Wall clock time and date at job start Mon Mar 30 2020 02:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47156 * 2 1 4 4 H 1.08998 * 109.47113 * 303.60078 * 3 2 1 5 5 N 1.46897 * 109.46767 * 63.59266 * 3 2 1 6 6 C 1.46903 * 111.00222 * 256.42159 * 5 3 2 7 7 C 1.53003 * 109.46698 * 271.55674 * 6 5 3 8 8 C 1.50705 * 115.54637 * 158.85810 * 7 6 5 9 9 H 1.07998 * 119.99632 * 144.19545 * 8 7 6 10 10 C 1.37871 * 120.00111 * 324.18611 * 8 7 6 11 11 N 1.31517 * 120.00156 * 339.49591 * 10 8 7 12 12 Si 1.86801 * 120.00158 * 159.48927 * 10 8 7 13 13 H 1.48505 * 109.47095 * 90.00209 * 12 10 8 14 14 H 1.48500 * 109.47435 * 210.00493 * 12 10 8 15 15 H 1.48499 * 109.47045 * 330.00345 * 12 10 8 16 16 C 1.53001 * 117.50120 * 13.15178 * 7 6 5 17 17 C 1.52997 * 117.50242 * 304.52427 * 7 6 5 18 18 C 1.50694 * 109.47453 * 183.59532 * 3 2 1 19 19 C 1.38247 * 119.97088 * 284.12629 * 18 3 2 20 20 C 1.38204 * 120.02125 * 179.76635 * 19 18 3 21 21 C 1.38461 * 119.97451 * 0.50833 * 20 19 18 22 22 F 1.35096 * 120.02264 * 179.77077 * 21 20 19 23 23 C 1.38458 * 119.94850 * 359.74527 * 21 20 19 24 24 C 1.38201 * 119.97419 * 359.97438 * 23 21 20 25 25 H 1.09005 * 109.47148 * 178.40791 * 1 2 3 26 26 H 1.08999 * 109.47412 * 298.40783 * 1 2 3 27 27 H 1.09002 * 109.47586 * 58.41232 * 1 2 3 28 28 H 1.09009 * 109.47024 * 240.00527 * 2 1 3 29 29 H 1.09001 * 109.47308 * 120.00111 * 2 1 3 30 30 H 1.00901 * 111.00379 * 20.37340 * 5 3 2 31 31 H 1.08997 * 109.46923 * 31.55503 * 6 5 3 32 32 H 1.08997 * 109.47043 * 151.56136 * 6 5 3 33 33 H 0.96997 * 119.99858 * 184.99979 * 11 10 8 34 34 H 1.09000 * 117.49631 * 359.97438 * 16 7 6 35 35 H 1.08995 * 117.49751 * 145.01646 * 16 7 6 36 36 H 1.08997 * 117.50367 * 214.98200 * 17 7 6 37 37 H 1.09006 * 117.49756 * 359.97438 * 17 7 6 38 38 H 1.08002 * 119.98930 * 0.02562 * 19 18 3 39 39 H 1.08001 * 120.00837 * 180.25444 * 20 19 18 40 40 H 1.08000 * 120.00864 * 179.97438 * 23 21 20 41 41 H 1.07995 * 119.98284 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6249 1.9747 -0.8559 5 7 1.6224 2.1094 1.2405 6 6 0.4932 3.0168 0.9961 7 6 1.0240 4.3976 0.6054 8 6 0.0561 5.2783 -0.1421 9 1 0.0528 6.3445 0.0297 10 6 -0.8250 4.7228 -1.0454 11 7 -0.5793 3.5378 -1.5601 12 14 -2.3679 5.6534 -1.5383 13 1 -2.0772 6.5023 -2.7216 14 1 -3.4432 4.6861 -1.8751 15 1 -2.8100 6.5117 -0.4100 16 6 2.5060 4.5079 0.2416 17 6 1.9993 5.0779 1.5681 18 6 3.5443 1.4435 -0.0891 19 6 4.3022 1.1275 1.0231 20 6 5.6818 1.1234 0.9413 21 6 6.3050 1.4462 -0.2523 22 9 7.6536 1.4470 -0.3321 23 6 5.5449 1.7677 -1.3641 24 6 4.1653 1.7655 -1.2814 25 1 -0.3634 -1.0273 -0.0286 26 1 -0.3634 0.4889 0.9039 27 1 -0.3634 0.5383 -0.8754 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.3956 1.4344 1.9553 31 1 -0.1218 2.6218 0.1875 32 1 -0.1075 3.1013 1.9016 33 1 -1.1600 3.1783 -2.2489 34 1 3.1030 3.5968 0.2810 35 1 2.7812 5.2174 -0.5387 36 1 1.9413 6.1624 1.6605 37 1 2.2626 4.5419 2.4800 38 1 3.8159 0.8797 1.9550 39 1 6.2736 0.8725 1.8091 40 1 6.0299 2.0200 -2.2954 41 1 3.5723 2.0158 -2.1486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429784755.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:46 Heat of formation + Delta-G solvation = 3.378286 kcal Electronic energy + Delta-G solvation = -22235.032829 eV Core-core repulsion = 19029.933771 eV Total energy + Delta-G solvation = -3205.099059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.65011 -39.29847 -37.20021 -35.16775 -32.17724 -30.94498 -30.73164 -30.38631 -26.12661 -25.43603 -23.43307 -22.63224 -21.92988 -20.89133 -19.92969 -18.61771 -17.41078 -16.22556 -15.94555 -15.58296 -15.35364 -14.98119 -14.63810 -14.28433 -14.03674 -13.42565 -13.25123 -13.11960 -12.95894 -12.53300 -12.24778 -11.97675 -11.67573 -11.56330 -11.24969 -10.95990 -10.84022 -10.81810 -10.72774 -10.45633 -10.30452 -10.10782 -9.94099 -9.23304 -9.09021 -8.78676 -8.53813 -8.12957 -7.92547 -7.42285 -6.09229 -4.02788 1.48231 1.56433 3.23901 3.32661 3.38931 3.91371 4.35786 4.54209 4.87031 5.00800 5.07476 5.12574 5.24372 5.43666 5.54217 5.67685 5.69420 5.74917 5.84760 6.11933 6.13156 6.22494 6.34120 6.36803 6.41245 6.44667 6.55710 6.56120 6.62038 6.73832 6.78511 6.97785 6.98057 7.07998 7.21724 7.30215 7.43430 7.54747 7.69936 7.86775 8.06474 8.28710 8.59591 8.90770 9.50791 10.91718 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.005511 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.150022 B = 5079.673423 C = 5518.330838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.119 3.881 4 H 0.113 0.887 5 N -0.681 5.681 6 C 0.075 3.925 7 C 0.055 3.945 8 C -0.489 4.489 9 H 0.058 0.942 10 C 0.073 3.927 11 N -0.874 5.874 12 Si 0.883 3.117 13 H -0.282 1.282 14 H -0.285 1.285 15 H -0.273 1.273 16 C -0.193 4.193 17 C -0.206 4.206 18 C -0.054 4.054 19 C -0.071 4.071 20 C -0.160 4.160 21 C 0.078 3.922 22 F -0.150 7.150 23 C -0.155 4.155 24 C -0.084 4.084 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.321 0.679 31 H 0.105 0.895 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.374 -8.727 2.273 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C 0.009 3.991 4 H 0.131 0.869 5 N -0.310 5.310 6 C -0.052 4.052 7 C 0.054 3.946 8 C -0.527 4.527 9 H 0.076 0.924 10 C -0.129 4.129 11 N -0.512 5.512 12 Si 0.710 3.290 13 H -0.208 1.208 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.231 4.231 17 C -0.243 4.243 18 C -0.055 4.055 19 C -0.089 4.089 20 C -0.178 4.178 21 C 0.059 3.941 22 F -0.129 7.129 23 C -0.174 4.174 24 C -0.103 4.103 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.746 -8.380 2.145 10.970 hybrid contribution -1.099 0.080 -0.384 1.167 sum 5.647 -8.300 1.762 10.192 Atomic orbital electron populations 1.21803 0.95312 1.00576 1.03207 1.22092 0.96480 0.97422 1.01500 1.20726 0.89274 0.92961 0.96118 0.86913 1.60436 1.41484 1.21477 1.07577 1.21892 0.90594 0.92533 1.00212 1.18930 0.87675 0.92392 0.95619 1.20600 1.16226 0.93145 1.22705 0.92379 1.24887 0.97623 0.94946 0.95413 1.69846 1.37667 1.18223 1.25442 0.86738 0.83616 0.79877 0.78729 1.20815 1.21108 1.19816 1.23026 1.02615 1.01414 0.96073 1.22715 1.10603 0.97516 0.93506 1.20108 0.96639 0.96166 0.92626 1.20784 0.91845 0.97612 0.98689 1.21063 0.95756 1.04445 0.96571 1.17673 0.76456 1.04353 0.95593 1.91445 1.29850 1.94538 1.97041 1.21038 0.94507 1.03951 0.97886 1.20995 0.93204 0.97693 0.98384 0.93747 0.92882 0.91161 0.92096 0.92570 0.86198 0.87798 0.94638 0.93011 0.89187 0.92442 0.92116 0.91419 0.85356 0.85574 0.85384 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.79 37.15 0.33 -1.91 16 2 C -0.14 -1.93 5.17 -26.73 -0.14 -2.07 16 3 C 0.12 1.99 1.47 -68.87 -0.10 1.89 16 4 H 0.11 2.31 7.25 -51.93 -0.38 1.94 16 5 N -0.68 -11.95 4.33 -107.95 -0.47 -12.42 16 6 C 0.08 1.61 4.79 -3.82 -0.02 1.59 16 7 C 0.05 1.32 2.32 -155.66 -0.36 0.96 16 8 C -0.49 -13.01 8.99 -34.44 -0.31 -13.32 16 9 H 0.06 1.58 7.90 -52.49 -0.41 1.17 16 10 C 0.07 1.89 5.06 -17.82 -0.09 1.80 16 11 N -0.87 -22.12 11.06 55.43 0.61 -21.50 16 12 Si 0.88 20.12 29.59 -169.99 -5.03 15.09 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 C -0.19 -4.48 9.27 -26.73 -0.25 -4.73 16 17 C -0.21 -4.67 9.81 -26.73 -0.26 -4.93 16 18 C -0.05 -0.86 2.98 -104.62 -0.31 -1.17 16 19 C -0.07 -1.03 9.29 -39.59 -0.37 -1.40 16 20 C -0.16 -2.24 10.03 -39.51 -0.40 -2.63 16 21 C 0.08 1.16 7.30 -39.42 -0.29 0.88 16 22 F -0.15 -2.24 17.27 2.25 0.04 -2.20 16 23 C -0.15 -2.26 10.03 -39.51 -0.40 -2.66 16 24 C -0.08 -1.31 9.35 -39.59 -0.37 -1.68 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.81 6.72 -51.93 -0.35 0.46 16 27 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 28 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.32 4.97 7.87 -39.29 -0.31 4.66 16 31 H 0.10 2.37 3.76 -51.93 -0.20 2.17 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 6.33 8.32 -40.82 -0.34 5.99 16 34 H 0.09 1.95 3.91 -51.93 -0.20 1.74 16 35 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.13 1.70 7.85 -52.49 -0.41 1.29 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.13 2.02 8.00 -52.49 -0.42 1.60 16 LS Contribution 330.93 15.07 4.99 4.99 Total: -1.00 -25.96 330.93 -9.23 -35.18 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.04 Total: 10.24 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -3.33 Total: -29.38 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.15 Total: -33.93 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -25.96 -9.23 -35.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429784755.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.562 kcal (2) G-P(sol) polarization free energy of solvation -25.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds