Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00018 * 2 1 4 4 N 1.46499 * 109.47242 * 124.99605 * 3 2 1 5 5 C 1.46500 * 120.00123 * 270.00254 * 4 3 2 6 6 C 1.50700 * 109.47101 * 269.99899 * 5 4 3 7 7 H 1.08000 * 120.00396 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00137 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00133 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99589 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46710 * 90.00759 * 10 8 6 12 12 H 1.48503 * 109.46848 * 210.00279 * 10 8 6 13 13 H 1.48501 * 109.47397 * 330.00760 * 10 8 6 14 14 C 1.34779 * 119.99712 * 90.00414 * 4 3 2 15 15 O 1.21282 * 119.99927 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00033 * 359.97438 * 14 4 3 17 17 C 1.52996 * 109.46861 * 180.02562 * 16 14 4 18 18 C 1.53002 * 109.46969 * 179.97438 * 17 16 14 19 19 N 1.46506 * 109.47035 * 179.97438 * 18 17 16 20 20 C 1.34944 * 126.03372 * 125.00124 * 19 18 17 21 21 C 1.35317 * 107.74658 * 179.97438 * 20 19 18 22 22 C 1.39871 * 107.91935 * 0.02562 * 21 20 19 23 23 N 1.30845 * 108.20108 * 359.74200 * 22 21 20 24 24 H 1.08003 * 120.00251 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.00194 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00336 * 179.97438 * 2 1 3 27 27 H 1.09009 * 109.47082 * 4.99985 * 3 2 1 28 28 H 1.08999 * 109.47556 * 245.00381 * 3 2 1 29 29 H 1.08993 * 109.47349 * 29.99900 * 5 4 3 30 30 H 1.09005 * 109.47039 * 150.00075 * 5 4 3 31 31 H 0.97002 * 119.99916 * 179.97438 * 9 8 6 32 32 H 1.08992 * 109.46824 * 60.00123 * 16 14 4 33 33 H 1.08996 * 109.46811 * 299.99949 * 16 14 4 34 34 H 1.09004 * 109.47298 * 60.00075 * 17 16 14 35 35 H 1.09004 * 109.47552 * 299.99947 * 17 16 14 36 36 H 1.09004 * 109.46930 * 59.99996 * 18 17 16 37 37 H 1.09000 * 109.47312 * 299.99939 * 18 17 16 38 38 H 1.08001 * 126.12891 * 0.02562 * 20 19 18 39 39 H 1.08002 * 126.04160 * 179.97438 * 21 20 19 40 40 H 1.07995 * 125.90070 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5587 1.8650 2.4249 6 6 2.8440 3.3437 2.4804 7 1 3.3031 3.8372 1.6365 8 6 2.5191 4.0666 3.6086 9 7 2.7676 5.3571 3.6569 10 14 1.7244 3.2132 5.0680 11 1 2.7805 2.7222 5.9894 12 1 0.8484 4.1735 5.7861 13 1 0.9129 2.0656 4.5887 14 6 4.2496 0.8662 0.9824 15 8 5.0196 0.8880 1.9192 16 6 4.6968 0.3174 -0.3479 17 6 6.1530 -0.1411 -0.2469 18 6 6.6069 -0.6988 -1.5973 19 7 8.0015 -1.1373 -1.5008 20 6 8.4702 -2.3658 -1.8042 21 6 9.8049 -2.3646 -1.5816 22 6 10.1641 -1.0919 -1.1260 23 7 9.0846 -0.3538 -1.0821 24 1 -0.5401 0.9353 0.0004 25 1 -0.5401 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3584 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.4886 1.6967 2.5459 30 1 3.0988 1.3603 3.2260 31 1 2.5387 5.8658 4.4505 32 1 4.6119 1.0937 -1.1082 33 1 4.0678 -0.5296 -0.6215 34 1 6.2375 -0.9175 0.5135 35 1 6.7824 0.7057 0.0270 36 1 6.5223 0.0773 -2.3580 37 1 5.9775 -1.5457 -1.8708 38 1 7.8850 -3.2003 -2.1615 39 1 10.4744 -3.1992 -1.7289 40 1 11.1609 -0.7724 -0.8603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359390727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = 62.724582 kcal Electronic energy + Delta-G solvation = -20852.711758 eV Core-core repulsion = 17670.106109 eV Total energy + Delta-G solvation = -3182.605649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16297 -39.30644 -35.93316 -35.08532 -33.22132 -32.16272 -31.61479 -30.08388 -28.57700 -26.65233 -25.49497 -23.20466 -21.64687 -21.12701 -20.48698 -20.04990 -18.45189 -17.33605 -16.92444 -16.30201 -15.90046 -15.67501 -14.94041 -14.56207 -14.42288 -14.24637 -13.76171 -13.62143 -13.05921 -12.97070 -12.83387 -12.46582 -12.10768 -12.03646 -11.76283 -11.69451 -11.48665 -11.20594 -10.95473 -10.87781 -10.58012 -10.52907 -10.15307 -9.57235 -9.49837 -9.31688 -9.05222 -8.67299 -8.58949 -7.77214 -6.08818 -4.07617 1.84306 2.30926 2.44462 2.79221 3.29105 3.30994 3.35133 3.37130 3.83562 4.38315 4.39717 4.68977 4.74799 4.91859 5.02372 5.05332 5.17769 5.22667 5.25612 5.29866 5.39156 5.47245 5.53011 5.66438 5.70950 5.89975 5.90453 6.05577 6.11226 6.34921 6.58260 6.66041 6.68947 6.80176 6.93018 6.95183 7.33232 7.60972 7.65877 8.21436 8.46453 8.91579 8.97066 9.51479 11.04553 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.003862 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.724153 B = 7247.462458 C = 8263.439846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.170 4.170 3 C 0.136 3.864 4 N -0.590 5.590 5 C 0.217 3.783 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.507 3.493 15 O -0.537 6.537 16 C -0.137 4.137 17 C -0.115 4.115 18 C 0.132 3.868 19 N -0.368 5.368 20 C 0.050 3.950 21 C -0.280 4.280 22 C 0.039 3.961 23 N -0.287 5.287 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.171 0.829 39 H 0.145 0.855 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.464 -16.666 -14.254 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.189 4.189 3 C 0.012 3.988 4 N -0.321 5.321 5 C 0.097 3.903 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.294 3.706 15 O -0.414 6.414 16 C -0.178 4.178 17 C -0.154 4.154 18 C 0.011 3.989 19 N -0.150 5.150 20 C -0.097 4.097 21 C -0.309 4.309 22 C -0.148 4.148 23 N -0.109 5.109 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.189 0.811 39 H 0.162 0.838 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.216 -15.268 -13.356 20.538 hybrid contribution -0.195 -1.172 0.590 1.326 sum 3.021 -16.439 -12.766 21.032 Atomic orbital electron populations 1.23852 0.95883 1.01858 1.00481 1.23446 0.96401 0.99053 0.99996 1.20609 0.93151 0.95307 0.89735 1.47911 1.10789 1.60450 1.12954 1.19642 0.94833 0.95155 0.80704 1.21330 1.41189 0.91145 1.03107 0.90749 1.24853 0.95281 0.94722 0.98121 1.69893 1.47769 1.06603 1.29275 0.86863 0.79875 0.79666 0.83381 1.19901 1.21043 1.19061 1.20283 0.82054 0.78500 0.89756 1.90693 1.52371 1.56193 1.42142 1.21620 0.96749 1.02024 0.97412 1.21581 0.95517 1.03059 0.95200 1.21829 0.76176 1.01115 0.99734 1.48802 1.07586 1.08393 1.50238 1.22568 0.95850 0.89666 1.01599 1.21494 0.94994 0.99677 1.14775 1.23910 0.98100 0.92814 0.99936 1.77449 0.93485 1.19113 1.20823 0.88188 0.88747 0.87755 0.89256 0.90370 0.95276 0.94664 0.92553 0.88929 0.89397 0.90748 0.89400 0.89600 0.88687 0.81142 0.83770 0.80199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 14.32 29.02 0.42 -1.70 16 2 C -0.17 -2.14 9.74 -36.03 -0.35 -2.49 16 3 C 0.14 2.04 5.65 -5.20 -0.03 2.01 16 4 N -0.59 -11.86 2.44 -176.43 -0.43 -12.29 16 5 C 0.22 5.33 4.23 -5.19 -0.02 5.31 16 6 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 7 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 10 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.51 10.04 7.67 -10.99 -0.08 9.95 16 15 O -0.54 -13.27 15.56 5.56 0.09 -13.18 16 16 C -0.14 -1.79 4.25 -27.89 -0.12 -1.91 16 17 C -0.12 -1.55 4.69 -26.73 -0.13 -1.67 16 18 C 0.13 1.31 6.51 -4.04 -0.03 1.28 16 19 N -0.37 -4.44 3.68 -61.36 -0.23 -4.67 16 20 C 0.05 0.48 11.45 -17.22 -0.20 0.29 16 21 C -0.28 -2.79 10.80 -40.01 -0.43 -3.22 16 22 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 23 N -0.29 -4.16 12.42 30.63 0.38 -3.78 16 24 H 0.10 1.15 7.84 -52.48 -0.41 0.74 16 25 H 0.09 0.92 8.06 -52.48 -0.42 0.50 16 26 H 0.10 1.19 7.83 -52.49 -0.41 0.78 16 27 H 0.09 1.43 7.72 -51.92 -0.40 1.03 16 28 H 0.08 0.95 6.44 -51.93 -0.33 0.62 16 29 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 30 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.09 1.05 7.40 -51.93 -0.38 0.67 16 33 H 0.09 0.87 7.77 -51.93 -0.40 0.47 16 34 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.18 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -36.92 343.03 -6.57 -43.49 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.04 Total: 0.72 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.62 Total: -5.50 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.50 Total: -47.83 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.92 -6.57 -43.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359390727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.213 kcal (2) G-P(sol) polarization free energy of solvation -36.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds