Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46857 * 2 1 4 4 H 1.09000 * 109.47478 * 305.00073 * 3 2 1 5 5 N 1.46907 * 109.47054 * 65.00113 * 3 2 1 6 6 C 1.53003 * 109.47121 * 185.00010 * 3 2 1 7 7 N 1.46501 * 109.47359 * 185.00197 * 6 3 2 8 8 C 1.34773 * 120.00101 * 179.97438 * 7 6 3 9 9 O 1.21585 * 119.99820 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00000 * 180.02562 * 8 7 6 11 11 C 1.39244 * 120.00328 * 175.71100 * 10 8 7 12 12 C 1.39481 * 119.83838 * 215.02366 * 11 10 8 13 13 C 1.36371 * 120.17170 * 179.75956 * 12 11 10 14 14 C 1.40873 * 119.82450 * 0.53160 * 13 12 11 15 15 C 1.41155 * 120.16078 * 179.69726 * 14 13 12 16 16 H 1.08001 * 120.00049 * 214.80094 * 15 14 13 17 17 C 1.39897 * 120.00171 * 34.80578 * 15 14 13 18 18 N 1.30879 * 119.99830 * 355.55680 * 17 15 14 19 19 Si 1.86802 * 120.00080 * 175.55643 * 17 15 14 20 20 H 1.48496 * 109.47245 * 59.99827 * 19 17 15 21 21 H 1.48500 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46877 * 299.99964 * 19 17 15 23 23 C 1.40865 * 119.67336 * 359.72071 * 14 13 12 24 24 C 1.36378 * 119.82962 * 359.97438 * 23 14 13 25 25 H 1.09005 * 109.47227 * 60.00162 * 1 2 3 26 26 H 1.09006 * 109.47091 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47457 * 299.99658 * 1 2 3 28 28 H 1.09007 * 109.46963 * 240.00082 * 2 1 3 29 29 H 1.09001 * 109.46979 * 120.00550 * 2 1 3 30 30 H 1.00898 * 110.99832 * 60.00120 * 5 3 2 31 31 H 1.00899 * 110.99647 * 183.95006 * 5 3 2 32 32 H 1.08999 * 109.46805 * 305.00284 * 6 3 2 33 33 H 1.08997 * 109.47300 * 64.99872 * 6 3 2 34 34 H 0.97000 * 119.99695 * 0.02562 * 7 6 3 35 35 H 0.97000 * 120.00351 * 355.71424 * 10 8 7 36 36 H 1.08005 * 119.91113 * 359.97438 * 12 11 10 37 37 H 1.07994 * 120.08799 * 180.24943 * 13 12 11 38 38 H 0.96999 * 120.00045 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.08638 * 179.97438 * 23 14 13 40 40 H 1.07994 * 119.91267 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6513 2.0992 1.2553 6 6 3.5648 1.4444 -0.1257 7 7 4.0630 2.8168 -0.0059 8 6 5.3856 3.0630 -0.0858 9 8 6.1654 2.1459 -0.2568 10 7 5.8440 4.3255 0.0250 11 6 7.2147 4.5705 0.0321 12 6 7.7315 5.6003 0.8182 13 6 9.0733 5.8431 0.8341 14 6 9.9368 5.0578 0.0453 15 6 11.3262 5.3071 0.0515 16 1 11.9033 5.1704 -0.8511 17 6 11.9556 5.7310 1.2267 18 7 11.2442 5.9803 2.2967 19 14 13.8112 5.9413 1.2689 20 1 14.2180 6.9517 0.2596 21 1 14.2273 6.3954 2.6202 22 1 14.4636 4.6434 0.9607 23 6 9.4068 4.0230 -0.7501 24 6 8.0634 3.7882 -0.7508 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 2.0422 1.6179 2.0513 31 1 1.9203 3.0717 1.2529 32 1 3.9953 0.8311 0.6659 33 1 3.8499 1.0377 -1.0960 34 1 3.4409 3.5483 0.1316 35 1 5.2191 5.0636 0.0997 36 1 7.0676 6.2048 1.4185 37 1 9.4724 6.6382 1.4463 38 1 11.6806 6.2739 3.1117 39 1 10.0627 3.4172 -1.3577 40 1 7.6557 2.9949 -1.3597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414753126.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = -38.965415 kcal Electronic energy + Delta-G solvation = -20633.127992 eV Core-core repulsion = 17446.112734 eV Total energy + Delta-G solvation = -3187.015258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48287 -39.43815 -38.24835 -36.15437 -35.08357 -34.45413 -31.91992 -31.47955 -30.73226 -28.73182 -26.67169 -24.40669 -23.28061 -22.58668 -21.91485 -21.39419 -19.49783 -19.12894 -18.28170 -17.35149 -17.06613 -16.53505 -16.30452 -15.79179 -15.64308 -15.40565 -14.97348 -14.52429 -14.47136 -14.30598 -13.99563 -13.65796 -13.59145 -13.22738 -12.93617 -12.79589 -12.73768 -12.48193 -12.39915 -11.87114 -11.78885 -11.68118 -11.40372 -11.25879 -11.03893 -10.67939 -10.17594 -9.69772 -9.46398 -8.69437 -8.49428 -6.31880 0.84646 1.14469 1.39672 1.48934 1.51927 1.70314 2.16630 2.25124 2.81758 3.29885 3.63534 3.68719 3.75716 4.06322 4.22105 4.39199 4.44241 4.52278 4.66641 4.69379 4.91954 4.94101 4.97997 5.12988 5.14769 5.20343 5.32497 5.35152 5.40047 5.44457 5.54585 5.68920 5.80236 6.02724 6.10141 6.16879 6.24291 6.40272 6.50963 6.68764 6.97545 7.01407 7.10785 7.61483 8.43232 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051408 B = 0.002846 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.534091 B = 9836.812237 C =10002.241609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.095 3.905 4 H 0.095 0.905 5 N -0.836 5.836 6 C 0.104 3.896 7 N -0.727 5.727 8 C 0.691 3.309 9 O -0.625 6.625 10 N -0.657 5.657 11 C 0.040 3.960 12 C -0.119 4.119 13 C -0.158 4.158 14 C 0.065 3.935 15 C -0.499 4.499 16 H 0.072 0.928 17 C 0.027 3.973 18 N -0.842 5.842 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.266 1.266 23 C -0.221 4.221 24 C -0.098 4.098 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.344 0.656 31 H 0.344 0.656 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.409 0.591 35 H 0.415 0.585 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.589 -4.034 -1.197 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C -0.018 4.018 4 H 0.113 0.887 5 N -0.366 5.366 6 C -0.023 4.023 7 N -0.385 5.385 8 C 0.392 3.608 9 O -0.505 6.505 10 N -0.305 5.305 11 C -0.054 4.054 12 C -0.139 4.139 13 C -0.178 4.178 14 C 0.063 3.937 15 C -0.530 4.530 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.470 5.470 19 Si 0.809 3.191 20 H -0.182 1.182 21 H -0.192 1.192 22 H -0.191 1.191 23 C -0.241 4.241 24 C -0.119 4.119 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.252 0.748 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.695 -4.979 -1.308 19.391 hybrid contribution 1.606 0.703 0.293 1.778 sum -17.089 -4.275 -1.015 17.645 Atomic orbital electron populations 1.21605 0.94321 1.01369 1.02305 1.21483 0.97287 0.93998 1.02499 1.21688 0.88637 0.97287 0.94155 0.88689 1.59006 1.66722 1.07128 1.03742 1.22145 0.96925 0.81542 1.01657 1.44840 1.04314 1.10674 1.78701 1.16221 0.83268 0.83070 0.78270 1.90895 1.56600 1.45132 1.57909 1.41861 1.05544 1.06833 1.76275 1.17085 0.82323 1.02516 1.03506 1.20530 0.95511 0.99149 0.98753 1.21173 0.91852 1.01524 1.03280 1.18031 0.94206 0.89949 0.91515 1.19684 0.93668 1.42106 0.97495 0.90980 1.26735 1.05591 0.91810 0.94341 1.69820 1.39249 1.35410 1.02528 0.85157 0.75883 0.79488 0.78540 1.18201 1.19216 1.19098 1.20928 0.94819 1.00889 1.07424 1.20514 0.93369 0.99283 0.98695 0.92846 0.92720 0.92111 0.91047 0.91915 0.84305 0.84211 0.93068 0.92434 0.75390 0.74814 0.85615 0.86216 0.90493 0.88727 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.80 71.98 0.71 -0.93 16 2 C -0.11 -1.44 5.58 30.59 0.17 -1.27 16 3 C 0.09 1.25 2.98 44.91 0.13 1.39 16 4 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 5 N -0.84 -9.97 8.63 -168.67 -1.46 -11.42 16 6 C 0.10 2.08 5.34 86.38 0.46 2.54 16 7 N -0.73 -15.77 5.35 -478.55 -2.56 -18.33 16 8 C 0.69 23.45 8.39 179.06 1.50 24.96 16 9 O -0.63 -27.93 13.76 -3.98 -0.05 -27.99 16 10 N -0.66 -21.72 5.31 -316.79 -1.68 -23.41 16 11 C 0.04 1.76 6.31 38.56 0.24 2.00 16 12 C -0.12 -5.34 9.90 22.13 0.22 -5.12 16 13 C -0.16 -8.33 8.62 22.48 0.19 -8.13 16 14 C 0.07 3.67 5.55 -21.28 -0.12 3.55 16 15 C -0.50 -27.81 9.02 23.39 0.21 -27.60 16 16 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 17 C 0.03 1.40 5.42 85.24 0.46 1.86 16 18 N -0.84 -44.89 10.60 21.82 0.23 -44.66 16 19 Si 0.99 39.61 29.56 68.60 2.03 41.64 16 20 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 23 C -0.22 -11.77 9.74 22.48 0.22 -11.56 16 24 C -0.10 -4.88 8.61 22.14 0.19 -4.68 16 25 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.80 7.75 -2.39 -0.02 0.78 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.34 4.26 9.00 -89.70 -0.81 3.45 16 31 H 0.34 3.44 7.53 -89.69 -0.68 2.76 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.41 5.78 7.17 -92.71 -0.67 5.12 16 35 H 0.41 9.83 8.83 -92.71 -0.82 9.01 16 36 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 37 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 38 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 39 H 0.09 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.11 5.25 6.22 -2.91 -0.02 5.23 16 Total: -1.00 -69.18 331.68 -0.77 -69.96 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -1.88 Total: 37.22 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 4.59 Total: -23.01 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -5.47 Total: -97.82 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -69.18 -0.77 -69.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414753126.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.991 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds