Wall clock time and date at job start Mon Mar 30 2020 03:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47365 * 2 1 4 4 N 1.46499 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.36825 * 120.00088 * 263.46827 * 4 3 2 6 6 H 1.08003 * 120.00424 * 1.22500 * 5 4 3 7 7 C 1.39072 * 120.00310 * 181.21369 * 5 4 3 8 8 N 1.31354 * 119.99338 * 85.31156 * 7 5 4 9 9 Si 1.86795 * 120.00289 * 265.31666 * 7 5 4 10 10 H 1.48502 * 109.47163 * 89.99447 * 9 7 5 11 11 H 1.48504 * 109.47105 * 209.99702 * 9 7 5 12 12 H 1.48502 * 109.47195 * 329.99660 * 9 7 5 13 13 C 1.34776 * 119.99946 * 83.47472 * 4 3 2 14 14 O 1.21605 * 120.00385 * 185.36741 * 13 4 3 15 15 C 1.47700 * 119.99960 * 5.36275 * 13 4 3 16 16 C 1.39620 * 119.64214 * 172.52302 * 15 13 4 17 17 C 1.38190 * 119.14754 * 180.02562 * 16 15 13 18 18 C 1.39471 * 118.44621 * 0.02562 * 17 16 15 19 19 N 1.39083 * 120.40040 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99643 * 359.97438 * 19 18 17 21 21 C 1.46497 * 120.00235 * 180.02562 * 19 18 17 22 22 C 1.39464 * 119.20767 * 0.25441 * 18 17 16 23 23 N 1.31334 * 120.78143 * 359.46795 * 22 18 17 24 24 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46399 * 299.99355 * 1 2 3 26 26 H 1.08998 * 109.47585 * 59.99716 * 1 2 3 27 27 H 1.09007 * 109.46911 * 240.00566 * 2 1 3 28 28 H 1.08998 * 109.47585 * 120.00284 * 2 1 3 29 29 H 1.09001 * 109.46983 * 60.00186 * 3 2 1 30 30 H 1.08998 * 109.47000 * 300.00642 * 3 2 1 31 31 H 0.97006 * 119.99225 * 184.83659 * 8 7 5 32 32 H 1.07992 * 120.42479 * 0.04828 * 16 15 13 33 33 H 1.08004 * 120.77667 * 180.02562 * 17 16 15 34 34 H 1.09005 * 109.47069 * 270.00129 * 20 19 18 35 35 H 1.08998 * 109.46626 * 150.00382 * 20 19 18 36 36 H 1.08991 * 109.46917 * 30.00145 * 20 19 18 37 37 H 1.09002 * 109.47048 * 269.99595 * 21 19 18 38 38 H 1.09000 * 109.47368 * 30.00055 * 21 19 18 39 39 H 1.09001 * 109.46983 * 150.00211 * 21 19 18 40 40 H 1.07999 * 119.60797 * 179.72647 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 1.5771 1.1764 6 1 3.6503 1.6635 2.1081 7 6 5.5802 1.6024 1.1731 8 7 6.2158 2.7324 0.9622 9 14 6.5438 0.0297 1.4684 10 1 6.8004 -0.6447 0.1704 11 1 7.8372 0.3567 2.1207 12 1 5.7597 -0.8733 2.3488 13 6 4.1784 1.3100 -1.1606 14 8 5.3905 1.2118 -1.1523 15 6 3.4442 1.2839 -2.4419 16 6 4.1532 1.3045 -3.6445 17 6 3.4559 1.2803 -4.8374 18 6 2.0626 1.2366 -4.7917 19 7 1.3203 1.2116 -5.9676 20 6 2.0016 1.2317 -7.2644 21 6 -0.1428 1.1663 -5.9094 22 6 1.4224 1.2242 -3.5528 23 7 2.1159 1.2427 -2.4376 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 7.1832 2.7384 0.8900 32 1 5.2326 1.3384 -3.6426 33 1 3.9777 1.2949 -5.7829 34 1 2.1380 2.2639 -7.5873 35 1 1.3994 0.6976 -7.9994 36 1 2.9742 0.7486 -7.1714 37 1 -0.4738 0.1279 -5.8934 38 1 -0.4864 1.6712 -5.0066 39 1 -0.5569 1.6660 -6.7852 40 1 0.3436 1.1949 -3.5099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358639643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:12 Heat of formation + Delta-G solvation = 35.552269 kcal Electronic energy + Delta-G solvation = -22222.737634 eV Core-core repulsion = 19038.953705 eV Total energy + Delta-G solvation = -3183.783928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47123 -39.79366 -37.51116 -36.63340 -34.93031 -33.13921 -33.08898 -31.31669 -29.19562 -27.78878 -26.85461 -25.46345 -24.00084 -23.08563 -22.19722 -21.36562 -19.35199 -18.19661 -17.56707 -17.31874 -16.75384 -16.14894 -16.07310 -15.79251 -15.49271 -15.28857 -15.01991 -14.74762 -14.26824 -14.11371 -14.10109 -13.71944 -13.39444 -13.28374 -13.08457 -12.89486 -12.85180 -12.66349 -12.47411 -12.29599 -12.01706 -11.96896 -11.54552 -11.08365 -10.79825 -10.43171 -10.22521 -9.93151 -9.47588 -8.89025 -8.27160 -5.38735 0.15596 0.46359 1.30720 1.48411 1.51800 2.16441 2.20700 2.33673 2.70712 3.23819 3.31609 3.61245 3.90094 3.97300 4.22450 4.24052 4.30894 4.45388 4.49170 4.54669 4.58319 4.74121 4.81054 4.86284 4.87534 4.93362 4.97461 5.06557 5.10718 5.22396 5.26953 5.33451 5.34422 5.48968 5.54951 5.81119 5.99207 6.27044 6.39211 6.72450 7.08754 7.35014 7.63094 8.06188 8.46086 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.005877 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.580054 B = 4763.242696 C = 5658.169835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C 0.096 3.904 4 N -0.387 5.387 5 C -0.525 4.525 6 H 0.095 0.905 7 C 0.206 3.794 8 N -0.724 5.724 9 Si 0.870 3.130 10 H -0.295 1.295 11 H -0.277 1.277 12 H -0.265 1.265 13 C 0.405 3.595 14 O -0.638 6.638 15 C 0.028 3.972 16 C -0.095 4.095 17 C -0.162 4.162 18 C 0.169 3.831 19 N -0.628 5.628 20 C 0.085 3.915 21 C 0.084 3.916 22 C 0.019 3.981 23 N -0.429 5.429 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.120 0.880 31 H 0.284 0.716 32 H 0.118 0.882 33 H 0.157 0.843 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.555 -2.458 -15.867 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.149 4.149 3 C -0.027 4.027 4 N -0.099 5.099 5 C -0.641 4.641 6 H 0.113 0.887 7 C -0.027 4.027 8 N -0.346 5.346 9 Si 0.692 3.308 10 H -0.223 1.223 11 H -0.203 1.203 12 H -0.190 1.190 13 C 0.201 3.799 14 O -0.531 6.531 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.192 4.192 18 C 0.062 3.938 19 N -0.338 5.338 20 C -0.058 4.058 21 C -0.058 4.058 22 C -0.147 4.147 23 N -0.140 5.140 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.175 0.825 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.469 -2.265 -15.156 21.075 hybrid contribution 1.614 -0.614 -0.368 1.765 sum -12.855 -2.880 -15.524 20.360 Atomic orbital electron populations 1.21548 0.92740 1.01950 1.02349 1.21562 0.97657 0.96087 0.99628 1.22356 0.79096 0.98359 1.02862 1.43725 1.06389 1.54992 1.04767 1.18503 0.89542 1.69628 0.86442 0.88731 1.25266 0.97301 0.95807 0.84353 1.70724 1.11793 1.30965 1.21115 0.87138 0.78272 0.88309 0.77120 1.22266 1.20302 1.18964 1.17694 0.86845 0.91880 0.83524 1.90407 1.15018 1.62777 1.84864 1.20822 0.89990 1.06371 0.93753 1.21669 1.00811 0.97262 0.91996 1.21140 0.92536 1.07274 0.98254 1.18994 0.91441 0.94682 0.88660 1.46410 1.06164 1.78530 1.02693 1.21858 0.98452 1.02072 0.83390 1.21906 0.77464 1.02298 1.04101 1.23030 1.01139 1.04612 0.85902 1.67868 1.06624 1.09879 1.29629 0.92016 0.92504 0.91308 0.93734 0.94885 0.93225 0.86337 0.90434 0.86441 0.82529 0.92551 0.89033 0.91549 0.92242 0.90809 0.89170 0.79941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.11 -4.26 5.67 30.59 0.17 -4.08 16 3 C 0.10 4.26 4.95 86.38 0.43 4.69 16 4 N -0.39 -21.54 2.63 -638.98 -1.68 -23.22 16 5 C -0.53 -31.50 9.48 84.11 0.80 -30.70 16 6 H 0.10 5.61 8.02 -2.91 -0.02 5.58 16 7 C 0.21 12.31 3.00 84.96 0.26 12.56 16 8 N -0.72 -43.46 13.57 21.68 0.29 -43.16 16 9 Si 0.87 46.95 28.22 68.60 1.94 48.89 16 10 H -0.30 -17.47 7.11 99.48 0.71 -16.76 16 11 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 13 C 0.40 23.20 7.50 86.74 0.65 23.85 16 14 O -0.64 -40.78 12.34 -4.05 -0.05 -40.83 16 15 C 0.03 1.30 6.58 41.82 0.28 1.57 16 16 C -0.10 -3.89 9.62 22.59 0.22 -3.68 16 17 C -0.16 -4.89 9.28 22.56 0.21 -4.68 16 18 C 0.17 4.46 6.57 38.58 0.25 4.72 16 19 N -0.63 -11.21 3.39 -746.75 -2.53 -13.74 16 20 C 0.08 1.07 10.20 127.77 1.30 2.37 16 21 C 0.08 0.95 10.20 127.77 1.30 2.26 16 22 C 0.02 0.54 10.38 85.06 0.88 1.42 16 23 N -0.43 -16.38 4.52 -184.40 -0.83 -17.21 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.83 7.04 -2.38 -0.02 1.82 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 2.14 7.96 -2.39 -0.02 2.13 16 30 H 0.12 4.97 5.03 -12.04 -0.06 4.91 16 31 H 0.28 15.78 8.31 -92.70 -0.77 15.01 16 32 H 0.12 5.15 7.65 -2.91 -0.02 5.12 16 33 H 0.16 3.67 6.25 -2.91 -0.02 3.65 16 34 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.09 0.72 8.07 -2.39 -0.02 0.70 16 36 H 0.07 0.90 6.22 -2.39 -0.01 0.88 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 0.82 6.19 -2.39 -0.01 0.80 16 39 H 0.09 0.63 8.07 -2.39 -0.02 0.61 16 40 H 0.18 3.81 6.14 -2.91 -0.02 3.79 16 Total: -1.00 -78.20 323.15 5.58 -72.62 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.99 Total: 9.13 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 7.46 Total: 7.53 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -4.76 Total: -97.34 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.05 Total: -40.83 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.94 Total: 48.89 kcal Total: -78.20 5.58 -72.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358639643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.173 kcal (2) G-P(sol) polarization free energy of solvation -78.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds