Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47464 * 2 1 4 4 H 1.09004 * 109.46719 * 304.99944 * 3 2 1 5 5 C 1.50700 * 109.47618 * 185.00129 * 3 2 1 6 6 H 1.08000 * 120.00392 * 240.00271 * 5 3 2 7 7 C 1.37877 * 119.99720 * 59.99737 * 5 3 2 8 8 N 1.31512 * 120.00374 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00005 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46848 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47173 * 119.99696 * 9 7 5 12 12 H 1.48496 * 109.47371 * 239.99959 * 9 7 5 13 13 N 1.46504 * 109.47357 * 64.99700 * 3 2 1 14 14 C 1.34771 * 120.00090 * 275.00583 * 13 3 2 15 15 O 1.21686 * 120.00148 * 354.84626 * 14 13 3 16 16 C 1.46770 * 120.00022 * 174.84280 * 14 13 3 17 17 C 1.36826 * 126.91204 * 186.14172 * 16 14 13 18 18 N 1.33459 * 107.83323 * 179.97438 * 17 16 14 19 19 C 1.30560 * 109.68372 * 359.97438 * 18 17 16 20 20 N 1.34876 * 108.99046 * 359.82141 * 19 18 17 21 21 C 1.46442 * 124.98989 * 179.55082 * 20 19 18 22 22 C 1.53265 * 108.87655 * 343.41740 * 21 20 19 23 23 C 1.53160 * 109.43521 * 50.03468 * 22 21 20 24 24 C 1.51112 * 127.09031 * 180.02562 * 19 18 17 25 25 H 1.09006 * 109.46669 * 299.99908 * 1 2 3 26 26 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47262 * 60.00249 * 1 2 3 28 28 H 1.09007 * 109.47232 * 120.00062 * 2 1 3 29 29 H 1.09006 * 109.47132 * 239.99827 * 2 1 3 30 30 H 0.96997 * 120.00506 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99418 * 95.00177 * 13 3 2 32 32 H 1.07993 * 126.08355 * 359.91229 * 17 16 14 33 33 H 1.09008 * 109.71807 * 223.50331 * 21 20 19 34 34 H 1.08995 * 109.38222 * 103.13790 * 21 20 19 35 35 H 1.08998 * 109.48219 * 290.04465 * 22 21 20 36 36 H 1.08998 * 109.47548 * 170.01793 * 22 21 20 37 37 H 1.09002 * 109.51426 * 170.73558 * 23 22 21 38 38 H 1.08995 * 109.55730 * 50.61123 * 23 22 21 39 39 H 1.09002 * 109.70745 * 283.68422 * 24 19 18 40 40 H 1.09003 * 109.70875 * 44.26179 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8799 -1.3813 10 1 6.5988 1.5441 -0.1932 11 1 6.4961 -0.5191 -1.4627 12 1 6.4000 1.6155 -2.6093 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3060 2.7152 0.4032 16 6 0.0035 3.2204 2.6548 17 6 -1.2335 3.7184 2.9616 18 7 -1.2078 4.1213 4.2337 19 6 -0.0245 3.9029 4.7403 20 7 0.7595 3.3407 3.7979 21 6 2.1604 2.9591 3.9892 22 6 2.6985 3.6596 5.2416 23 6 1.7320 3.4322 6.4078 24 6 0.4350 4.2086 6.1471 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8292 -0.0620 -2.9495 31 1 2.2720 2.1231 1.9978 32 1 -2.0796 3.7762 2.2931 33 1 2.7460 3.2622 3.1211 34 1 2.2266 1.8788 4.1179 35 1 2.7906 4.7285 5.0491 36 1 3.6764 3.2503 5.4951 37 1 2.1879 3.7854 7.3327 38 1 1.5090 2.3689 6.4948 39 1 0.6195 5.2780 6.2493 40 1 -0.3295 3.8979 6.8592 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376926509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = 9.611256 kcal Electronic energy + Delta-G solvation = -22218.454942 eV Core-core repulsion = 19033.546127 eV Total energy + Delta-G solvation = -3184.908815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.32058 -38.76515 -36.80761 -35.09466 -33.58844 -32.25944 -30.91250 -29.94158 -28.78730 -27.02765 -24.62352 -23.44503 -22.68922 -21.77709 -20.28690 -19.57392 -19.20802 -17.61203 -16.30739 -16.15052 -15.46306 -15.21531 -14.76943 -14.65034 -14.38469 -14.32384 -14.12055 -13.76006 -13.15841 -12.81263 -12.72483 -12.26295 -11.98560 -11.59830 -11.41159 -11.39909 -11.33364 -11.19220 -11.03612 -10.90813 -10.38524 -10.27222 -10.05899 -9.72091 -9.56540 -9.25855 -9.11204 -8.58264 -8.29097 -7.89174 -6.19344 -4.29622 1.62946 2.65343 3.03676 3.17915 3.25745 3.27544 3.90065 3.96644 4.13676 4.28264 4.32031 4.40068 4.47334 4.92153 4.98880 5.10900 5.12173 5.24418 5.41545 5.44717 5.51178 5.55964 5.64097 5.84240 5.86668 6.21915 6.33586 6.39263 6.59283 6.74898 6.97195 7.11338 7.16499 7.27887 7.33565 7.53546 7.63136 7.81958 8.08678 8.10183 8.53325 8.68898 8.98138 9.37687 10.86025 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.005488 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.386015 B = 5100.745890 C = 6116.891127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.711 5.711 14 C 0.580 3.420 15 O -0.533 6.533 16 C -0.071 4.071 17 C 0.048 3.952 18 N -0.496 5.496 19 C 0.218 3.782 20 N -0.437 5.437 21 C 0.087 3.913 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.033 4.033 25 H 0.035 0.965 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.101 0.899 30 H 0.265 0.735 31 H 0.382 0.618 32 H 0.181 0.819 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 4.530 16.298 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.361 5.361 14 C 0.364 3.636 15 O -0.411 6.411 16 C -0.187 4.187 17 C -0.105 4.105 18 N -0.215 5.215 19 C -0.044 4.044 20 N -0.122 5.122 21 C -0.036 4.036 22 C -0.171 4.171 23 C -0.165 4.165 24 C -0.072 4.072 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.218 0.782 32 H 0.198 0.802 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.422 4.704 15.788 16.535 hybrid contribution 1.971 -0.478 -0.341 2.057 sum 0.549 4.226 15.447 16.024 Atomic orbital electron populations 1.21833 0.98346 0.98393 1.01125 1.21938 0.92644 0.99649 1.02349 1.18869 0.94407 0.89208 0.80864 0.92861 1.21197 0.90511 1.39341 1.06406 0.92280 1.24876 0.98639 0.94707 0.95312 1.69892 1.35103 1.37329 1.09310 0.86407 0.84765 0.77830 0.78168 1.19814 1.20800 1.20780 1.46777 1.14254 1.56071 1.18989 1.16853 0.82930 0.78551 0.85233 1.90812 1.54113 1.58880 1.37247 1.21591 0.94592 1.13599 0.88891 1.22568 0.96031 0.99431 0.92486 1.69947 1.19086 1.23083 1.09389 1.23345 0.87166 1.00153 0.93765 1.45365 1.11259 1.45467 1.10086 1.22280 0.79053 1.01482 1.00738 1.21910 0.99991 1.01914 0.93278 1.21703 0.94790 1.01325 0.98650 1.20242 0.97460 1.01494 0.88033 0.94566 0.95505 0.92943 0.95120 0.88040 0.92489 0.78237 0.80193 0.88109 0.88820 0.90377 0.88796 0.89819 0.90927 0.89152 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.58 37.16 0.32 -2.80 16 2 C -0.13 -3.05 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.66 2.25 -69.08 -0.16 6.50 16 4 H 0.05 1.54 7.51 -51.93 -0.39 1.15 16 5 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.49 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.71 -14.87 5.00 -56.21 -0.28 -15.15 16 14 C 0.58 12.22 6.15 -12.81 -0.08 12.14 16 15 O -0.53 -12.87 14.47 5.20 0.08 -12.79 16 16 C -0.07 -1.28 6.93 -82.35 -0.57 -1.85 16 17 C 0.05 0.84 11.68 -17.36 -0.20 0.63 16 18 N -0.50 -8.16 11.20 -10.36 -0.12 -8.28 16 19 C 0.22 3.02 7.63 -155.32 -1.19 1.84 16 20 N -0.44 -6.37 3.16 -109.76 -0.35 -6.72 16 21 C 0.09 0.98 5.28 -3.94 -0.02 0.96 16 22 C -0.13 -1.03 5.95 -26.51 -0.16 -1.19 16 23 C -0.13 -0.87 5.96 -26.45 -0.16 -1.03 16 24 C -0.03 -0.30 6.33 -27.48 -0.17 -0.47 16 25 H 0.04 0.80 5.75 -51.93 -0.30 0.50 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.24 7.92 -51.93 -0.41 0.83 16 28 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.38 6.92 4.57 -40.82 -0.19 6.73 16 32 H 0.18 2.94 8.06 -52.49 -0.42 2.51 16 33 H 0.10 1.23 6.59 -51.92 -0.34 0.88 16 34 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 35 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -31.31 317.71 -8.90 -40.21 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.70 Total: 7.27 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.92 Total: -0.84 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.12 Total: -53.63 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.31 -8.90 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376926509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.822 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds