Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 N 1.46496 * 109.47373 * 180.02562 * 3 2 1 5 5 C 1.37095 * 119.99887 * 264.24810 * 4 3 2 6 6 H 1.08004 * 120.00088 * 135.66890 * 5 4 3 7 7 C 1.38943 * 120.00104 * 315.66875 * 5 4 3 8 8 N 1.31411 * 120.00301 * 2.55996 * 7 5 4 9 9 Si 1.86803 * 119.99938 * 182.56208 * 7 5 4 10 10 H 1.48491 * 109.47436 * 90.00040 * 9 7 5 11 11 H 1.48506 * 109.46947 * 210.00281 * 9 7 5 12 12 H 1.48495 * 109.47215 * 329.99645 * 9 7 5 13 13 C 1.34780 * 120.00170 * 84.24668 * 4 3 2 14 14 O 1.21296 * 119.99961 * 4.40884 * 13 4 3 15 15 C 1.50696 * 120.00146 * 184.40836 * 13 4 3 16 16 H 1.08999 * 109.71724 * 326.20134 * 15 13 4 17 17 C 1.53387 * 109.72121 * 86.80888 * 15 13 4 18 18 C 1.53021 * 109.72409 * 170.21989 * 17 15 13 19 19 C 1.53376 * 109.75261 * 288.27934 * 18 17 15 20 20 C 1.50954 * 108.20000 * 50.65286 * 19 18 17 21 21 N 1.30129 * 128.28498 * 163.22232 * 20 19 18 22 22 N 1.40311 * 108.12480 * 180.15973 * 21 20 19 23 23 H 0.97002 * 126.00157 * 179.97438 * 22 21 20 24 24 C 1.35197 * 107.99100 * 0.26244 * 22 21 20 25 25 C 1.34574 * 107.61870 * 359.54034 * 24 22 21 26 26 H 1.09006 * 109.46518 * 300.00580 * 1 2 3 27 27 H 1.08995 * 109.46769 * 59.99845 * 1 2 3 28 28 H 1.08988 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47313 * 239.99509 * 2 1 3 30 30 H 1.09004 * 109.47250 * 119.99490 * 2 1 3 31 31 H 1.08996 * 109.47824 * 59.99660 * 3 2 1 32 32 H 1.09007 * 109.46945 * 299.99611 * 3 2 1 33 33 H 0.97002 * 120.00556 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.42813 * 50.14176 * 17 15 13 35 35 H 1.09005 * 109.42855 * 290.29794 * 17 15 13 36 36 H 1.09002 * 109.42742 * 168.19811 * 18 17 15 37 37 H 1.09000 * 109.42735 * 48.36924 * 18 17 15 38 38 H 1.08999 * 109.71383 * 290.98099 * 19 18 17 39 39 H 1.08997 * 109.75531 * 170.35043 * 19 18 17 40 40 H 1.07996 * 126.18943 * 179.69105 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5613 1.1804 6 1 5.0405 0.9243 1.3780 7 6 3.7933 2.5012 2.1233 8 7 2.7298 3.2416 1.9050 9 14 4.7705 2.7125 3.7012 10 1 5.8292 3.7332 3.4950 11 1 3.8626 3.1540 4.7904 12 1 5.3965 1.4182 4.0729 13 6 4.1785 1.3257 -1.1622 14 8 3.5742 1.3010 -2.2137 15 6 5.6821 1.2257 -1.1548 16 1 6.0862 1.8224 -0.3370 17 6 6.1025 -0.2394 -0.9832 18 6 7.6085 -0.3754 -1.2178 19 6 7.9188 -0.1980 -2.7093 20 6 7.2522 1.0713 -3.1819 21 7 7.4890 1.7509 -4.2661 22 7 6.6293 2.8596 -4.2827 23 1 6.5878 3.5386 -4.9743 24 6 5.8734 2.8188 -3.1626 25 6 6.2319 1.7227 -2.4689 26 1 -0.3632 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0275 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6768 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 2.4519 3.8975 2.5634 34 1 5.5661 -0.8573 -1.7033 35 1 5.8617 -0.5698 0.0273 36 1 7.9382 -1.3626 -0.8940 37 1 8.1351 0.3878 -0.6447 38 1 7.5297 -1.0482 -3.2695 39 1 8.9964 -0.1236 -2.8552 40 1 5.1168 3.5348 -2.8774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366036612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = 22.511447 kcal Electronic energy + Delta-G solvation = -22458.566478 eV Core-core repulsion = 19274.217057 eV Total energy + Delta-G solvation = -3184.349421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.04951 -38.56481 -35.94407 -34.93460 -32.81450 -31.71668 -31.03995 -30.03144 -28.16738 -25.91316 -24.86493 -23.66322 -21.47729 -21.13099 -20.29536 -19.00687 -18.39491 -17.26611 -16.58296 -15.90533 -14.71617 -14.63279 -14.53081 -14.14802 -13.87037 -13.76077 -13.55219 -12.92797 -12.82038 -12.48249 -12.24135 -11.93855 -11.71280 -11.46605 -11.23489 -11.19166 -10.97904 -10.86869 -10.70365 -10.61650 -10.31546 -10.28301 -10.19483 -9.85845 -9.66633 -8.99471 -8.95215 -8.34828 -7.85173 -7.37430 -6.27157 -4.15659 2.37374 3.11852 3.19774 3.21073 3.22660 3.28205 3.94258 4.12122 4.84903 4.88719 5.01012 5.15727 5.35167 5.46356 5.69621 5.84750 5.86012 5.86536 5.92839 5.99143 6.03610 6.10348 6.19795 6.34856 6.39303 6.45009 6.58775 6.60270 6.66496 6.76525 6.79072 6.87467 6.91177 7.11393 7.25046 7.38440 7.69910 7.71721 8.09394 8.10514 8.45241 9.10082 9.59217 10.01714 10.68210 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.006732 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.622808 B = 4158.185115 C = 4841.960947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.107 3.893 4 N -0.443 5.443 5 C -0.331 4.331 6 H 0.088 0.912 7 C 0.044 3.956 8 N -0.871 5.871 9 Si 0.916 3.084 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.484 3.516 14 O -0.599 6.599 15 C -0.018 4.018 16 H 0.101 0.899 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.036 4.036 20 C 0.081 3.919 21 N -0.305 5.305 22 N -0.492 5.492 23 H 0.434 0.566 24 C 0.083 3.917 25 C -0.201 4.201 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.268 0.732 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -3.159 -2.908 6.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.016 4.016 4 N -0.161 5.161 5 C -0.459 4.459 6 H 0.105 0.895 7 C -0.161 4.161 8 N -0.509 5.509 9 Si 0.743 3.257 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.272 3.728 14 O -0.484 6.484 15 C -0.040 4.040 16 H 0.118 0.882 17 C -0.140 4.140 18 C -0.151 4.151 19 C -0.075 4.075 20 C -0.087 4.087 21 N -0.128 5.128 22 N -0.201 5.201 23 H 0.277 0.723 24 C -0.062 4.062 25 C -0.212 4.212 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.697 -2.933 -4.336 7.737 hybrid contribution -0.287 0.651 1.220 1.412 sum 5.410 -2.282 -3.116 6.647 Atomic orbital electron populations 1.21641 0.96781 1.00199 1.01332 1.21850 0.94612 0.99950 1.00837 1.21684 0.81768 0.94051 1.04130 1.43435 1.04661 1.63192 1.04833 1.19440 1.13689 1.18149 0.94601 0.89464 1.25524 0.96147 0.94665 0.99763 1.69637 1.23071 1.22182 1.35962 0.86098 0.79555 0.78957 0.81124 1.20188 1.20907 1.19325 1.20350 0.88790 0.79854 0.83833 1.90517 1.70287 1.55932 1.31624 1.19526 0.93766 0.96876 0.93863 0.88158 1.21418 0.95022 0.95329 1.02262 1.21562 0.96902 1.01864 0.94746 1.20095 0.99286 0.91826 0.96278 1.22252 0.96792 0.97304 0.92378 1.76825 1.15661 0.98811 1.21467 1.46169 1.31226 1.22861 1.19806 0.72350 1.22001 0.96326 0.99963 0.87952 1.19699 1.02653 0.97973 1.00916 0.92947 0.93310 0.93870 0.93400 0.92580 0.86031 0.93681 0.92070 0.92008 0.90843 0.91250 0.91354 0.90240 0.90500 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.13 -2.77 6.22 -26.73 -0.17 -2.94 16 3 C 0.11 2.55 4.90 -4.04 -0.02 2.53 16 4 N -0.44 -10.82 2.54 -114.82 -0.29 -11.11 16 5 C -0.33 -7.99 8.06 -14.94 -0.12 -8.11 16 6 H 0.09 1.99 6.50 -52.48 -0.34 1.65 16 7 C 0.04 1.06 5.36 -17.47 -0.09 0.97 16 8 N -0.87 -22.26 10.76 55.50 0.60 -21.66 16 9 Si 0.92 18.85 29.55 -169.99 -5.02 13.82 16 10 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 13 C 0.48 11.46 6.50 -10.99 -0.07 11.39 16 14 O -0.60 -15.61 15.39 5.54 0.09 -15.52 16 15 C -0.02 -0.36 2.10 -92.64 -0.19 -0.56 16 16 H 0.10 2.05 6.98 -51.93 -0.36 1.69 16 17 C -0.10 -1.74 5.13 -26.52 -0.14 -1.88 16 18 C -0.11 -1.53 5.86 -26.53 -0.16 -1.68 16 19 C -0.04 -0.50 6.31 -27.56 -0.17 -0.67 16 20 C 0.08 1.44 7.10 -82.34 -0.58 0.85 16 21 N -0.30 -5.41 12.68 33.75 0.43 -4.98 16 22 N -0.49 -7.88 7.37 30.35 0.22 -7.66 16 23 H 0.43 5.23 8.96 -182.44 -1.64 3.60 16 24 C 0.08 1.51 10.93 -17.37 -0.19 1.32 16 25 C -0.20 -3.88 5.04 -104.98 -0.53 -4.41 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.65 8.14 -51.94 -0.42 0.23 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.12 3.08 5.23 -51.93 -0.27 2.81 16 32 H 0.04 1.13 7.54 -51.93 -0.39 0.74 16 33 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.07 1.24 7.33 -51.93 -0.38 0.86 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.17 3.02 8.06 -52.49 -0.42 2.59 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -29.71 323.23 -8.34 -38.04 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.16 Total: 9.47 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.07 Total: -5.27 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.96 Total: -45.42 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.71 -8.34 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366036612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.556 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds