Wall clock time and date at job start Mon Mar 30 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47149 * 2 1 4 4 N 1.46503 * 109.46717 * 119.99985 * 2 1 3 5 5 N 1.40297 * 126.09307 * 299.97254 * 4 2 1 6 6 C 1.31067 * 108.27304 * 179.97438 * 5 4 2 7 7 C 1.39294 * 108.07846 * 359.97438 * 6 5 4 8 8 C 1.34273 * 126.07545 * 120.00648 * 4 2 1 9 9 C 1.50826 * 128.07629 * 0.15233 * 8 4 2 10 10 H 1.08999 * 109.68280 * 283.08146 * 9 8 4 11 11 N 1.46498 * 109.67912 * 43.59608 * 9 8 4 12 12 C 1.34777 * 119.99828 * 204.20290 * 11 9 8 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 9 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 9 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46768 * 120.00068 * 18 16 14 21 21 H 1.48498 * 109.47283 * 240.00320 * 18 16 14 22 22 C 1.53364 * 108.41599 * 163.33956 * 9 8 4 23 23 C 1.53114 * 109.50654 * 49.92485 * 22 9 8 24 24 C 1.50839 * 127.90402 * 180.02562 * 7 6 5 25 25 H 1.08999 * 109.47586 * 300.00041 * 1 2 3 26 26 H 1.09000 * 109.46988 * 60.00179 * 1 2 3 27 27 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47333 * 239.99225 * 2 1 3 29 29 H 1.09000 * 109.46674 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47138 * 299.99361 * 3 2 1 31 31 H 1.08996 * 109.46972 * 60.00064 * 3 2 1 32 32 H 1.08003 * 125.96486 * 179.97438 * 6 5 4 33 33 H 0.97001 * 120.00384 * 24.48737 * 11 9 8 34 34 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 35 35 H 1.09000 * 109.46686 * 169.94009 * 22 9 8 36 36 H 1.09004 * 109.46246 * 289.93005 * 22 9 8 37 37 H 1.08996 * 109.46225 * 49.75232 * 23 22 9 38 38 H 1.09006 * 109.45833 * 169.72315 * 23 22 9 39 39 H 1.09001 * 109.68326 * 43.68623 * 24 7 6 40 40 H 1.08994 * 109.68390 * 283.13150 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 7 1.7597 -0.3241 2.5256 6 6 2.3640 -1.1802 3.3128 7 6 3.0214 -2.1127 2.5138 8 6 2.7934 -1.7868 1.2153 9 6 3.3429 -2.5580 0.0413 10 1 2.5564 -3.1751 -0.3930 11 7 3.8516 -1.6252 -0.9672 12 6 3.9345 -2.0068 -2.2572 13 8 3.5819 -3.1245 -2.5849 14 6 4.4485 -1.0769 -3.2639 15 1 4.7617 -0.0850 -2.9731 16 6 4.5351 -1.4736 -4.6043 17 7 4.1566 -2.6737 -4.9562 18 14 5.1903 -0.2865 -5.8892 19 1 5.5481 0.9995 -5.2384 20 1 6.3965 -0.8683 -6.5311 21 1 4.1479 -0.0472 -6.9194 22 6 4.4845 -3.4522 0.5406 23 6 4.0167 -4.2423 1.7658 24 6 3.8522 -3.2911 2.9571 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.3540 -1.1652 4.3927 33 1 4.1327 -0.7343 -0.7060 34 1 4.2163 -2.9483 -5.8846 35 1 4.7753 -4.1449 -0.2492 36 1 5.3388 -2.8323 0.8128 37 1 3.0611 -4.7189 1.5474 38 1 4.7558 -5.0056 2.0096 39 1 3.3494 -3.8080 3.7745 40 1 4.8318 -2.9460 3.2878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373470897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:43 Heat of formation + Delta-G solvation = 19.858101 kcal Electronic energy + Delta-G solvation = -22455.256559 eV Core-core repulsion = 19270.792081 eV Total energy + Delta-G solvation = -3184.464479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34311 -37.70105 -36.21793 -35.13988 -32.98234 -32.30112 -30.34078 -29.04730 -27.99181 -27.14711 -26.04108 -22.89742 -22.70268 -21.60730 -19.88087 -19.28013 -18.65262 -17.39372 -16.31976 -15.53916 -15.13268 -14.52441 -14.40721 -14.16469 -14.05817 -13.83882 -13.39787 -13.11724 -12.84644 -12.50044 -12.42669 -12.31997 -12.09954 -11.88620 -11.51697 -11.31877 -11.19038 -11.09318 -11.03671 -10.73201 -10.59015 -10.53900 -10.28123 -10.16590 -10.10641 -9.03740 -8.93374 -7.99618 -7.75350 -7.59522 -6.28178 -4.74612 2.16784 2.76050 3.04943 3.07091 3.16289 3.20010 4.03084 4.47336 4.66700 4.73384 4.84307 5.09563 5.12826 5.19387 5.33519 5.41231 5.43653 5.63355 5.67806 5.72890 5.83271 5.84264 5.88343 5.91678 6.00548 6.03549 6.04741 6.25325 6.26299 6.32572 6.39084 6.59221 6.64476 6.74879 6.99123 7.34638 7.37390 7.74796 7.91821 8.05489 8.21612 8.93354 9.37241 10.48486 10.66376 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018761 B = 0.006133 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.119803 B = 4564.164600 C = 5572.954738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 C -0.155 4.155 4 N -0.345 5.345 5 N -0.305 5.305 6 C 0.044 3.956 7 C -0.246 4.246 8 C 0.091 3.909 9 C 0.219 3.781 10 H 0.092 0.908 11 N -0.763 5.763 12 C 0.555 3.445 13 O -0.575 6.575 14 C -0.544 4.544 15 H 0.068 0.932 16 C 0.089 3.911 17 N -0.765 5.765 18 Si 0.906 3.094 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.035 4.035 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.176 0.824 33 H 0.380 0.620 34 H 0.269 0.731 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 3.408 11.655 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 C -0.213 4.213 4 N -0.126 5.126 5 N -0.127 5.127 6 C -0.140 4.140 7 C -0.258 4.258 8 C -0.040 4.040 9 C 0.111 3.889 10 H 0.110 0.890 11 N -0.418 5.418 12 C 0.360 3.640 13 O -0.457 6.457 14 C -0.580 4.580 15 H 0.086 0.914 16 C -0.131 4.131 17 N -0.393 5.393 18 Si 0.730 3.270 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.074 4.074 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.193 0.807 33 H 0.212 0.788 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.548 3.580 11.044 12.140 hybrid contribution 0.957 0.356 -0.411 1.101 sum -2.591 3.936 10.633 11.630 Atomic orbital electron populations 1.22086 0.93814 1.02699 1.02849 1.21630 0.95281 0.94306 0.84633 1.22071 1.01897 0.94530 1.02811 1.48510 1.37884 1.20989 1.05261 1.77359 1.24753 1.23899 0.86641 1.23434 0.97420 0.93618 0.99536 1.19878 1.10916 1.03696 0.91329 1.21393 0.95167 0.90238 0.97158 1.19226 0.95743 0.89965 0.83990 0.88991 1.46423 1.71667 1.15849 1.07883 1.18262 0.78394 0.87908 0.79481 1.90618 1.53253 1.22283 1.79575 1.20886 1.45379 1.00120 0.91660 0.91405 1.25685 0.93327 0.95032 0.99078 1.70011 1.34491 1.17188 1.17652 0.86341 0.78974 0.81055 0.80582 1.18764 1.20102 1.20110 1.21954 0.97911 0.98666 0.97397 1.21593 1.01480 0.97680 0.94786 1.19936 0.97747 0.92408 0.97262 0.91635 0.90754 0.92322 0.86005 0.92025 0.90655 0.91747 0.80718 0.78811 0.92050 0.90413 0.91855 0.91906 0.91745 0.91694 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.46 37.16 0.35 -1.81 16 2 C 0.14 2.23 3.26 -67.93 -0.22 2.01 16 3 C -0.16 -2.13 9.46 37.16 0.35 -1.77 16 4 N -0.35 -5.77 3.26 -50.68 -0.17 -5.94 16 5 N -0.31 -5.00 12.45 30.54 0.38 -4.62 16 6 C 0.04 0.64 12.00 -17.49 -0.21 0.43 16 7 C -0.25 -3.77 5.92 -105.03 -0.62 -4.39 16 8 C 0.09 1.56 6.27 -82.33 -0.52 1.05 16 9 C 0.22 4.17 2.52 -68.83 -0.17 4.00 16 10 H 0.09 1.98 7.59 -51.93 -0.39 1.58 16 11 N -0.76 -16.18 3.22 -56.10 -0.18 -16.37 16 12 C 0.55 14.76 7.72 -12.99 -0.10 14.66 16 13 O -0.58 -17.50 14.69 5.20 0.08 -17.42 16 14 C -0.54 -14.55 9.54 -35.63 -0.34 -14.89 16 15 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 16 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 17 N -0.76 -22.04 11.83 55.55 0.66 -21.39 16 18 Si 0.91 19.43 29.56 -169.99 -5.02 14.41 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 C -0.12 -2.07 5.49 -26.48 -0.15 -2.21 16 23 C -0.12 -1.62 5.90 -26.50 -0.16 -1.78 16 24 C -0.04 -0.45 6.28 -27.64 -0.17 -0.62 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.12 2.19 6.02 -51.93 -0.31 1.88 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.18 1.92 8.06 -52.48 -0.42 1.49 16 33 H 0.38 7.49 8.29 -40.82 -0.34 7.16 16 34 H 0.27 7.03 8.29 -40.82 -0.34 6.70 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 37 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -31.89 329.38 -7.43 -39.31 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.08 Total: 10.08 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.05 Total: -3.04 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.69 Total: -48.30 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.08 Total: -17.42 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.89 -7.43 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373470897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.172 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds