Wall clock time and date at job start Mon Mar 30 2020 02:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 14 14 C 1.34777 * 120.00660 * 275.00187 * 13 3 2 15 15 O 1.21281 * 119.99633 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00373 * 179.97438 * 14 13 3 17 17 H 1.08997 * 115.54939 * 34.28362 * 16 14 13 18 18 C 1.52997 * 117.50044 * 248.61123 * 16 14 13 19 19 C 1.52998 * 117.49789 * 179.97438 * 16 14 13 20 20 H 1.09003 * 117.50089 * 0.02562 * 19 16 14 21 21 C 1.50702 * 117.50123 * 214.98311 * 19 16 14 22 22 C 1.39870 * 126.03661 * 299.69257 * 21 19 16 23 23 N 1.30835 * 108.20305 * 179.81176 * 22 21 19 24 24 N 1.40092 * 108.20323 * 0.44351 * 23 22 21 25 25 C 1.46503 * 126.03670 * 179.69262 * 24 23 22 26 26 C 1.34946 * 107.92373 * 359.71477 * 24 23 22 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 33 33 H 0.97010 * 119.99804 * 95.00047 * 13 3 2 34 34 H 1.09002 * 117.50131 * 359.97438 * 18 16 14 35 35 H 1.08992 * 117.50085 * 144.99926 * 18 16 14 36 36 H 1.08004 * 125.90001 * 359.97438 * 22 21 19 37 37 H 1.08995 * 109.47212 * 270.02684 * 25 24 23 38 38 H 1.09001 * 109.46921 * 30.02600 * 25 24 23 39 39 H 1.09000 * 109.46718 * 150.02324 * 25 24 23 40 40 H 1.08001 * 126.12665 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0362 3.3376 2.6549 17 1 0.8406 3.8419 3.1905 18 6 -1.0601 2.6727 3.4897 19 6 -1.3585 3.9628 2.7228 20 1 -1.9878 3.8868 1.8360 21 6 -1.5154 5.2289 3.5251 22 6 -1.2553 5.3745 4.8916 23 7 -1.5035 6.6151 5.2250 24 7 -1.9398 7.2966 4.0814 25 6 -2.3295 8.7073 4.0149 26 6 -1.9382 6.4240 3.0520 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.8292 -0.0602 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 -1.4932 1.7485 3.1071 35 1 -0.9770 2.7394 4.5744 36 1 -0.9070 4.5978 5.5564 37 1 -3.3969 8.7992 4.2155 38 1 -1.7699 9.2743 4.7588 39 1 -2.1116 9.0979 3.0209 40 1 -2.2229 6.6408 2.0330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368356993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:36 Heat of formation + Delta-G solvation = 38.668155 kcal Electronic energy + Delta-G solvation = -21059.845553 eV Core-core repulsion = 17876.196740 eV Total energy + Delta-G solvation = -3183.648813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19416 -40.77318 -37.86625 -36.52804 -34.23934 -33.87698 -32.72368 -31.07220 -29.06085 -27.64157 -25.62348 -24.35399 -23.84046 -21.91354 -21.69561 -20.96936 -20.56541 -18.86113 -17.97666 -17.37799 -17.12496 -16.31458 -16.13468 -16.09665 -15.29653 -15.19973 -15.09467 -14.56984 -14.04358 -13.77783 -13.60810 -13.52234 -13.29402 -13.27331 -13.12583 -12.88492 -12.73088 -12.67191 -12.12312 -12.06552 -11.76696 -11.60532 -11.41584 -11.31512 -11.01553 -10.60628 -10.46258 -10.34964 -9.56339 -9.15995 -8.14822 -6.31936 0.92848 1.44155 1.45393 1.57067 1.62453 1.70565 1.93192 2.38088 2.72088 3.13263 3.16652 3.60885 3.93759 4.00668 4.09120 4.13572 4.37469 4.40711 4.45581 4.46315 4.52624 4.60568 4.70615 4.77644 4.80078 4.90837 5.06555 5.11436 5.19128 5.30381 5.39263 5.47377 5.59164 5.67694 5.70314 5.83314 5.97460 6.12189 6.20229 6.73636 6.77159 7.08473 7.35759 7.67477 8.90592 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.003529 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.511982 B = 7931.903009 C = 8447.621495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.704 5.704 14 C 0.526 3.474 15 O -0.590 6.590 16 C -0.185 4.185 17 H 0.134 0.866 18 C -0.125 4.125 19 C -0.038 4.038 20 H 0.103 0.897 21 C -0.219 4.219 22 C 0.052 3.948 23 N -0.331 5.331 24 N -0.382 5.382 25 C 0.093 3.907 26 C 0.062 3.938 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.203 0.797 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.533 11.389 13.960 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.352 5.352 14 C 0.314 3.686 15 O -0.472 6.472 16 C -0.207 4.207 17 H 0.152 0.848 18 C -0.163 4.163 19 C -0.058 4.058 20 H 0.121 0.879 21 C -0.231 4.231 22 C -0.133 4.133 23 N -0.153 5.153 24 N -0.164 5.164 25 C -0.047 4.047 26 C -0.085 4.085 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.151 0.849 36 H 0.219 0.781 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -10.101 12.324 14.067 21.256 hybrid contribution 1.247 -0.727 -1.101 1.815 sum -8.855 11.597 12.967 19.520 Atomic orbital electron populations 1.21671 0.96871 0.99102 1.00330 1.21773 0.93875 0.99135 1.01176 1.18347 0.93495 0.89209 0.81483 0.98569 1.21631 0.91600 1.38717 1.06615 0.91214 1.25766 1.03260 0.94436 0.95060 1.70056 1.36936 1.38492 1.09854 0.85338 0.79241 0.77830 0.78162 1.18540 1.20415 1.21015 1.46224 1.15682 1.55926 1.17355 1.20240 0.81552 0.77905 0.88926 1.90629 1.52655 1.61646 1.42263 1.22328 0.95325 1.06310 0.96704 0.84777 1.23105 0.97766 0.95884 0.99520 1.20048 0.95371 0.90664 0.99691 0.87851 1.19331 1.14673 0.94865 0.94211 1.24097 0.99289 0.94573 0.95326 1.77279 1.21979 1.07215 1.08837 1.48776 1.50923 1.10993 1.05660 1.22182 1.02180 0.74626 1.05677 1.22696 1.00643 0.89770 0.95384 0.95685 0.93621 0.93483 0.94098 0.91172 0.92638 0.76329 0.88847 0.84885 0.78066 0.89410 0.89025 0.87223 0.78769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.91 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.39 2.24 44.24 0.10 14.48 16 4 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 5 C -0.55 -29.23 8.73 25.60 0.22 -29.01 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.80 5.29 84.65 0.45 1.25 16 8 N -0.91 -52.62 11.29 21.45 0.24 -52.38 16 9 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.70 -29.33 5.02 -446.10 -2.24 -31.57 16 14 C 0.53 20.68 6.18 87.66 0.54 21.23 16 15 O -0.59 -27.79 13.39 -3.03 -0.04 -27.83 16 16 C -0.19 -5.18 5.89 -11.54 -0.07 -5.24 16 17 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 18 C -0.13 -2.79 9.73 30.60 0.30 -2.49 16 19 C -0.04 -0.96 5.76 -11.53 -0.07 -1.03 16 20 H 0.10 3.02 7.67 -2.39 -0.02 3.00 16 21 C -0.22 -5.00 5.76 -20.14 -0.12 -5.12 16 22 C 0.05 1.13 11.35 85.24 0.97 2.10 16 23 N -0.33 -7.90 12.58 -57.02 -0.72 -8.62 16 24 N -0.38 -7.54 4.01 -369.57 -1.48 -9.02 16 25 C 0.09 0.97 11.47 127.77 1.47 2.43 16 26 C 0.06 1.26 11.40 83.54 0.95 2.22 16 27 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 2.02 5.64 -2.39 -0.01 2.01 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 32 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.40 14.39 8.54 -92.70 -0.79 13.60 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.13 2.07 6.97 -2.39 -0.02 2.05 16 36 H 0.20 3.14 7.19 -2.91 -0.02 3.12 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.20 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -71.60 333.42 3.57 -68.03 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.26 Total: 26.96 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 5.53 Total: -9.92 kcal Atomic # 7 Polarization: -97.39 SS G_CDS: -4.20 Total: -101.59 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.04 Total: -27.83 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -71.60 3.57 -68.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368356993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.696 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds