Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 120.00018 * 2 1 4 4 N 1.46499 * 109.47242 * 124.99605 * 3 2 1 5 5 C 1.46500 * 120.00123 * 270.00254 * 4 3 2 6 6 C 1.50700 * 109.47101 * 269.99899 * 5 4 3 7 7 H 1.08000 * 120.00396 * 0.02562 * 6 5 4 8 8 C 1.37883 * 120.00137 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00133 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99589 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46710 * 90.00759 * 10 8 6 12 12 H 1.48503 * 109.46848 * 210.00279 * 10 8 6 13 13 H 1.48501 * 109.47397 * 330.00760 * 10 8 6 14 14 C 1.34779 * 119.99712 * 90.00414 * 4 3 2 15 15 O 1.21282 * 119.99927 * 180.02562 * 14 4 3 16 16 C 1.50699 * 120.00033 * 359.97438 * 14 4 3 17 17 C 1.52996 * 109.46861 * 180.02562 * 16 14 4 18 18 C 1.53002 * 109.46969 * 179.97438 * 17 16 14 19 19 N 1.46506 * 109.47035 * 179.97438 * 18 17 16 20 20 C 1.34944 * 126.03372 * 125.00124 * 19 18 17 21 21 C 1.35317 * 107.74658 * 179.97438 * 20 19 18 22 22 C 1.39871 * 107.91935 * 0.02562 * 21 20 19 23 23 N 1.30845 * 108.20108 * 359.74200 * 22 21 20 24 24 H 1.08003 * 120.00251 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.00194 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00336 * 179.97438 * 2 1 3 27 27 H 1.09009 * 109.47082 * 4.99985 * 3 2 1 28 28 H 1.08999 * 109.47556 * 245.00381 * 3 2 1 29 29 H 1.08993 * 109.47349 * 29.99900 * 5 4 3 30 30 H 1.09005 * 109.47039 * 150.00075 * 5 4 3 31 31 H 0.97002 * 119.99916 * 179.97438 * 9 8 6 32 32 H 1.08992 * 109.46824 * 60.00123 * 16 14 4 33 33 H 1.08996 * 109.46811 * 299.99949 * 16 14 4 34 34 H 1.09004 * 109.47298 * 60.00075 * 17 16 14 35 35 H 1.09004 * 109.47552 * 299.99947 * 17 16 14 36 36 H 1.09004 * 109.46930 * 59.99996 * 18 17 16 37 37 H 1.09000 * 109.47312 * 299.99939 * 18 17 16 38 38 H 1.08001 * 126.12891 * 0.02562 * 20 19 18 39 39 H 1.08002 * 126.04160 * 179.97438 * 21 20 19 40 40 H 1.07995 * 125.90070 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3319 1.1315 5 6 2.5587 1.8650 2.4249 6 6 2.8440 3.3437 2.4804 7 1 3.3031 3.8372 1.6365 8 6 2.5191 4.0666 3.6086 9 7 2.7676 5.3571 3.6569 10 14 1.7244 3.2132 5.0680 11 1 2.7805 2.7222 5.9894 12 1 0.8484 4.1735 5.7861 13 1 0.9129 2.0656 4.5887 14 6 4.2496 0.8662 0.9824 15 8 5.0196 0.8880 1.9192 16 6 4.6968 0.3174 -0.3479 17 6 6.1530 -0.1411 -0.2469 18 6 6.6069 -0.6988 -1.5973 19 7 8.0015 -1.1373 -1.5008 20 6 8.4702 -2.3658 -1.8042 21 6 9.8049 -2.3646 -1.5816 22 6 10.1641 -1.0919 -1.1260 23 7 9.0846 -0.3538 -1.0821 24 1 -0.5401 0.9353 0.0004 25 1 -0.5401 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3584 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.4886 1.6967 2.5459 30 1 3.0988 1.3603 3.2260 31 1 2.5387 5.8658 4.4505 32 1 4.6119 1.0937 -1.1082 33 1 4.0678 -0.5296 -0.6215 34 1 6.2375 -0.9175 0.5135 35 1 6.7824 0.7057 0.0270 36 1 6.5223 0.0773 -2.3580 37 1 5.9775 -1.5457 -1.8708 38 1 7.8850 -3.2003 -2.1615 39 1 10.4744 -3.1992 -1.7289 40 1 11.1609 -0.7724 -0.8603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359390727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = 37.263435 kcal Electronic energy + Delta-G solvation = -20853.815836 eV Core-core repulsion = 17670.106109 eV Total energy + Delta-G solvation = -3183.709727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.96080 -40.83932 -37.34810 -36.13567 -35.05494 -33.74267 -32.68394 -30.95233 -30.29332 -27.76067 -26.83359 -24.72766 -23.08282 -21.89937 -21.37125 -21.08412 -19.85465 -19.11808 -18.28421 -17.64408 -17.20557 -16.95987 -16.17811 -15.99498 -15.61079 -15.37103 -14.89271 -14.77404 -14.51629 -14.20964 -14.14832 -13.65280 -13.57465 -13.18302 -13.15066 -12.90422 -12.79505 -12.64750 -12.48431 -12.25704 -11.94647 -11.90069 -11.76129 -11.43966 -10.86496 -10.70006 -10.35094 -10.29228 -9.46068 -9.45215 -8.37033 -6.42044 1.06191 1.28300 1.33324 1.35630 1.42033 1.70628 1.80034 2.00806 2.27849 2.43371 2.97348 3.52229 3.70309 3.91391 4.06409 4.12491 4.15288 4.22367 4.32436 4.35881 4.46867 4.50289 4.63166 4.73590 4.78600 4.90255 4.92924 4.94078 5.04994 5.10720 5.19272 5.26071 5.43875 5.53562 5.74821 5.79745 5.95157 6.21375 6.24933 6.59377 6.69028 6.84361 7.19017 7.42007 8.80002 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.003862 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.724153 B = 7247.462458 C = 8263.439846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.179 4.179 3 C 0.130 3.870 4 N -0.597 5.597 5 C 0.227 3.773 6 C -0.537 4.537 7 H 0.029 0.971 8 C 0.010 3.990 9 N -0.945 5.945 10 Si 0.947 3.053 11 H -0.278 1.278 12 H -0.272 1.272 13 H -0.238 1.238 14 C 0.493 3.507 15 O -0.601 6.601 16 C -0.120 4.120 17 C -0.105 4.105 18 C 0.135 3.865 19 N -0.381 5.381 20 C 0.056 3.944 21 C -0.291 4.291 22 C 0.027 3.973 23 N -0.351 5.351 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.014 0.986 31 H 0.269 0.731 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.096 0.904 37 H 0.144 0.856 38 H 0.215 0.785 39 H 0.169 0.831 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -20.133 -15.980 25.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C 0.008 3.992 4 N -0.327 5.327 5 C 0.105 3.895 6 C -0.576 4.576 7 H 0.047 0.953 8 C -0.188 4.188 9 N -0.585 5.585 10 Si 0.769 3.231 11 H -0.204 1.204 12 H -0.197 1.197 13 H -0.161 1.161 14 C 0.283 3.717 15 O -0.482 6.482 16 C -0.159 4.159 17 C -0.144 4.144 18 C 0.015 3.985 19 N -0.164 5.164 20 C -0.090 4.090 21 C -0.320 4.320 22 C -0.158 4.158 23 N -0.173 5.173 24 H 0.113 0.887 25 H 0.136 0.864 26 H 0.142 0.858 27 H 0.091 0.909 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.161 0.839 38 H 0.232 0.768 39 H 0.187 0.813 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.388 -18.749 -15.145 24.142 hybrid contribution 0.404 -0.046 1.060 1.136 sum 1.793 -18.795 -14.085 23.555 Atomic orbital electron populations 1.24075 0.95686 1.02844 0.98420 1.23319 0.96622 0.98145 1.01736 1.20893 0.92658 0.96585 0.89064 1.48021 1.12089 1.59823 1.12760 1.19239 0.95275 0.92007 0.83012 1.21584 1.40539 0.93590 1.01840 0.95301 1.25858 0.95974 0.95381 1.01544 1.70047 1.49409 1.08490 1.30541 0.85732 0.79051 0.79425 0.78851 1.20399 1.19733 1.16119 1.21538 0.81126 0.77444 0.91582 1.90659 1.53964 1.58747 1.44859 1.21620 0.96859 1.04062 0.93409 1.21408 0.95115 1.00722 0.97186 1.21967 0.76012 1.03327 0.97163 1.48990 1.07721 1.09066 1.50600 1.23319 0.96210 0.89619 0.99845 1.21898 0.95914 0.99619 1.14605 1.24386 0.98381 0.93706 0.99341 1.77382 0.95095 1.21443 1.23410 0.88665 0.86360 0.85784 0.90946 0.87183 0.93580 0.96824 0.92243 0.86564 0.84540 0.92770 0.94213 0.88594 0.83865 0.76846 0.81341 0.78683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 14.32 67.79 0.97 -2.38 16 2 C -0.18 -3.86 9.74 25.65 0.25 -3.61 16 3 C 0.13 3.64 5.65 85.63 0.48 4.12 16 4 N -0.60 -23.82 2.44 -830.50 -2.03 -25.84 16 5 C 0.23 11.27 4.23 85.63 0.36 11.64 16 6 C -0.54 -32.26 9.94 25.60 0.25 -32.00 16 7 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 8 C 0.01 0.63 5.47 84.66 0.46 1.09 16 9 N -0.94 -60.83 13.96 21.45 0.30 -60.53 16 10 Si 0.95 45.45 27.47 68.60 1.88 47.33 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 14 C 0.49 19.62 7.67 87.66 0.67 20.29 16 15 O -0.60 -31.14 15.56 -3.04 -0.05 -31.19 16 16 C -0.12 -2.86 4.25 29.85 0.13 -2.73 16 17 C -0.11 -2.79 4.69 30.59 0.14 -2.64 16 18 C 0.14 2.31 6.51 86.38 0.56 2.87 16 19 N -0.38 -8.62 3.68 -348.04 -1.28 -9.90 16 20 C 0.06 0.92 11.45 83.54 0.96 1.88 16 21 C -0.29 -5.26 10.80 21.99 0.24 -5.03 16 22 C 0.03 0.63 12.03 85.24 1.03 1.66 16 23 N -0.35 -10.39 12.42 -57.02 -0.71 -11.10 16 24 H 0.10 1.93 7.84 -2.91 -0.02 1.91 16 25 H 0.12 1.77 8.06 -2.91 -0.02 1.74 16 26 H 0.12 2.21 7.83 -2.91 -0.02 2.19 16 27 H 0.07 2.26 7.72 -2.38 -0.02 2.25 16 28 H 0.11 2.33 6.44 -2.39 -0.02 2.31 16 29 H 0.05 2.12 7.13 -2.39 -0.02 2.10 16 30 H 0.01 0.74 6.85 -2.38 -0.02 0.72 16 31 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.12 2.29 7.40 -2.39 -0.02 2.27 16 33 H 0.14 2.00 7.77 -2.39 -0.02 1.98 16 34 H 0.05 1.62 8.10 -2.38 -0.02 1.60 16 35 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 36 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.14 1.06 8.07 -2.39 -0.02 1.04 16 38 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.20 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -88.83 343.03 5.58 -83.24 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.95 Total: 12.82 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.51 Total: -4.84 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -3.71 Total: -107.37 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.05 Total: -31.19 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -88.83 5.58 -83.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359390727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.508 kcal (2) G-P(sol) polarization free energy of solvation -88.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds