Wall clock time and date at job start Mon Mar 30 2020 02:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 H 1.08995 * 109.46818 * 305.00439 * 3 2 1 5 5 N 1.46900 * 109.46920 * 65.00409 * 3 2 1 6 6 C 1.52994 * 109.46944 * 185.00136 * 3 2 1 7 7 N 1.46497 * 109.47278 * 185.00133 * 6 3 2 8 8 C 1.34771 * 120.00512 * 180.02562 * 7 6 3 9 9 O 1.21586 * 119.99877 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00387 * 180.02562 * 8 7 6 11 11 C 1.39956 * 120.00346 * 174.84981 * 10 8 7 12 12 C 1.39291 * 119.94924 * 145.76626 * 11 10 8 13 13 C 1.38491 * 120.42684 * 180.02562 * 12 11 10 14 14 C 1.37677 * 120.32486 * 359.97438 * 13 12 11 15 15 C 1.40742 * 119.88063 * 359.97438 * 14 13 12 16 16 C 1.41411 * 120.20799 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99952 * 205.17512 * 16 15 14 18 18 C 1.39929 * 120.00043 * 25.17866 * 16 15 14 19 19 N 1.30837 * 120.00049 * 16.78900 * 18 16 15 20 20 Si 1.86797 * 120.00131 * 196.78380 * 18 16 15 21 21 H 1.48503 * 109.47128 * 94.96477 * 20 18 16 22 22 H 1.48500 * 109.47464 * 214.96553 * 20 18 16 23 23 H 1.48495 * 109.47270 * 334.96671 * 20 18 16 24 24 C 1.38237 * 119.94286 * 325.49143 * 11 10 8 25 25 H 1.08997 * 109.47143 * 59.99407 * 1 2 3 26 26 H 1.09003 * 109.46834 * 299.99737 * 1 2 3 27 27 H 1.08998 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46889 * 120.00112 * 2 1 3 29 29 H 1.09003 * 109.46834 * 240.00263 * 2 1 3 30 30 H 1.00903 * 111.00124 * 296.04352 * 5 3 2 31 31 H 1.00899 * 111.00636 * 59.99718 * 5 3 2 32 32 H 1.08997 * 109.47653 * 305.00038 * 6 3 2 33 33 H 1.09002 * 109.47401 * 65.00343 * 6 3 2 34 34 H 0.97005 * 119.99579 * 0.02562 * 7 6 3 35 35 H 0.97006 * 119.99778 * 354.84415 * 10 8 7 36 36 H 1.08003 * 119.78394 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.83160 * 180.02562 * 13 12 11 38 38 H 1.07991 * 120.06027 * 179.97438 * 14 13 12 39 39 H 0.96994 * 119.99818 * 180.02562 * 19 18 16 40 40 H 1.07992 * 120.16199 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 7 1.6515 2.0992 1.2553 6 6 3.5648 1.4443 -0.1258 7 7 4.0631 2.8167 -0.0060 8 6 5.3857 3.0629 -0.0869 9 8 6.1654 2.1460 -0.2588 10 7 5.8441 4.3255 0.0239 11 6 7.2219 4.5701 0.0481 12 6 7.7327 5.7291 -0.5316 13 6 9.0944 5.9809 -0.5137 14 6 9.9587 5.0876 0.0783 15 6 9.4569 3.9128 0.6690 16 6 10.3386 2.9903 1.2784 17 1 10.0583 1.9507 1.3632 18 6 11.5739 3.4244 1.7718 19 7 11.7861 4.6995 1.9742 20 14 12.9202 2.1834 2.1417 21 1 13.8263 2.0722 0.9704 22 1 13.6953 2.6321 3.3262 23 1 12.3094 0.8593 2.4224 24 6 8.0731 3.6639 0.6524 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 0.6477 2.1683 1.3316 31 1 2.0423 1.6179 2.0513 32 1 3.9955 0.8311 0.6658 33 1 3.8499 1.0377 -1.0961 34 1 3.4411 3.5482 0.1316 35 1 5.2191 5.0646 0.0867 36 1 7.0624 6.4360 -0.9980 37 1 9.4800 6.8828 -0.9657 38 1 11.0198 5.2880 0.0894 39 1 12.6426 5.0004 2.3158 40 1 7.6776 2.7670 1.1056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415819289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:56 Heat of formation + Delta-G solvation = -20.003832 kcal Electronic energy + Delta-G solvation = -20770.974047 eV Core-core repulsion = 17584.781025 eV Total energy + Delta-G solvation = -3186.193022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.82195 -37.88330 -36.95549 -34.33566 -33.74971 -32.85892 -31.03547 -29.71855 -28.69636 -27.20673 -25.19877 -23.64896 -21.42590 -21.00776 -20.73529 -19.80272 -17.84980 -17.55207 -16.54593 -15.85877 -15.30601 -15.15863 -14.79411 -14.70604 -14.43193 -14.11910 -13.92678 -13.56278 -12.94628 -12.81178 -12.71488 -12.25287 -12.03577 -11.82862 -11.55883 -11.34013 -11.20127 -11.07450 -11.06735 -10.81676 -10.38382 -10.09056 -9.60250 -9.38269 -9.06811 -9.01782 -8.90044 -8.70846 -7.34633 -6.78159 -6.61249 -4.24553 2.82194 2.97645 3.14681 3.19040 3.20997 3.29453 3.86106 4.03327 4.25382 4.41740 4.60369 4.68995 4.74459 4.83681 5.09391 5.16522 5.29953 5.56006 5.58421 5.74069 5.78798 5.82288 5.92502 6.33552 6.50067 6.68297 6.86920 6.92341 6.96060 7.12321 7.14184 7.19473 7.34664 7.49282 7.80358 7.96685 8.10502 8.20977 8.35871 8.59887 8.76617 9.00831 9.07749 9.19924 10.30437 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.003471 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.740906 B = 8063.856800 C = 8934.731160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.158 4.158 3 C 0.079 3.921 4 H 0.086 0.914 5 N -0.842 5.842 6 C 0.148 3.852 7 N -0.740 5.740 8 C 0.696 3.304 9 O -0.573 6.573 10 N -0.682 5.682 11 C 0.171 3.829 12 C -0.263 4.263 13 C -0.092 4.092 14 C -0.174 4.174 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.209 4.209 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.341 0.659 31 H 0.344 0.656 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.278 0.722 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.458 -4.008 -1.891 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.199 4.199 3 C -0.033 4.033 4 H 0.104 0.896 5 N -0.372 5.372 6 C 0.023 3.977 7 N -0.397 5.397 8 C 0.396 3.604 9 O -0.449 6.449 10 N -0.328 5.328 11 C 0.078 3.922 12 C -0.285 4.285 13 C -0.111 4.111 14 C -0.194 4.194 15 C 0.117 3.883 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.423 5.423 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.230 4.230 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.234 0.766 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.191 -4.095 -2.216 17.810 hybrid contribution -0.521 -0.679 0.539 1.011 sum -17.712 -4.774 -1.677 18.420 Atomic orbital electron populations 1.21773 0.95477 1.02001 1.01760 1.22283 0.96405 0.97922 1.03244 1.21745 0.94875 0.92965 0.93752 0.89571 1.58853 1.16168 1.58139 1.04027 1.21108 0.91404 0.83323 1.01906 1.44898 1.05746 1.09488 1.79579 1.16008 0.82276 0.83693 0.78381 1.90965 1.55078 1.43395 1.55417 1.42573 1.07047 1.06424 1.76796 1.17232 0.79854 0.96470 0.98597 1.20019 0.95295 1.00150 1.13054 1.20439 0.92734 0.98154 0.99818 1.21325 0.99277 0.96680 1.02147 1.17495 0.90440 0.91868 0.88518 1.19590 0.99537 0.96320 1.33382 0.90420 1.25892 0.99235 0.95692 0.93331 1.69840 1.24058 1.15551 1.32862 0.86305 0.80460 0.81551 0.78417 1.19408 1.20399 1.18593 1.21001 0.92947 1.01434 1.07658 0.92451 0.92886 0.92435 0.91546 0.90938 0.84562 0.84328 0.91996 0.91471 0.76607 0.77300 0.89401 0.89126 0.86380 0.91078 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.68 37.16 0.36 -0.47 16 2 C -0.16 -1.06 5.58 -26.73 -0.15 -1.21 16 3 C 0.08 0.62 2.96 -67.72 -0.20 0.42 16 4 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 5 N -0.84 -6.08 8.62 -4.67 -0.04 -6.13 16 6 C 0.15 1.74 5.34 -4.05 -0.02 1.72 16 7 N -0.74 -10.14 5.39 -65.23 -0.35 -10.50 16 8 C 0.70 13.42 8.29 -86.93 -0.72 12.70 16 9 O -0.57 -13.78 14.09 5.29 0.07 -13.70 16 10 N -0.68 -13.01 5.34 -14.27 -0.08 -13.09 16 11 C 0.17 4.07 6.25 -83.76 -0.52 3.55 16 12 C -0.26 -6.05 9.97 -39.10 -0.39 -6.44 16 13 C -0.09 -2.24 10.02 -39.69 -0.40 -2.63 16 14 C -0.17 -4.74 8.69 -38.84 -0.34 -5.07 16 15 C 0.12 3.42 5.57 -106.85 -0.59 2.82 16 16 C -0.46 -13.00 9.05 -37.74 -0.34 -13.34 16 17 H 0.08 2.18 7.90 -52.49 -0.41 1.77 16 18 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 19 N -0.80 -21.32 10.94 55.55 0.61 -20.71 16 20 Si 0.91 19.63 29.59 -169.99 -5.03 14.60 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.21 -5.66 8.39 -38.68 -0.32 -5.99 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.25 6.87 -51.93 -0.36 -0.10 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.34 1.91 7.55 -39.29 -0.30 1.61 16 31 H 0.34 2.55 9.00 -39.29 -0.35 2.20 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 4.53 8.16 -40.82 -0.33 4.20 16 35 H 0.39 5.91 8.84 -40.82 -0.36 5.55 16 36 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.12 3.27 6.16 -52.49 -0.32 2.95 16 39 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 40 H 0.11 3.00 6.48 -52.49 -0.34 2.65 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -32.33 332.61 -9.25 -41.58 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -5.72 Total: 14.99 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.73 Total: -12.06 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.14 Total: -50.42 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.07 Total: -13.70 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.33 -9.25 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415819289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.578 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds