Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 H 1.08994 * 109.47198 * 304.89742 * 3 2 1 5 5 C 1.50703 * 109.46781 * 184.89993 * 3 2 1 6 6 H 1.08001 * 119.99991 * 245.45001 * 5 3 2 7 7 C 1.37877 * 119.99806 * 65.45372 * 5 3 2 8 8 N 1.31513 * 120.00073 * 9.46586 * 7 5 3 9 9 Si 1.86801 * 119.99696 * 189.46675 * 7 5 3 10 10 H 1.48506 * 109.47088 * 84.99590 * 9 7 5 11 11 H 1.48507 * 109.46977 * 204.99302 * 9 7 5 12 12 H 1.48493 * 109.47490 * 324.99524 * 9 7 5 13 13 N 1.46494 * 109.47045 * 64.90193 * 3 2 1 14 14 C 1.34778 * 119.99879 * 274.99554 * 13 3 2 15 15 O 1.21280 * 120.00103 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99625 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.47006 * 299.99874 * 16 14 13 18 18 C 1.53155 * 109.46567 * 180.02562 * 16 14 13 19 19 C 1.53392 * 109.23848 * 170.50217 * 18 16 14 20 20 C 1.51045 * 108.21241 * 48.81902 * 19 18 16 21 21 N 1.30092 * 127.38778 * 164.05899 * 20 19 18 22 22 C 1.34299 * 109.20517 * 180.08584 * 21 20 19 23 23 C 1.34845 * 108.07313 * 359.96069 * 22 21 20 24 24 N 1.35416 * 123.97924 * 344.06253 * 20 19 18 25 25 C 1.46466 * 124.82355 * 359.85930 * 24 20 19 26 26 H 1.09001 * 109.47454 * 300.00314 * 1 2 3 27 27 H 1.09003 * 109.47159 * 60.00074 * 1 2 3 28 28 H 1.08999 * 109.47464 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46976 * 239.99453 * 2 1 3 30 30 H 1.09003 * 109.47159 * 119.99926 * 2 1 3 31 31 H 0.97008 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00094 * 95.00061 * 13 3 2 33 33 H 1.09000 * 109.50710 * 290.43312 * 18 16 14 34 34 H 1.09001 * 109.51169 * 50.52179 * 18 16 14 35 35 H 1.09000 * 109.71659 * 168.50465 * 19 18 16 36 36 H 1.09002 * 109.71647 * 289.13780 * 19 18 16 37 37 H 1.08006 * 125.96022 * 179.97438 * 22 21 20 38 38 H 1.08007 * 126.65527 * 179.97438 * 23 22 21 39 39 H 1.09007 * 109.57837 * 223.09091 * 25 24 20 40 40 H 1.08996 * 109.59057 * 102.68186 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6939 7 6 4.1411 0.9800 -1.2732 8 7 3.4096 0.7114 -2.3325 9 14 5.9919 0.7327 -1.3289 10 1 6.3289 -0.6069 -0.7835 11 1 6.4618 0.8273 -2.7345 12 1 6.6562 1.7807 -0.5132 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3403 2.6322 0.4298 16 6 0.0324 3.3402 2.6501 17 1 0.0624 2.6165 3.4647 18 6 -1.3881 3.8963 2.5139 19 6 -1.8799 4.3684 3.8880 20 6 -0.8056 5.2347 4.5019 21 7 -0.9280 6.0515 5.5070 22 6 0.2565 6.6372 5.7470 23 6 1.1472 6.1614 4.8534 24 7 0.4760 5.2735 4.0664 25 6 1.0040 4.4870 2.9493 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8312 0.3852 -3.1430 32 1 2.2687 2.1243 1.9977 33 1 -1.3849 4.7368 1.8199 34 1 -2.0500 3.1162 2.1378 35 1 -2.7967 4.9464 3.7718 36 1 -2.0671 3.5060 4.5278 37 1 0.4601 7.3626 6.5209 38 1 2.1901 6.4314 4.7762 39 1 1.9786 4.0794 3.2180 40 1 1.1016 5.1223 2.0690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364891799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = 7.641195 kcal Electronic energy + Delta-G solvation = -21864.032620 eV Core-core repulsion = 18679.038377 eV Total energy + Delta-G solvation = -3184.994243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.34712 -39.52312 -36.33014 -35.05349 -33.29727 -32.47936 -31.32162 -29.84379 -28.49404 -27.01306 -24.69953 -23.40247 -22.51408 -21.39394 -20.42223 -19.54396 -19.00354 -17.45318 -16.99259 -16.00172 -15.64819 -15.38627 -15.05591 -14.51026 -14.22856 -14.05383 -13.95201 -13.71213 -13.47404 -12.84177 -12.79080 -12.30386 -11.91485 -11.67831 -11.51582 -11.42401 -11.27491 -11.07825 -11.04493 -10.86595 -10.44503 -10.29515 -10.00606 -9.80006 -9.61687 -9.21719 -9.14616 -8.57610 -8.37509 -8.00923 -6.23895 -4.30045 2.02582 2.65275 3.11205 3.15687 3.18512 3.26002 3.26393 3.82451 4.24196 4.27623 4.42162 4.54278 4.70340 4.94891 5.09457 5.09777 5.15857 5.26533 5.40306 5.43253 5.51714 5.66740 5.80146 5.95645 6.12884 6.25265 6.28365 6.29345 6.49215 6.73175 6.88214 7.05396 7.11570 7.19758 7.27221 7.48683 7.59750 7.71888 7.96655 8.08091 8.49597 8.67272 8.94558 9.36171 10.84141 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023969 B = 0.004470 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.877746 B = 6262.690761 C = 7195.774386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.057 0.943 5 C -0.541 4.541 6 H 0.060 0.940 7 C 0.071 3.929 8 N -0.878 5.878 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.509 3.491 15 O -0.536 6.536 16 C -0.124 4.124 17 H 0.102 0.898 18 C -0.104 4.104 19 C -0.034 4.034 20 C 0.208 3.792 21 N -0.494 5.494 22 C -0.036 4.036 23 C -0.054 4.054 24 N -0.452 5.452 25 C 0.113 3.887 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.387 0.613 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.097 0.903 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 5.879 11.683 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.075 0.925 5 C -0.579 4.579 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.514 5.514 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.292 3.708 15 O -0.414 6.414 16 C -0.146 4.146 17 H 0.120 0.880 18 C -0.143 4.143 19 C -0.073 4.073 20 C -0.055 4.055 21 N -0.213 5.213 22 C -0.184 4.184 23 C -0.188 4.188 24 N -0.135 5.135 25 C -0.009 4.009 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.185 0.815 38 H 0.191 0.809 39 H 0.115 0.885 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.753 5.837 11.086 13.787 hybrid contribution 2.387 -0.268 -0.091 2.404 sum -3.366 5.568 10.995 12.776 Atomic orbital electron populations 1.21845 0.97996 0.98295 1.01441 1.21859 0.92995 0.99827 1.01267 1.18834 0.94440 0.88968 0.81102 0.92479 1.21142 0.90469 1.44420 1.01847 0.92145 1.24875 0.98480 0.95030 0.94962 1.69977 1.35823 1.43478 1.02156 0.86541 0.84929 0.78759 0.77346 1.20377 1.21115 1.19935 1.46559 1.14368 1.55717 1.18644 1.19879 0.83067 0.79739 0.88123 1.90703 1.51303 1.59784 1.39618 1.21716 0.96722 0.97155 0.99025 0.87984 1.21506 0.94397 1.02426 0.95941 1.20261 0.94461 0.97270 0.95307 1.23396 0.85534 1.01036 0.95495 1.70058 1.25654 1.10600 1.14977 1.22331 0.89185 1.04510 1.02365 1.22594 0.99998 0.98875 0.97290 1.45405 1.09899 1.32406 1.25767 1.21938 0.97785 0.92770 0.88420 0.94113 0.92908 0.95684 0.90172 0.94687 0.92455 0.78070 0.90584 0.88760 0.88500 0.89256 0.81462 0.80858 0.88462 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.54 16 2 C -0.12 -2.72 5.50 -26.73 -0.15 -2.86 16 3 C 0.27 6.24 2.11 -69.08 -0.15 6.09 16 4 H 0.06 1.57 7.52 -51.93 -0.39 1.18 16 5 C -0.54 -13.44 8.66 -34.44 -0.30 -13.74 16 6 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.82 5.16 -17.82 -0.09 1.73 16 8 N -0.88 -23.90 12.16 55.43 0.67 -23.23 16 9 Si 0.90 19.82 29.55 -169.99 -5.02 14.80 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 13 N -0.71 -12.87 4.92 -54.94 -0.27 -13.14 16 14 C 0.51 8.66 5.70 -10.98 -0.06 8.60 16 15 O -0.54 -11.08 12.96 5.56 0.07 -11.01 16 16 C -0.12 -1.55 2.54 -91.56 -0.23 -1.78 16 17 H 0.10 1.15 8.12 -51.93 -0.42 0.73 16 18 C -0.10 -1.24 4.68 -26.45 -0.12 -1.36 16 19 C -0.03 -0.37 6.33 -27.51 -0.17 -0.54 16 20 C 0.21 2.76 7.65 -155.24 -1.19 1.58 16 21 N -0.49 -7.22 11.24 -10.62 -0.12 -7.34 16 22 C -0.04 -0.45 11.87 -17.68 -0.21 -0.66 16 23 C -0.05 -0.62 11.64 -16.76 -0.20 -0.81 16 24 N -0.45 -5.58 3.13 -113.76 -0.36 -5.94 16 25 C 0.11 1.31 6.11 -3.93 -0.02 1.29 16 26 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 27 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 2.02 6.80 -51.93 -0.35 1.66 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.39 6.04 8.17 -40.82 -0.33 5.71 16 33 H 0.08 0.98 8.12 -51.93 -0.42 0.55 16 34 H 0.09 1.15 7.79 -51.93 -0.40 0.74 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 38 H 0.17 1.45 8.06 -52.48 -0.42 1.02 16 39 H 0.10 0.98 7.87 -51.92 -0.41 0.57 16 40 H 0.09 1.13 8.12 -51.93 -0.42 0.70 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -30.31 322.49 -8.67 -38.98 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.93 Total: 7.01 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.58 Total: -5.01 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.07 Total: -49.64 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.07 Total: -11.01 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.31 -8.67 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364891799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.625 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds