.6447 0.1704 11 1 7.8372 0.3567 2.1207 12 1 5.7597 -0.8733 2.3488 13 6 4.1784 1.3100 -1.1606 14 8 5.3905 1.2118 -1.1523 15 6 3.4442 1.2839 -2.4419 16 6 4.1532 1.3045 -3.6445 17 6 3.4559 1.2803 -4.8374 18 6 2.0626 1.2366 -4.7917 19 7 1.3203 1.2116 -5.9676 20 6 2.0016 1.2317 -7.2644 21 6 -0.1428 1.1663 -5.9094 22 6 1.4224 1.2242 -3.5528 23 7 2.1159 1.2427 -2.4376 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 7.1832 2.7384 0.8900 32 1 5.2326 1.3384 -3.6426 33 1 3.9777 1.2949 -5.7829 34 1 2.1380 2.2639 -7.5873 35 1 1.3994 0.6976 -7.9994 36 1 2.9742 0.7486 -7.1714 37 1 -0.4738 0.1279 -5.8934 38 1 -0.4864 1.6712 -5.0066 39 1 -0.5569 1.6660 -6.7852 40 1 0.3436 1.1949 -3.5099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358639643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:13 Heat of formation + Delta-G solvation = 56.745005 kcal Electronic energy + Delta-G solvation = -22221.818648 eV Core-core repulsion = 19038.953705 eV Total energy + Delta-G solvation = -3182.864942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.95777 -38.07490 -36.24781 -34.77615 -32.93219 -31.72232 -31.37904 -29.91953 -28.36316 -26.08806 -25.39711 -23.91302 -22.62685 -21.61816 -20.73297 -19.61705 -17.56413 -16.88673 -16.03325 -15.74458 -15.14801 -14.64388 -14.58088 -14.38988 -13.88903 -13.78112 -13.38906 -13.18464 -12.90173 -12.73056 -12.68591 -12.39439 -12.07024 -11.88956 -11.82196 -11.62579 -11.25282 -11.12866 -10.69392 -10.61506 -10.35110 -10.16986 -10.00726 -9.68038 -8.97928 -8.72647 -8.43931 -8.05097 -7.43448 -7.09674 -6.76782 -3.25526 1.65081 1.86957 3.17790 3.43169 3.57930 3.66061 4.04848 4.25863 4.70507 4.87941 4.97226 5.01997 5.11560 5.12471 5.19532 5.28637 5.50270 5.51539 5.57775 5.60286 5.70828 5.76181 5.83846 5.95687 6.17460 6.29670 6.33749 6.40673 6.52758 6.62880 6.73105 6.79328 6.94983 7.05691 7.27337 7.32772 7.37424 7.62728 8.03147 8.60778 8.76813 9.32779 9.60941 10.13450 10.48721 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.005877 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.580054 B = 4763.242696 C = 5658.169835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.096 3.904 4 N -0.369 5.369 5 C -0.467 4.467 6 H 0.104 0.896 7 C 0.218 3.782 8 N -0.696 5.696 9 Si 0.836 3.164 10 H -0.262 1.262 11 H -0.296 1.296 12 H -0.273 1.273 13 C 0.409 3.591 14 O -0.597 6.597 15 C 0.074 3.926 16 C -0.091 4.091 17 C -0.158 4.158 18 C 0.135 3.865 19 N -0.636 5.636 20 C 0.096 3.904 21 C 0.097 3.903 22 C 0.024 3.976 23 N -0.434 5.434 24 H 0.043 0.957 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.279 0.721 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -1.972 -12.206 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C -0.029 4.029 4 N -0.080 5.080 5 C -0.585 4.585 6 H 0.122 0.878 7 C -0.017 4.017 8 N -0.317 5.317 9 Si 0.657 3.343 10 H -0.187 1.187 11 H -0.224 1.224 12 H -0.198 1.198 13 C 0.206 3.794 14 O -0.488 6.488 15 C -0.065 4.065 16 C -0.113 4.113 17 C -0.188 4.188 18 C 0.032 3.968 19 N -0.350 5.350 20 C -0.047 4.047 21 C -0.047 4.047 22 C -0.139 4.139 23 N -0.146 5.146 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.089 -1.783 -11.509 16.081 hybrid contribution 0.856 -0.754 -0.923 1.467 sum -10.233 -2.537 -12.432 16.300 Atomic orbital electron populations 1.21618 0.96609 1.00337 1.01097 1.21668 0.94477 0.98285 1.01463 1.22170 0.81344 0.96670 1.02683 1.43651 1.04716 1.54083 1.05529 1.18593 0.89210 1.64914 0.85778 0.87819 1.24867 0.96640 0.95003 0.85168 1.70700 1.11400 1.29987 1.19586 0.87723 0.77933 0.89820 0.78861 1.18661 1.22367 1.19759 1.16850 0.86795 0.93908 0.81833 1.90479 1.12914 1.61906 1.83517 1.21409 0.88617 1.01194 0.95242 1.21720 1.01427 0.97072 0.91107 1.20941 0.91829 1.07403 0.98582 1.18832 0.91581 0.99052 0.87322 1.45944 1.04627 1.81459 1.03017 1.21562 0.97992 1.00790 0.84369 1.21573 0.79787 1.00885 1.02417 1.22409 0.99610 1.05400 0.86519 1.68079 1.07989 1.10963 1.27569 0.93833 0.93476 0.92857 0.92090 0.92861 0.93018 0.87169 0.90884 0.84582 0.85699 0.93745 0.91946 0.91484 0.93650 0.91276 0.91924 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -2.30 5.67 -26.73 -0.15 -2.45 16 3 C 0.10 2.06 4.95 -4.04 -0.02 2.04 16 4 N -0.37 -9.75 2.63 -115.94 -0.31 -10.06 16 5 C -0.47 -13.17 9.48 -15.01 -0.14 -13.31 16 6 H 0.10 2.85 8.02 -52.48 -0.42 2.43 16 7 C 0.22 6.17 3.00 -17.45 -0.05 6.12 16 8 N -0.70 -19.82 13.57 55.50 0.75 -19.07 16 9 Si 0.84 21.78 28.22 -169.99 -4.80 16.98 16 10 H -0.26 -7.34 7.11 56.52 0.40 -6.93 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.41 11.18 7.50 -12.40 -0.09 11.08 16 14 O -0.60 -18.02 12.34 5.27 0.07 -17.96 16 15 C 0.07 1.68 6.58 -83.02 -0.55 1.14 16 16 C -0.09 -1.86 9.62 -39.08 -0.38 -2.24 16 17 C -0.16 -2.61 9.28 -39.14 -0.36 -2.97 16 18 C 0.13 2.07 6.57 -83.65 -0.55 1.52 16 19 N -0.64 -7.55 3.39 -187.38 -0.64 -8.19 16 20 C 0.10 0.89 10.20 59.85 0.61 1.50 16 21 C 0.10 0.86 10.20 59.85 0.61 1.47 16 22 C 0.02 0.39 10.38 -17.31 -0.18 0.21 16 23 N -0.43 -8.58 4.52 -9.64 -0.04 -8.63 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.25 7.04 -51.92 -0.37 0.89 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.08 7.96 -51.93 -0.41 0.66 16 30 H 0.11 2.32 5.03 -56.82 -0.29 2.03 16 31 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.14 2.85 7.65 -52.49 -0.40 2.45 16 33 H 0.13 1.70 6.25 -52.48 -0.33 1.37 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 36 H 0.07 0.63 6.22 -51.93 -0.32 0.30 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.61 6.19 -51.93 -0.32 0.28 16 39 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 40 H 0.14 1.91 6.14 -52.49 -0.32 1.59 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -33.04 323.15 -6.67 -39.71 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.69 Total: -0.08 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.88 Total: 2.43 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.23 Total: -45.94 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.07 Total: -17.96 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.80 Total: 16.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.04 -6.67 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358639643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.451 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds