Wall clock time and date at job start Mon Mar 30 2020 02:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 H 1.08995 * 109.46818 * 305.00439 * 3 2 1 5 5 N 1.46900 * 109.46920 * 65.00409 * 3 2 1 6 6 C 1.52994 * 109.46944 * 185.00136 * 3 2 1 7 7 N 1.46497 * 109.47278 * 185.00133 * 6 3 2 8 8 C 1.34771 * 120.00512 * 180.02562 * 7 6 3 9 9 O 1.21586 * 119.99877 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00387 * 180.02562 * 8 7 6 11 11 C 1.39956 * 120.00346 * 174.84981 * 10 8 7 12 12 C 1.39291 * 119.94924 * 145.76626 * 11 10 8 13 13 C 1.38491 * 120.42684 * 180.02562 * 12 11 10 14 14 C 1.37677 * 120.32486 * 359.97438 * 13 12 11 15 15 C 1.40742 * 119.88063 * 359.97438 * 14 13 12 16 16 C 1.41411 * 120.20799 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99952 * 205.17512 * 16 15 14 18 18 C 1.39929 * 120.00043 * 25.17866 * 16 15 14 19 19 N 1.30837 * 120.00049 * 16.78900 * 18 16 15 20 20 Si 1.86797 * 120.00131 * 196.78380 * 18 16 15 21 21 H 1.48503 * 109.47128 * 94.96477 * 20 18 16 22 22 H 1.48500 * 109.47464 * 214.96553 * 20 18 16 23 23 H 1.48495 * 109.47270 * 334.96671 * 20 18 16 24 24 C 1.38237 * 119.94286 * 325.49143 * 11 10 8 25 25 H 1.08997 * 109.47143 * 59.99407 * 1 2 3 26 26 H 1.09003 * 109.46834 * 299.99737 * 1 2 3 27 27 H 1.08998 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46889 * 120.00112 * 2 1 3 29 29 H 1.09003 * 109.46834 * 240.00263 * 2 1 3 30 30 H 1.00903 * 111.00124 * 296.04352 * 5 3 2 31 31 H 1.00899 * 111.00636 * 59.99718 * 5 3 2 32 32 H 1.08997 * 109.47653 * 305.00038 * 6 3 2 33 33 H 1.09002 * 109.47401 * 65.00343 * 6 3 2 34 34 H 0.97005 * 119.99579 * 0.02562 * 7 6 3 35 35 H 0.97006 * 119.99778 * 354.84415 * 10 8 7 36 36 H 1.08003 * 119.78394 * 0.02562 * 12 11 10 37 37 H 1.08002 * 119.83160 * 180.02562 * 13 12 11 38 38 H 1.07991 * 120.06027 * 179.97438 * 14 13 12 39 39 H 0.96994 * 119.99818 * 180.02562 * 19 18 16 40 40 H 1.07992 * 120.16199 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 7 1.6515 2.0992 1.2553 6 6 3.5648 1.4443 -0.1258 7 7 4.0631 2.8167 -0.0060 8 6 5.3857 3.0629 -0.0869 9 8 6.1654 2.1460 -0.2588 10 7 5.8441 4.3255 0.0239 11 6 7.2219 4.5701 0.0481 12 6 7.7327 5.7291 -0.5316 13 6 9.0944 5.9809 -0.5137 14 6 9.9587 5.0876 0.0783 15 6 9.4569 3.9128 0.6690 16 6 10.3386 2.9903 1.2784 17 1 10.0583 1.9507 1.3632 18 6 11.5739 3.4244 1.7718 19 7 11.7861 4.6995 1.9742 20 14 12.9202 2.1834 2.1417 21 1 13.8263 2.0722 0.9704 22 1 13.6953 2.6321 3.3262 23 1 12.3094 0.8593 2.4224 24 6 8.0731 3.6639 0.6524 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 0.6477 2.1683 1.3316 31 1 2.0423 1.6179 2.0513 32 1 3.9955 0.8311 0.6658 33 1 3.8499 1.0377 -1.0961 34 1 3.4411 3.5482 0.1316 35 1 5.2191 5.0646 0.0867 36 1 7.0624 6.4360 -0.9980 37 1 9.4800 6.8828 -0.9657 38 1 11.0198 5.2880 0.0894 39 1 12.6426 5.0004 2.3158 40 1 7.6776 2.7670 1.1056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415819289.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:55 Heat of formation + Delta-G solvation = -43.867469 kcal Electronic energy + Delta-G solvation = -20772.008852 eV Core-core repulsion = 17584.781025 eV Total energy + Delta-G solvation = -3187.227827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39117 -39.28815 -38.24744 -36.15922 -35.09655 -34.62669 -31.72441 -31.61671 -30.17974 -28.48010 -27.21869 -24.56034 -23.07204 -22.63936 -21.86249 -21.32532 -19.54868 -19.18173 -17.60577 -17.33647 -16.98586 -16.45936 -16.29439 -16.01386 -15.75258 -15.27853 -14.98009 -14.90781 -14.62211 -14.34440 -13.95544 -13.57188 -13.45892 -13.03397 -12.91750 -12.84245 -12.76112 -12.42359 -12.16476 -11.97548 -11.95599 -11.79441 -11.52835 -11.22110 -10.96990 -10.76230 -10.03647 -9.63939 -9.36941 -8.69995 -8.55794 -6.35140 0.95026 1.05577 1.36548 1.50194 1.50887 1.76929 2.22121 2.24042 2.76375 3.33616 3.61694 3.76632 3.81479 4.01768 4.16488 4.38855 4.49561 4.56927 4.66902 4.72506 4.76600 4.91950 5.07997 5.12177 5.12846 5.15133 5.22746 5.24554 5.35102 5.35211 5.52622 5.76731 5.86535 6.08795 6.13925 6.20824 6.25817 6.39739 6.60096 6.71153 6.96424 7.03659 7.18616 7.66251 8.35311 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.003471 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.740906 B = 8063.856800 C = 8934.731160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C 0.094 3.906 4 H 0.097 0.903 5 N -0.845 5.845 6 C 0.143 3.857 7 N -0.713 5.713 8 C 0.691 3.309 9 O -0.625 6.625 10 N -0.671 5.671 11 C 0.178 3.822 12 C -0.252 4.252 13 C -0.090 4.090 14 C -0.200 4.200 15 C 0.090 3.910 16 C -0.503 4.503 17 H 0.060 0.940 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.261 1.261 23 H -0.266 1.266 24 C -0.237 4.237 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.354 0.646 31 H 0.343 0.657 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.416 0.584 35 H 0.417 0.583 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.289 0.711 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.114 -2.981 -2.298 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C -0.018 4.018 4 H 0.115 0.885 5 N -0.376 5.376 6 C 0.018 3.982 7 N -0.370 5.370 8 C 0.391 3.609 9 O -0.505 6.505 10 N -0.319 5.319 11 C 0.084 3.916 12 C -0.274 4.274 13 C -0.108 4.108 14 C -0.220 4.220 15 C 0.087 3.913 16 C -0.533 4.533 17 H 0.079 0.921 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.185 1.185 23 H -0.190 1.190 24 C -0.259 4.259 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.169 0.831 31 H 0.156 0.844 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.254 0.746 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.952 -3.022 -2.619 19.369 hybrid contribution -0.169 -0.944 0.629 1.147 sum -19.121 -3.966 -1.991 19.630 Atomic orbital electron populations 1.21748 0.94050 1.02426 1.02420 1.22244 0.97520 0.96857 1.02936 1.21574 0.91620 0.94090 0.94526 0.88487 1.58827 1.17269 1.57941 1.03613 1.21300 0.94198 0.81759 1.00895 1.44720 1.03811 1.10958 1.77489 1.16272 0.83554 0.83007 0.78081 1.90943 1.56928 1.44931 1.57682 1.42334 1.05706 1.07397 1.76475 1.17304 0.81635 0.95781 0.96923 1.20450 0.95491 1.00036 1.11387 1.20829 0.93109 0.98424 0.98481 1.21298 0.99245 0.97450 1.04041 1.17833 0.91247 0.92885 0.89363 1.19733 1.01755 0.95781 1.36032 0.92138 1.26698 1.00736 0.97853 0.92427 1.69864 1.25119 1.17072 1.32781 0.85202 0.77107 0.78414 0.78985 1.18389 1.18495 1.19008 1.20935 0.93347 1.01835 1.09785 0.91995 0.91996 0.92194 0.91971 0.91288 0.83082 0.84400 0.93635 0.92280 0.74699 0.74559 0.85017 0.85753 0.87718 0.90009 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.68 71.98 0.70 -0.58 16 2 C -0.16 -1.85 5.58 30.60 0.17 -1.68 16 3 C 0.09 1.31 2.96 44.91 0.13 1.44 16 4 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 5 N -0.84 -10.40 8.62 -168.69 -1.45 -11.85 16 6 C 0.14 3.31 5.34 86.38 0.46 3.78 16 7 N -0.71 -18.74 5.39 -478.56 -2.58 -21.32 16 8 C 0.69 26.54 8.29 179.06 1.48 28.03 16 9 O -0.62 -31.17 14.09 -3.99 -0.06 -31.23 16 10 N -0.67 -24.74 5.34 -317.33 -1.70 -26.44 16 11 C 0.18 8.40 6.25 38.10 0.24 8.63 16 12 C -0.25 -10.98 9.97 22.58 0.23 -10.76 16 13 C -0.09 -4.22 10.02 22.20 0.22 -4.00 16 14 C -0.20 -11.12 8.69 22.75 0.20 -10.92 16 15 C 0.09 5.34 5.57 -21.31 -0.12 5.22 16 16 C -0.50 -30.18 9.05 23.46 0.21 -29.97 16 17 H 0.06 3.67 7.90 -2.91 -0.02 3.64 16 18 C 0.04 2.03 5.16 85.25 0.44 2.47 16 19 N -0.82 -44.89 10.94 21.82 0.24 -44.65 16 20 Si 0.98 41.12 29.59 68.60 2.03 43.15 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 C -0.24 -13.42 8.39 22.85 0.19 -13.23 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.43 6.87 -2.39 -0.02 0.41 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.35 2.98 7.55 -89.69 -0.68 2.30 16 31 H 0.34 4.54 9.00 -89.69 -0.81 3.74 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.42 8.40 8.16 -92.70 -0.76 7.64 16 35 H 0.42 11.32 8.84 -92.70 -0.82 10.51 16 36 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 37 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 38 H 0.10 5.98 6.16 -2.92 -0.02 5.97 16 39 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 40 H 0.08 4.88 6.48 -2.91 -0.02 4.86 16 Total: -1.00 -74.16 332.61 -0.93 -75.09 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -1.97 Total: 38.82 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 4.55 Total: -21.57 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -5.49 Total: -104.26 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.06 Total: -31.23 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -74.16 -0.93 -75.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415819289.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.225 kcal (2) G-P(sol) polarization free energy of solvation -74.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds