Wall clock time and date at job start Mon Mar 30 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 N 1.46496 * 109.47373 * 180.02562 * 3 2 1 5 5 C 1.37095 * 119.99887 * 264.24810 * 4 3 2 6 6 H 1.08004 * 120.00088 * 135.66890 * 5 4 3 7 7 C 1.38943 * 120.00104 * 315.66875 * 5 4 3 8 8 N 1.31411 * 120.00301 * 2.55996 * 7 5 4 9 9 Si 1.86803 * 119.99938 * 182.56208 * 7 5 4 10 10 H 1.48491 * 109.47436 * 90.00040 * 9 7 5 11 11 H 1.48506 * 109.46947 * 210.00281 * 9 7 5 12 12 H 1.48495 * 109.47215 * 329.99645 * 9 7 5 13 13 C 1.34780 * 120.00170 * 84.24668 * 4 3 2 14 14 O 1.21296 * 119.99961 * 4.40884 * 13 4 3 15 15 C 1.50696 * 120.00146 * 184.40836 * 13 4 3 16 16 H 1.08999 * 109.71724 * 326.20134 * 15 13 4 17 17 C 1.53387 * 109.72121 * 86.80888 * 15 13 4 18 18 C 1.53021 * 109.72409 * 170.21989 * 17 15 13 19 19 C 1.53376 * 109.75261 * 288.27934 * 18 17 15 20 20 C 1.50954 * 108.20000 * 50.65286 * 19 18 17 21 21 N 1.30129 * 128.28498 * 163.22232 * 20 19 18 22 22 N 1.40311 * 108.12480 * 180.15973 * 21 20 19 23 23 H 0.97002 * 126.00157 * 179.97438 * 22 21 20 24 24 C 1.35197 * 107.99100 * 0.26244 * 22 21 20 25 25 C 1.34574 * 107.61870 * 359.54034 * 24 22 21 26 26 H 1.09006 * 109.46518 * 300.00580 * 1 2 3 27 27 H 1.08995 * 109.46769 * 59.99845 * 1 2 3 28 28 H 1.08988 * 109.47188 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47313 * 239.99509 * 2 1 3 30 30 H 1.09004 * 109.47250 * 119.99490 * 2 1 3 31 31 H 1.08996 * 109.47824 * 59.99660 * 3 2 1 32 32 H 1.09007 * 109.46945 * 299.99611 * 3 2 1 33 33 H 0.97002 * 120.00556 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.42813 * 50.14176 * 17 15 13 35 35 H 1.09005 * 109.42855 * 290.29794 * 17 15 13 36 36 H 1.09002 * 109.42742 * 168.19811 * 18 17 15 37 37 H 1.09000 * 109.42735 * 48.36924 * 18 17 15 38 38 H 1.08999 * 109.71383 * 290.98099 * 19 18 17 39 39 H 1.08997 * 109.75531 * 170.35043 * 19 18 17 40 40 H 1.07996 * 126.18943 * 179.69105 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5613 1.1804 6 1 5.0405 0.9243 1.3780 7 6 3.7933 2.5012 2.1233 8 7 2.7298 3.2416 1.9050 9 14 4.7705 2.7125 3.7012 10 1 5.8292 3.7332 3.4950 11 1 3.8626 3.1540 4.7904 12 1 5.3965 1.4182 4.0729 13 6 4.1785 1.3257 -1.1622 14 8 3.5742 1.3010 -2.2137 15 6 5.6821 1.2257 -1.1548 16 1 6.0862 1.8224 -0.3370 17 6 6.1025 -0.2394 -0.9832 18 6 7.6085 -0.3754 -1.2178 19 6 7.9188 -0.1980 -2.7093 20 6 7.2522 1.0713 -3.1819 21 7 7.4890 1.7509 -4.2661 22 7 6.6293 2.8596 -4.2827 23 1 6.5878 3.5386 -4.9743 24 6 5.8734 2.8188 -3.1626 25 6 6.2319 1.7227 -2.4689 26 1 -0.3632 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0275 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6768 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 2.4519 3.8975 2.5634 34 1 5.5661 -0.8573 -1.7033 35 1 5.8617 -0.5698 0.0273 36 1 7.9382 -1.3626 -0.8940 37 1 8.1351 0.3878 -0.6447 38 1 7.5297 -1.0482 -3.2695 39 1 8.9964 -0.1236 -2.8552 40 1 5.1168 3.5348 -2.8774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366036612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:34 Heat of formation + Delta-G solvation = 5.304249 kcal Electronic energy + Delta-G solvation = -22459.312638 eV Core-core repulsion = 19274.217057 eV Total energy + Delta-G solvation = -3185.095581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.43870 -40.36892 -37.34223 -36.74857 -34.51840 -33.31765 -32.71753 -31.35150 -29.55875 -27.62419 -26.56963 -25.15779 -22.86701 -22.61270 -21.88914 -20.83148 -19.69798 -18.82792 -18.21087 -17.69538 -16.50597 -16.15758 -15.90681 -15.67767 -15.54640 -15.29330 -14.99919 -14.46024 -14.30134 -14.06655 -13.65971 -13.29640 -13.23674 -13.15934 -12.91957 -12.70245 -12.58187 -12.37844 -12.20491 -12.02135 -11.92132 -11.89233 -11.59657 -11.45786 -11.24201 -10.85242 -10.26594 -10.17691 -9.38229 -9.23423 -8.13887 -6.08363 0.98212 1.49152 1.52259 1.62584 1.80972 2.00316 2.14213 2.37873 3.12780 3.17738 3.57885 3.89973 4.10705 4.13896 4.23355 4.37566 4.40454 4.50423 4.54497 4.61922 4.69269 4.74123 4.80684 4.90767 5.03058 5.07266 5.10395 5.13972 5.18406 5.26934 5.28954 5.40562 5.42965 5.50765 5.53727 5.73757 5.81020 6.21615 6.46083 6.55469 6.76470 7.20768 7.71232 8.14043 8.82413 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.006732 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.622808 B = 4158.185115 C = 4841.960947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.107 3.893 4 N -0.454 5.454 5 C -0.341 4.341 6 H 0.100 0.900 7 C 0.000 4.000 8 N -0.903 5.903 9 Si 0.983 3.017 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.254 1.254 13 C 0.474 3.526 14 O -0.631 6.631 15 C -0.011 4.011 16 H 0.092 0.908 17 C -0.098 4.098 18 C -0.103 4.103 19 C -0.036 4.036 20 C 0.078 3.922 21 N -0.315 5.315 22 N -0.479 5.479 23 H 0.449 0.551 24 C 0.074 3.926 25 C -0.229 4.229 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.019 0.981 33 H 0.269 0.731 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 -4.400 -2.207 8.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.016 4.016 4 N -0.172 5.172 5 C -0.468 4.468 6 H 0.118 0.882 7 C -0.201 4.201 8 N -0.542 5.542 9 Si 0.807 3.193 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.178 1.178 13 C 0.264 3.736 14 O -0.518 6.518 15 C -0.033 4.033 16 H 0.110 0.890 17 C -0.136 4.136 18 C -0.141 4.141 19 C -0.075 4.075 20 C -0.091 4.091 21 N -0.138 5.138 22 N -0.189 5.189 23 H 0.295 0.705 24 C -0.072 4.072 25 C -0.241 4.241 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.415 -4.173 -3.652 9.260 hybrid contribution -0.885 1.092 0.937 1.689 sum 6.531 -3.081 -2.715 7.715 Atomic orbital electron populations 1.21593 0.93959 1.02118 1.01568 1.21725 0.97074 0.97398 0.99988 1.21621 0.82181 0.95744 1.02066 1.43685 1.04899 1.63157 1.05450 1.19788 1.13957 1.18576 0.94511 0.88211 1.26343 0.96820 0.94173 1.02796 1.69774 1.24478 1.22821 1.37084 0.85072 0.77932 0.79314 0.77020 1.20090 1.21201 1.17769 1.21039 0.90523 0.78929 0.83086 1.90477 1.71405 1.57347 1.32592 1.19449 0.90689 0.98958 0.94222 0.88986 1.21414 0.97705 0.92695 1.01804 1.21542 0.93840 1.04007 0.94694 1.20292 1.00556 0.90246 0.96362 1.22811 0.96277 0.98266 0.91724 1.76789 1.16105 0.99220 1.21687 1.46166 1.30299 1.22929 1.19536 0.70460 1.22049 0.96471 0.99919 0.88746 1.19865 1.04002 0.98962 1.01267 0.92511 0.93301 0.91072 0.94767 0.92650 0.87369 0.96196 0.92093 0.93345 0.90879 0.87794 0.90953 0.89221 0.87923 0.81559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.91 71.98 0.71 -3.84 16 2 C -0.12 -5.17 6.22 30.59 0.19 -4.98 16 3 C 0.11 5.31 4.90 86.38 0.42 5.73 16 4 N -0.45 -22.74 2.54 -635.55 -1.62 -24.36 16 5 C -0.34 -16.52 8.06 84.04 0.68 -15.84 16 6 H 0.10 4.49 6.50 -2.91 -0.02 4.47 16 7 C 0.00 0.00 5.36 84.92 0.45 0.46 16 8 N -0.90 -46.97 10.76 21.66 0.23 -46.73 16 9 Si 0.98 38.08 29.55 68.60 2.03 40.11 16 10 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.29 -11.15 7.11 99.48 0.71 -10.45 16 12 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 13 C 0.47 23.10 6.50 87.66 0.57 23.67 16 14 O -0.63 -34.09 15.39 -3.08 -0.05 -34.14 16 15 C -0.01 -0.44 2.10 -12.10 -0.03 -0.47 16 16 H 0.09 3.79 6.98 -2.39 -0.02 3.77 16 17 C -0.10 -3.23 5.13 30.73 0.16 -3.07 16 18 C -0.10 -2.48 5.86 30.73 0.18 -2.30 16 19 C -0.04 -0.89 6.31 30.05 0.19 -0.70 16 20 C 0.08 2.63 7.10 43.44 0.31 2.93 16 21 N -0.31 -10.73 12.68 -47.13 -0.60 -11.33 16 22 N -0.48 -15.04 7.37 -57.89 -0.43 -15.47 16 23 H 0.45 10.50 8.96 -213.18 -1.91 8.59 16 24 C 0.07 2.74 10.93 83.34 0.91 3.65 16 25 C -0.23 -8.82 5.04 -20.10 -0.10 -8.92 16 26 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.11 5.68 5.23 -2.39 -0.01 5.67 16 32 H 0.02 1.04 7.54 -2.38 -0.02 1.02 16 33 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 34 H 0.05 1.70 8.08 -2.39 -0.02 1.69 16 35 H 0.07 2.37 7.33 -2.38 -0.02 2.35 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 2.07 8.14 -2.39 -0.02 2.06 16 40 H 0.17 6.14 8.06 -2.91 -0.02 6.11 16 Total: -1.00 -64.73 323.23 3.36 -61.37 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.86 Total: 34.21 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 4.65 Total: -3.66 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -2.41 Total: -97.89 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.05 Total: -34.14 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -64.73 3.36 -61.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366036612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.675 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds