Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47083 * 2 1 4 4 H 1.08994 * 109.47198 * 304.89742 * 3 2 1 5 5 C 1.50703 * 109.46781 * 184.89993 * 3 2 1 6 6 H 1.08001 * 119.99991 * 245.45001 * 5 3 2 7 7 C 1.37877 * 119.99806 * 65.45372 * 5 3 2 8 8 N 1.31513 * 120.00073 * 9.46586 * 7 5 3 9 9 Si 1.86801 * 119.99696 * 189.46675 * 7 5 3 10 10 H 1.48506 * 109.47088 * 84.99590 * 9 7 5 11 11 H 1.48507 * 109.46977 * 204.99302 * 9 7 5 12 12 H 1.48493 * 109.47490 * 324.99524 * 9 7 5 13 13 N 1.46494 * 109.47045 * 64.90193 * 3 2 1 14 14 C 1.34778 * 119.99879 * 274.99554 * 13 3 2 15 15 O 1.21280 * 120.00103 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99625 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.47006 * 299.99874 * 16 14 13 18 18 C 1.53155 * 109.46567 * 180.02562 * 16 14 13 19 19 C 1.53392 * 109.23848 * 170.50217 * 18 16 14 20 20 C 1.51045 * 108.21241 * 48.81902 * 19 18 16 21 21 N 1.30092 * 127.38778 * 164.05899 * 20 19 18 22 22 C 1.34299 * 109.20517 * 180.08584 * 21 20 19 23 23 C 1.34845 * 108.07313 * 359.96069 * 22 21 20 24 24 N 1.35416 * 123.97924 * 344.06253 * 20 19 18 25 25 C 1.46466 * 124.82355 * 359.85930 * 24 20 19 26 26 H 1.09001 * 109.47454 * 300.00314 * 1 2 3 27 27 H 1.09003 * 109.47159 * 60.00074 * 1 2 3 28 28 H 1.08999 * 109.47464 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46976 * 239.99453 * 2 1 3 30 30 H 1.09003 * 109.47159 * 119.99926 * 2 1 3 31 31 H 0.97008 * 119.99651 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00094 * 95.00061 * 13 3 2 33 33 H 1.09000 * 109.50710 * 290.43312 * 18 16 14 34 34 H 1.09001 * 109.51169 * 50.52179 * 18 16 14 35 35 H 1.09000 * 109.71659 * 168.50465 * 19 18 16 36 36 H 1.09002 * 109.71647 * 289.13780 * 19 18 16 37 37 H 1.08006 * 125.96022 * 179.97438 * 22 21 20 38 38 H 1.08007 * 126.65527 * 179.97438 * 23 22 21 39 39 H 1.09007 * 109.57837 * 223.09091 * 25 24 20 40 40 H 1.08996 * 109.59057 * 102.68186 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6939 7 6 4.1411 0.9800 -1.2732 8 7 3.4096 0.7114 -2.3325 9 14 5.9919 0.7327 -1.3289 10 1 6.3289 -0.6069 -0.7835 11 1 6.4618 0.8273 -2.7345 12 1 6.6562 1.7807 -0.5132 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3403 2.6322 0.4298 16 6 0.0324 3.3402 2.6501 17 1 0.0624 2.6165 3.4647 18 6 -1.3881 3.8963 2.5139 19 6 -1.8799 4.3684 3.8880 20 6 -0.8056 5.2347 4.5019 21 7 -0.9280 6.0515 5.5070 22 6 0.2565 6.6372 5.7470 23 6 1.1472 6.1614 4.8534 24 7 0.4760 5.2735 4.0664 25 6 1.0040 4.4870 2.9493 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8312 0.3852 -3.1430 32 1 2.2687 2.1243 1.9977 33 1 -1.3849 4.7368 1.8199 34 1 -2.0500 3.1162 2.1378 35 1 -2.7967 4.9464 3.7718 36 1 -2.0671 3.5060 4.5278 37 1 0.4601 7.3626 6.5209 38 1 2.1901 6.4314 4.7762 39 1 1.9786 4.0794 3.2180 40 1 1.1016 5.1223 2.0690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364891799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -10.843662 kcal Electronic energy + Delta-G solvation = -21864.834184 eV Core-core repulsion = 18679.038377 eV Total energy + Delta-G solvation = -3185.795807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.27819 -40.93697 -37.57182 -36.62246 -34.40578 -34.09932 -32.97083 -30.97675 -29.46704 -28.77371 -25.75520 -25.02033 -23.77010 -22.32576 -21.91573 -21.13000 -20.02529 -18.95108 -18.02235 -17.51004 -17.11640 -16.71018 -16.33562 -16.07928 -15.31129 -15.15288 -15.04526 -14.79590 -14.62374 -14.53160 -13.95409 -13.75805 -13.38770 -13.26814 -12.97085 -12.82811 -12.69443 -12.60109 -12.23917 -12.18831 -12.05268 -11.97063 -11.60051 -11.08517 -10.97048 -10.65659 -10.57478 -10.51177 -9.65561 -9.26984 -8.19116 -6.31520 1.12219 1.44878 1.46229 1.54681 1.61419 1.91231 2.17739 2.34503 2.57493 3.13451 3.30370 3.46635 3.58657 3.65563 4.01648 4.19348 4.20536 4.34117 4.39240 4.48633 4.55552 4.58130 4.62329 4.73310 4.76816 4.95565 5.02102 5.07811 5.17689 5.26708 5.37877 5.42772 5.53686 5.61751 5.76502 5.86649 5.91039 6.08229 6.20018 6.77638 6.95658 7.15317 7.34469 7.55287 8.89283 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023969 B = 0.004470 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.877746 B = 6262.690761 C = 7195.774386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 C 0.276 3.724 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.263 1.263 13 N -0.701 5.701 14 C 0.511 3.489 15 O -0.575 6.575 16 C -0.109 4.109 17 H 0.125 0.875 18 C -0.099 4.099 19 C -0.026 4.026 20 C 0.191 3.809 21 N -0.525 5.525 22 C -0.055 4.055 23 C -0.050 4.050 24 N -0.455 5.455 25 C 0.117 3.883 26 H 0.050 0.950 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.188 0.812 38 H 0.204 0.796 39 H 0.118 0.882 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 6.001 13.857 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.173 3.827 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.187 1.187 13 N -0.350 5.350 14 C 0.296 3.704 15 O -0.455 6.455 16 C -0.130 4.130 17 H 0.143 0.857 18 C -0.137 4.137 19 C -0.065 4.065 20 C -0.071 4.071 21 N -0.245 5.245 22 C -0.202 4.202 23 C -0.183 4.183 24 N -0.138 5.138 25 C -0.005 4.005 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.205 0.795 38 H 0.221 0.779 39 H 0.136 0.864 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.729 5.977 13.311 15.339 hybrid contribution 2.030 -0.245 -0.761 2.181 sum -2.699 5.733 12.550 14.059 Atomic orbital electron populations 1.21692 0.96562 0.99381 1.00618 1.21718 0.94196 0.99122 1.00312 1.18372 0.93618 0.89050 0.81668 0.97640 1.21543 0.91440 1.43592 1.02019 0.90805 1.25710 1.02763 0.94918 0.94711 1.70126 1.37665 1.44816 1.02770 0.85511 0.79751 0.78992 0.77004 1.19803 1.21716 1.18709 1.46278 1.15399 1.55775 1.17561 1.20557 0.81920 0.78765 0.89156 1.90698 1.52299 1.60940 1.41533 1.21581 0.97155 0.97680 0.96630 0.85667 1.21435 0.94052 1.01745 0.96473 1.20274 0.94128 0.97658 0.94405 1.23775 0.86323 1.01377 0.95647 1.70033 1.26987 1.11527 1.15956 1.22796 0.88872 1.05146 1.03396 1.23116 1.01162 0.97795 0.96260 1.45469 1.09830 1.32654 1.25843 1.21908 0.98247 0.92189 0.88169 0.93089 0.95504 0.93549 0.93291 0.93271 0.92725 0.76151 0.92013 0.89049 0.87675 0.87599 0.79501 0.77909 0.86366 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.51 71.98 0.61 -4.53 16 2 C -0.11 -5.18 5.50 30.59 0.17 -5.01 16 3 C 0.28 12.99 2.11 44.25 0.09 13.09 16 4 H 0.01 0.32 7.52 -2.39 -0.02 0.31 16 5 C -0.55 -27.01 8.66 25.60 0.22 -26.79 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 1.01 5.16 84.65 0.44 1.45 16 8 N -0.92 -51.18 12.16 21.45 0.26 -50.92 16 9 Si 0.96 40.31 29.55 68.60 2.03 42.34 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 N -0.70 -24.83 4.92 -446.11 -2.20 -27.03 16 14 C 0.51 16.93 5.70 87.66 0.50 17.43 16 15 O -0.57 -24.02 12.96 -3.03 -0.04 -24.06 16 16 C -0.11 -2.49 2.54 -11.40 -0.03 -2.52 16 17 H 0.13 2.38 8.12 -2.39 -0.02 2.36 16 18 C -0.10 -2.21 4.68 30.78 0.14 -2.07 16 19 C -0.03 -0.51 6.33 30.09 0.19 -0.32 16 20 C 0.19 4.72 7.65 138.24 1.06 5.77 16 21 N -0.53 -14.53 11.24 -187.51 -2.11 -16.64 16 22 C -0.06 -1.26 11.87 83.54 0.99 -0.27 16 23 C -0.05 -1.01 11.64 83.22 0.97 -0.04 16 24 N -0.46 -10.13 3.13 -513.84 -1.61 -11.74 16 25 C 0.12 2.42 6.11 86.47 0.53 2.95 16 26 H 0.05 1.96 5.65 -2.39 -0.01 1.95 16 27 H 0.03 1.21 7.84 -2.39 -0.02 1.19 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 2.52 6.80 -2.39 -0.02 2.50 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 32 H 0.40 11.64 8.17 -92.71 -0.76 10.88 16 33 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 34 H 0.09 2.12 7.79 -2.39 -0.02 2.10 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.19 3.21 8.06 -2.91 -0.02 3.18 16 38 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.12 1.96 7.87 -2.38 -0.02 1.94 16 40 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 Total: -1.00 -66.80 322.49 2.50 -64.29 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.28 Total: 24.60 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 5.88 Total: -0.85 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -5.65 Total: -106.33 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.04 Total: -24.06 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -66.80 2.50 -64.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364891799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.451 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds