Wall clock time and date at job start Mon Mar 30 2020 02:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47330 * 2 1 4 4 H 1.09007 * 109.46651 * 304.99919 * 3 2 1 5 5 C 1.53000 * 109.47117 * 64.99885 * 3 2 1 6 6 C 1.50697 * 109.47360 * 185.00041 * 3 2 1 7 7 N 1.31795 * 119.03742 * 299.73046 * 6 3 2 8 8 C 1.32269 * 120.89215 * 179.75993 * 7 6 3 9 9 C 1.39230 * 119.01198 * 0.50326 * 8 7 6 10 10 N 1.39982 * 120.86740 * 179.77566 * 9 8 7 11 11 C 1.34772 * 120.00307 * 32.38622 * 10 9 8 12 12 O 1.21294 * 119.99789 * 5.26816 * 11 10 9 13 13 C 1.50702 * 120.00425 * 185.26412 * 11 10 9 14 14 C 1.53004 * 109.47003 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46509 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00615 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99703 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00272 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47104 * 60.00063 * 19 17 15 21 21 H 1.48501 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47014 * 300.00294 * 19 17 15 23 23 C 1.39233 * 118.26459 * 359.75227 * 9 8 7 24 24 N 1.31794 * 119.03904 * 119.99592 * 6 3 2 25 25 H 1.09002 * 109.47099 * 299.99914 * 1 2 3 26 26 H 1.09005 * 109.46745 * 60.00173 * 1 2 3 27 27 H 1.09002 * 109.47144 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47354 * 239.99607 * 2 1 3 29 29 H 1.09004 * 109.47269 * 119.99820 * 2 1 3 30 30 H 1.08996 * 109.47172 * 59.99725 * 5 3 2 31 31 H 1.08994 * 109.46993 * 180.02562 * 5 3 2 32 32 H 1.09006 * 109.46726 * 300.00221 * 5 3 2 33 33 H 1.08002 * 120.49115 * 180.27329 * 8 7 6 34 34 H 0.96997 * 119.99970 * 212.39679 * 10 9 8 35 35 H 1.08997 * 109.46866 * 300.00412 * 13 11 10 36 36 H 1.09000 * 109.46614 * 60.00449 * 13 11 10 37 37 H 1.09001 * 109.46996 * 299.99378 * 14 13 11 38 38 H 1.08992 * 109.47284 * 59.99855 * 14 13 11 39 39 H 0.96992 * 120.00649 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.49178 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5419 1.4443 -0.1238 7 7 4.2610 0.8448 0.8038 8 6 5.5814 0.8200 0.7291 9 6 6.2089 1.4483 -0.3433 10 7 7.6040 1.4499 -0.4583 11 6 8.3189 0.4012 -0.0048 12 8 7.7500 -0.5842 0.4152 13 6 9.8249 0.4529 -0.0198 14 6 10.3857 -0.8546 0.5433 15 6 11.8917 -0.8026 0.5289 16 1 12.3982 0.0750 0.1552 17 6 12.6230 -1.8754 0.9929 18 7 12.0062 -2.9439 1.4486 19 14 14.4898 -1.8113 0.9745 20 1 14.9543 -0.6733 1.8077 21 1 15.0341 -3.0803 1.5211 22 1 14.9651 -1.6297 -0.4207 23 6 5.4127 2.0744 -1.2985 24 7 4.0982 2.0499 -1.1538 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.0698 1.5875 2.1491 31 1 1.9983 3.1543 1.3071 32 1 0.5489 2.1252 1.3968 33 1 6.1641 0.3231 1.4906 34 1 8.0563 2.2059 -0.8642 35 1 10.1737 0.5863 -1.0438 36 1 10.1658 1.2881 0.5920 37 1 10.0369 -0.9883 1.5673 38 1 10.0447 -1.6896 -0.0687 39 1 12.5206 -3.6988 1.7746 40 1 5.8617 2.5723 -2.1452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360485353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:51 Heat of formation + Delta-G solvation = -36.368095 kcal Electronic energy + Delta-G solvation = -20549.095756 eV Core-core repulsion = 17362.193126 eV Total energy + Delta-G solvation = -3186.902629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.49360 -40.82413 -37.57032 -36.04793 -35.59104 -34.80010 -33.18981 -31.69738 -29.98346 -27.84622 -26.20661 -25.94050 -24.48519 -23.31914 -21.55148 -21.31238 -19.29480 -18.65948 -18.37669 -17.77995 -17.38062 -16.54454 -16.45101 -16.00524 -15.79231 -15.28242 -15.18405 -14.69778 -14.40271 -14.29217 -14.22465 -13.56404 -13.28108 -13.06145 -12.85530 -12.79279 -12.55409 -12.52623 -12.23534 -11.96466 -11.93691 -11.91987 -11.66562 -11.66268 -11.54175 -11.33498 -10.96873 -10.55808 -10.30381 -9.49321 -8.18343 -6.32104 -0.28332 -0.03243 1.42989 1.46723 1.50853 1.54403 1.85804 2.43219 2.65815 2.88926 3.10237 3.15385 3.40127 3.70073 3.91427 3.99801 4.03781 4.06776 4.43937 4.48923 4.53294 4.55180 4.61532 4.71597 4.74074 4.90423 5.01498 5.07098 5.09489 5.16256 5.18579 5.39029 5.46940 5.49061 5.50548 5.61958 5.84624 5.88877 6.16105 6.29490 6.86076 7.00255 7.07689 7.38464 8.93950 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040617 B = 0.002832 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.209390 B = 9883.593861 C =10293.583683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.017 4.017 4 H 0.106 0.894 5 C -0.136 4.136 6 C 0.285 3.715 7 N -0.509 5.509 8 C 0.125 3.875 9 C 0.043 3.957 10 N -0.647 5.647 11 C 0.515 3.485 12 O -0.563 6.563 13 C -0.114 4.114 14 C 0.039 3.961 15 C -0.542 4.542 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.262 1.262 23 C 0.135 3.865 24 N -0.507 5.507 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.436 0.564 35 H 0.115 0.885 36 H 0.115 0.885 37 H -0.015 1.015 38 H -0.017 1.017 39 H 0.262 0.738 40 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.268 15.107 -6.005 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C -0.038 4.038 4 H 0.124 0.876 5 C -0.194 4.194 6 C 0.017 3.983 7 N -0.222 5.222 8 C -0.043 4.043 9 C -0.057 4.057 10 N -0.296 5.296 11 C 0.305 3.695 12 O -0.439 6.439 13 C -0.154 4.154 14 C 0.002 3.998 15 C -0.580 4.580 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.217 1.217 22 H -0.187 1.187 23 C -0.035 4.035 24 N -0.219 5.219 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.173 0.827 34 H 0.278 0.722 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -19.544 14.246 -5.535 24.810 hybrid contribution 2.297 -0.479 0.099 2.349 sum -17.246 13.767 -5.436 22.727 Atomic orbital electron populations 1.21783 0.93072 1.02437 1.02987 1.21488 0.97752 0.94282 1.01464 1.20097 0.83881 0.98495 1.01287 0.87558 1.21799 1.02923 0.99539 0.95130 1.23679 0.98892 0.89595 0.86125 1.68198 1.06461 1.18145 1.29438 1.23300 0.90538 0.94742 0.95711 1.19692 0.86319 1.02735 0.96984 1.43370 1.02803 1.22151 1.61276 1.21767 0.91631 0.81132 0.74935 1.90707 1.73182 1.33658 1.46392 1.21676 0.86922 1.01637 1.05131 1.18722 0.94797 0.91911 0.94415 1.21688 0.92217 1.02304 1.41807 0.90280 1.26119 1.04509 0.95035 0.94796 1.70160 1.37900 1.06544 1.43207 0.85403 0.78496 0.77423 0.79112 1.18669 1.21660 1.18664 1.23696 0.88157 0.95345 0.96261 1.68291 1.12146 1.18570 1.22938 0.91162 0.91596 0.92261 0.93549 0.92428 0.92950 0.92972 0.89120 0.82741 0.72245 0.86658 0.86677 0.99688 0.99813 0.92915 0.77078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 71.98 0.70 -1.24 16 2 C -0.11 -2.16 5.26 30.59 0.16 -2.00 16 3 C -0.02 -0.34 2.72 -11.54 -0.03 -0.38 16 4 H 0.11 1.82 8.09 -2.38 -0.02 1.80 16 5 C -0.14 -2.30 8.84 71.98 0.64 -1.66 16 6 C 0.28 7.46 6.34 138.75 0.88 8.34 16 7 N -0.51 -15.56 9.87 -187.39 -1.85 -17.41 16 8 C 0.13 4.01 9.94 84.87 0.84 4.85 16 9 C 0.04 1.11 6.34 38.32 0.24 1.36 16 10 N -0.65 -15.26 5.37 -302.91 -1.63 -16.88 16 11 C 0.51 17.77 7.60 87.66 0.67 18.44 16 12 O -0.56 -25.45 13.68 -3.07 -0.04 -25.50 16 13 C -0.11 -4.04 5.64 29.85 0.17 -3.87 16 14 C 0.04 2.06 4.26 29.85 0.13 2.19 16 15 C -0.54 -29.54 9.11 25.60 0.23 -29.30 16 16 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 17 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 18 N -0.94 -58.54 13.29 21.45 0.28 -58.26 16 19 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 C 0.13 2.84 11.26 84.87 0.96 3.79 16 24 N -0.51 -12.37 10.29 -187.39 -1.93 -14.30 16 25 H 0.07 0.78 6.57 -2.39 -0.02 0.77 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.31 8.13 -2.38 -0.02 1.29 16 30 H 0.05 1.05 8.00 -2.39 -0.02 1.03 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.07 6.57 -2.38 -0.02 1.05 16 33 H 0.16 5.64 6.47 -2.91 -0.02 5.62 16 34 H 0.44 6.05 8.82 -92.71 -0.82 5.23 16 35 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 37 H -0.02 -0.92 8.10 -2.39 -0.02 -0.94 16 38 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 39 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -76.54 337.61 3.13 -73.42 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.22 Total: 13.11 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 6.04 Total: 0.58 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -5.12 Total: -106.86 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.04 Total: -25.50 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -76.54 3.13 -73.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360485353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.047 kcal (2) G-P(sol) polarization free energy of solvation -76.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds