Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46920 * 2 1 4 4 H 1.08998 * 109.47315 * 306.22972 * 3 2 1 5 5 N 1.46901 * 109.46953 * 66.23220 * 3 2 1 6 6 C 1.46896 * 110.99902 * 259.87584 * 5 3 2 7 7 C 1.52995 * 109.47138 * 273.82782 * 6 5 3 8 8 C 1.50706 * 115.55317 * 148.52801 * 7 6 5 9 9 H 1.07998 * 119.99831 * 267.45400 * 8 7 6 10 10 C 1.37877 * 119.99574 * 87.44115 * 8 7 6 11 11 N 1.31516 * 119.99599 * 179.15228 * 10 8 7 12 12 Si 1.86799 * 120.00466 * 359.15954 * 10 8 7 13 13 H 1.48500 * 109.47128 * 91.14700 * 12 10 8 14 14 H 1.48498 * 109.47365 * 211.15321 * 12 10 8 15 15 H 1.48505 * 109.46648 * 331.15082 * 12 10 8 16 16 C 1.53002 * 117.49822 * 2.82582 * 7 6 5 17 17 C 1.53006 * 117.50027 * 294.20087 * 7 6 5 18 18 C 1.50700 * 109.46795 * 186.23175 * 3 2 1 19 19 C 1.38258 * 119.98957 * 100.27202 * 18 3 2 20 20 C 1.38230 * 120.05562 * 179.97438 * 19 18 3 21 21 C 1.38213 * 120.02306 * 359.97438 * 20 19 18 22 22 C 1.38443 * 119.97458 * 0.02562 * 21 20 19 23 23 F 1.35102 * 120.02519 * 180.02562 * 22 21 20 24 24 C 1.38182 * 119.98760 * 279.98931 * 18 3 2 25 25 H 1.09002 * 109.46679 * 297.55766 * 1 2 3 26 26 H 1.09005 * 109.47010 * 177.56170 * 1 2 3 27 27 H 1.09001 * 109.48044 * 57.56166 * 1 2 3 28 28 H 1.08992 * 109.47447 * 120.00410 * 2 1 3 29 29 H 1.09006 * 109.46982 * 240.00774 * 2 1 3 30 30 H 1.00905 * 110.99372 * 23.82900 * 5 3 2 31 31 H 1.09000 * 109.47217 * 33.83245 * 6 5 3 32 32 H 1.09006 * 109.46888 * 153.82944 * 6 5 3 33 33 H 0.97006 * 119.99697 * 180.02562 * 11 10 8 34 34 H 1.08996 * 117.49958 * 359.97438 * 16 7 6 35 35 H 1.08997 * 117.50186 * 145.01981 * 16 7 6 36 36 H 1.09001 * 117.49457 * 214.97859 * 17 7 6 37 37 H 1.08995 * 117.49808 * 359.97438 * 17 7 6 38 38 H 1.08004 * 119.97642 * 0.02562 * 19 18 3 39 39 H 1.08000 * 119.98563 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.01270 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.00837 * 0.02562 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5884 1.9876 -0.8289 5 7 1.6768 2.0902 1.2675 6 6 0.4881 2.9376 1.1041 7 6 0.9140 4.3265 0.6240 8 6 -0.0748 5.0394 -0.2621 9 1 -0.0041 4.9446 -1.3356 10 6 -1.0697 5.8126 0.2977 11 7 -1.9224 6.4482 -0.4760 12 14 -1.2065 5.9574 2.1551 13 1 -0.4146 7.1244 2.6202 14 1 -2.6304 6.1428 2.5336 15 1 -0.6830 4.7201 2.7879 16 6 2.4018 4.5532 0.3484 17 6 1.7480 5.1800 1.5816 18 6 3.5390 1.4453 -0.1542 19 6 4.1063 1.7026 -1.3886 20 6 5.4812 1.7060 -1.5315 21 6 6.2905 1.4526 -0.4401 22 6 5.7237 1.1949 0.7964 23 9 6.5138 0.9476 1.8640 24 6 4.3463 1.1965 0.9393 25 1 -0.3633 0.4755 0.9111 26 1 -0.3633 -1.0268 -0.0437 27 1 -0.3635 0.5512 -0.8673 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.5360 1.4061 1.9957 31 1 -0.1802 2.4883 0.3695 32 1 -0.0291 3.0262 2.0596 33 1 -2.6221 6.9924 -0.0821 34 1 3.0772 3.7131 0.5095 35 1 2.6657 5.2181 -0.4740 36 1 1.5816 6.2572 1.5704 37 1 1.9928 4.7523 2.5538 38 1 3.4747 1.9019 -2.2417 39 1 5.9231 1.9075 -2.4961 40 1 7.3647 1.4557 -0.5519 41 1 3.9030 0.9996 1.9043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430733214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = 2.924055 kcal Electronic energy + Delta-G solvation = -22039.779123 eV Core-core repulsion = 18834.660367 eV Total energy + Delta-G solvation = -3205.118756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.78555 -39.53703 -37.57799 -35.60273 -32.09147 -31.20898 -31.13418 -30.35371 -26.83200 -25.69768 -23.63130 -22.60751 -22.15934 -21.41940 -20.34665 -18.55378 -17.36431 -16.32285 -16.18722 -16.01555 -15.54284 -15.41490 -14.75140 -14.53456 -14.42865 -13.81334 -13.46018 -13.28216 -12.96443 -12.60894 -12.50067 -12.17289 -12.00258 -11.95837 -11.74455 -11.48693 -11.14734 -10.94774 -10.83796 -10.76480 -10.33077 -10.14116 -9.95001 -9.50219 -8.91732 -8.78410 -8.58526 -8.49913 -8.20346 -7.92260 -6.07678 -4.10047 1.27811 1.35222 3.33071 3.41694 3.46937 3.69143 4.33711 4.46388 4.50816 4.78946 4.91932 5.05457 5.11195 5.15491 5.19658 5.28427 5.32527 5.50578 5.55377 5.78072 5.79273 5.93727 6.01782 6.06608 6.13561 6.15118 6.18961 6.25200 6.34071 6.39399 6.42009 6.56769 6.66174 6.72126 6.78797 7.01460 7.04397 7.23623 7.42552 7.52730 7.82889 7.93573 8.56898 8.95806 9.57104 11.04327 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.005451 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.472841 B = 5135.252726 C = 5505.163764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.141 4.141 3 C 0.122 3.878 4 H 0.096 0.904 5 N -0.680 5.680 6 C 0.085 3.915 7 C 0.003 3.997 8 C -0.487 4.487 9 H 0.074 0.926 10 C 0.076 3.924 11 N -0.902 5.902 12 Si 0.884 3.116 13 H -0.281 1.281 14 H -0.298 1.298 15 H -0.257 1.257 16 C -0.169 4.169 17 C -0.198 4.198 18 C -0.025 4.025 19 C -0.124 4.124 20 C -0.093 4.093 21 C -0.165 4.165 22 C 0.090 3.910 23 F -0.146 7.146 24 C -0.129 4.129 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.329 0.671 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.263 0.737 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.075 -13.610 0.906 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.180 4.180 3 C 0.012 3.988 4 H 0.114 0.886 5 N -0.310 5.310 6 C -0.044 4.044 7 C 0.002 3.998 8 C -0.524 4.524 9 H 0.092 0.908 10 C -0.126 4.126 11 N -0.540 5.540 12 Si 0.713 3.287 13 H -0.207 1.207 14 H -0.225 1.225 15 H -0.181 1.181 16 C -0.207 4.207 17 C -0.236 4.236 18 C -0.026 4.026 19 C -0.143 4.143 20 C -0.111 4.111 21 C -0.184 4.184 22 C 0.071 3.929 23 F -0.125 7.125 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.354 -12.966 0.875 17.257 hybrid contribution -0.653 -0.291 1.170 1.371 sum 10.701 -13.257 2.045 17.159 Atomic orbital electron populations 1.21866 0.95256 1.01425 1.02781 1.22162 0.96446 0.97006 1.02355 1.20628 0.90080 0.93304 0.94770 0.88574 1.60534 1.39958 1.24645 1.05824 1.22052 0.89124 0.93364 0.99818 1.19409 0.90680 0.91845 0.97871 1.20379 1.10765 1.27724 0.93578 0.90828 1.25004 0.95023 0.94617 0.97962 1.69911 1.17522 1.31190 1.35348 0.86797 0.76002 0.79519 0.86402 1.20680 1.22528 1.18147 1.22842 0.97623 1.02157 0.98053 1.22803 1.08674 0.98405 0.93681 1.19772 0.95719 0.94975 0.92102 1.21137 0.94907 1.00672 0.97573 1.20913 0.93386 0.98623 0.98144 1.21036 1.00639 1.04788 0.91948 1.17739 0.88673 1.02788 0.83737 1.91470 1.74146 1.91978 1.54919 1.20895 0.90858 1.02646 1.00418 0.92424 0.92920 0.91962 0.91858 0.91537 0.85359 0.93157 0.92310 0.92710 0.88812 0.91330 0.90675 0.91253 0.85430 0.85383 0.85430 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.70 37.16 0.32 -1.52 16 2 C -0.14 -1.60 5.24 -26.73 -0.14 -1.74 16 3 C 0.12 1.69 1.56 -68.86 -0.11 1.58 16 4 H 0.10 1.54 7.36 -51.93 -0.38 1.16 16 5 N -0.68 -10.42 4.04 -107.95 -0.44 -10.86 16 6 C 0.08 1.62 4.79 -3.83 -0.02 1.60 16 7 C 0.00 0.08 1.28 -155.66 -0.20 -0.12 16 8 C -0.49 -13.33 9.36 -34.44 -0.32 -13.65 16 9 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 10 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 11 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 12 Si 0.88 21.78 25.16 -169.99 -4.28 17.51 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.26 -5.93 5.32 56.52 0.30 -5.63 16 16 C -0.17 -3.57 9.20 -26.73 -0.25 -3.81 16 17 C -0.20 -4.41 7.56 -26.72 -0.20 -4.61 16 18 C -0.02 -0.33 3.31 -104.63 -0.35 -0.68 16 19 C -0.12 -1.55 9.67 -39.58 -0.38 -1.93 16 20 C -0.09 -1.04 10.04 -39.59 -0.40 -1.44 16 21 C -0.17 -1.95 10.03 -39.51 -0.40 -2.34 16 22 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 23 F -0.15 -2.04 17.27 2.25 0.04 -2.00 16 24 C -0.13 -1.73 9.30 -39.51 -0.37 -2.10 16 25 H 0.06 0.72 6.71 -51.93 -0.35 0.37 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 28 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.33 4.38 8.18 -39.29 -0.32 4.06 16 31 H 0.05 0.98 6.00 -51.93 -0.31 0.67 16 32 H 0.06 1.16 6.56 -51.93 -0.34 0.82 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.09 1.81 4.87 -51.93 -0.25 1.56 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.07 1.78 7.19 -51.93 -0.37 1.41 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.13 1.47 8.03 -52.48 -0.42 1.05 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 1.72 7.72 -52.49 -0.40 1.32 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -29.50 326.51 -8.35 -37.86 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.19 Total: 6.85 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -3.19 Total: -27.81 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.34 Total: -37.33 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.28 Total: 17.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.50 -8.35 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430733214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.781 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds