Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46920 * 2 1 4 4 H 1.08998 * 109.47315 * 306.22972 * 3 2 1 5 5 N 1.46901 * 109.46953 * 66.23220 * 3 2 1 6 6 C 1.46896 * 110.99902 * 259.87584 * 5 3 2 7 7 C 1.52995 * 109.47138 * 273.82782 * 6 5 3 8 8 C 1.50706 * 115.55317 * 148.52801 * 7 6 5 9 9 H 1.07998 * 119.99831 * 267.45400 * 8 7 6 10 10 C 1.37877 * 119.99574 * 87.44115 * 8 7 6 11 11 N 1.31516 * 119.99599 * 179.15228 * 10 8 7 12 12 Si 1.86799 * 120.00466 * 359.15954 * 10 8 7 13 13 H 1.48500 * 109.47128 * 91.14700 * 12 10 8 14 14 H 1.48498 * 109.47365 * 211.15321 * 12 10 8 15 15 H 1.48505 * 109.46648 * 331.15082 * 12 10 8 16 16 C 1.53002 * 117.49822 * 2.82582 * 7 6 5 17 17 C 1.53006 * 117.50027 * 294.20087 * 7 6 5 18 18 C 1.50700 * 109.46795 * 186.23175 * 3 2 1 19 19 C 1.38258 * 119.98957 * 100.27202 * 18 3 2 20 20 C 1.38230 * 120.05562 * 179.97438 * 19 18 3 21 21 C 1.38213 * 120.02306 * 359.97438 * 20 19 18 22 22 C 1.38443 * 119.97458 * 0.02562 * 21 20 19 23 23 F 1.35102 * 120.02519 * 180.02562 * 22 21 20 24 24 C 1.38182 * 119.98760 * 279.98931 * 18 3 2 25 25 H 1.09002 * 109.46679 * 297.55766 * 1 2 3 26 26 H 1.09005 * 109.47010 * 177.56170 * 1 2 3 27 27 H 1.09001 * 109.48044 * 57.56166 * 1 2 3 28 28 H 1.08992 * 109.47447 * 120.00410 * 2 1 3 29 29 H 1.09006 * 109.46982 * 240.00774 * 2 1 3 30 30 H 1.00905 * 110.99372 * 23.82900 * 5 3 2 31 31 H 1.09000 * 109.47217 * 33.83245 * 6 5 3 32 32 H 1.09006 * 109.46888 * 153.82944 * 6 5 3 33 33 H 0.97006 * 119.99697 * 180.02562 * 11 10 8 34 34 H 1.08996 * 117.49958 * 359.97438 * 16 7 6 35 35 H 1.08997 * 117.50186 * 145.01981 * 16 7 6 36 36 H 1.09001 * 117.49457 * 214.97859 * 17 7 6 37 37 H 1.08995 * 117.49808 * 359.97438 * 17 7 6 38 38 H 1.08004 * 119.97642 * 0.02562 * 19 18 3 39 39 H 1.08000 * 119.98563 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.01270 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.00837 * 0.02562 * 24 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5884 1.9876 -0.8289 5 7 1.6768 2.0902 1.2675 6 6 0.4881 2.9376 1.1041 7 6 0.9140 4.3265 0.6240 8 6 -0.0748 5.0394 -0.2621 9 1 -0.0041 4.9446 -1.3356 10 6 -1.0697 5.8126 0.2977 11 7 -1.9224 6.4482 -0.4760 12 14 -1.2065 5.9574 2.1551 13 1 -0.4146 7.1244 2.6202 14 1 -2.6304 6.1428 2.5336 15 1 -0.6830 4.7201 2.7879 16 6 2.4018 4.5532 0.3484 17 6 1.7480 5.1800 1.5816 18 6 3.5390 1.4453 -0.1542 19 6 4.1063 1.7026 -1.3886 20 6 5.4812 1.7060 -1.5315 21 6 6.2905 1.4526 -0.4401 22 6 5.7237 1.1949 0.7964 23 9 6.5138 0.9476 1.8640 24 6 4.3463 1.1965 0.9393 25 1 -0.3633 0.4755 0.9111 26 1 -0.3633 -1.0268 -0.0437 27 1 -0.3635 0.5512 -0.8673 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.5360 1.4061 1.9957 31 1 -0.1802 2.4883 0.3695 32 1 -0.0291 3.0262 2.0596 33 1 -2.6221 6.9924 -0.0821 34 1 3.0772 3.7131 0.5095 35 1 2.6657 5.2181 -0.4740 36 1 1.5816 6.2572 1.5704 37 1 1.9928 4.7523 2.5538 38 1 3.4747 1.9019 -2.2417 39 1 5.9231 1.9075 -2.4961 40 1 7.3647 1.4557 -0.5519 41 1 3.9030 0.9996 1.9043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430733214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = -13.215210 kcal Electronic energy + Delta-G solvation = -22040.478974 eV Core-core repulsion = 18834.660367 eV Total energy + Delta-G solvation = -3205.818607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.79809 -40.63012 -38.98088 -36.98033 -34.21146 -32.48658 -32.09044 -31.30819 -28.42460 -27.28729 -25.07374 -23.64693 -23.24588 -23.00731 -21.45051 -20.43483 -18.43247 -18.20731 -17.22119 -17.05278 -16.95541 -16.51333 -16.20505 -15.80774 -15.78119 -15.03074 -14.77766 -14.61104 -14.37327 -14.15764 -13.83189 -13.59415 -13.30704 -13.13980 -12.89280 -12.72836 -12.50406 -12.43267 -12.12101 -12.04353 -11.83374 -11.71982 -11.51600 -11.41282 -10.86185 -10.59124 -10.03665 -9.75076 -9.53179 -9.21970 -8.27538 -6.33759 0.30206 0.40905 1.37225 1.39778 1.52670 2.39463 2.72480 3.07052 3.28325 3.36816 3.45057 3.82460 3.96189 4.11251 4.20708 4.23490 4.34004 4.38525 4.50662 4.52998 4.61434 4.65171 4.73199 4.85460 4.89239 4.99956 5.02166 5.07238 5.10347 5.15195 5.19727 5.26023 5.33191 5.39051 5.46726 5.55511 5.65782 5.71976 5.80700 6.06259 6.17282 6.38623 6.68921 6.78295 7.36561 8.88234 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.005451 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.472841 B = 5135.252726 C = 5505.163764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C 0.127 3.873 4 H 0.069 0.931 5 N -0.676 5.676 6 C 0.099 3.901 7 C -0.011 4.011 8 C -0.487 4.487 9 H 0.029 0.971 10 C 0.021 3.979 11 N -0.952 5.952 12 Si 0.942 3.058 13 H -0.280 1.280 14 H -0.299 1.299 15 H -0.227 1.227 16 C -0.153 4.153 17 C -0.196 4.196 18 C -0.035 4.035 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.163 4.163 22 C 0.074 3.926 23 F -0.152 7.152 24 C -0.135 4.135 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.346 0.654 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.264 0.736 34 H 0.116 0.884 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.781 -15.302 2.421 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.017 3.983 4 H 0.087 0.913 5 N -0.307 5.307 6 C -0.030 4.030 7 C -0.012 4.012 8 C -0.526 4.526 9 H 0.047 0.953 10 C -0.176 4.176 11 N -0.592 5.592 12 Si 0.767 3.233 13 H -0.206 1.206 14 H -0.226 1.226 15 H -0.150 1.150 16 C -0.190 4.190 17 C -0.233 4.233 18 C -0.036 4.036 19 C -0.154 4.154 20 C -0.106 4.106 21 C -0.182 4.182 22 C 0.055 3.945 23 F -0.131 7.131 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.166 0.834 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.149 0.851 39 H 0.173 0.827 40 H 0.167 0.833 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.086 -14.692 2.394 19.820 hybrid contribution -1.111 0.230 0.537 1.255 sum 11.975 -14.461 2.931 19.003 Atomic orbital electron populations 1.21848 0.95648 1.02187 1.01518 1.22082 0.95911 0.95472 1.03581 1.20533 0.90539 0.94291 0.92943 0.91306 1.60359 1.37801 1.25370 1.07140 1.21653 0.90162 0.91937 0.99245 1.19349 0.90337 0.93461 0.98062 1.20585 1.11737 1.27850 0.92384 0.95291 1.25810 0.94695 0.94363 1.02709 1.70055 1.18758 1.32807 1.37553 0.85866 0.75930 0.80606 0.80865 1.20647 1.22637 1.15014 1.22803 0.96921 1.02215 0.97100 1.22809 1.08276 0.97385 0.94838 1.19707 0.95145 0.96130 0.92629 1.21337 0.95831 1.00677 0.97510 1.21218 0.92762 0.97379 0.99259 1.21334 1.01914 1.03586 0.91358 1.17945 0.88762 1.03592 0.84203 1.91454 1.74237 1.92128 1.55286 1.20928 0.91047 1.02935 1.00490 0.93130 0.91082 0.93847 0.90266 0.90590 0.83432 0.94125 0.92186 0.92709 0.86586 0.92883 0.92434 0.89002 0.85125 0.82677 0.83337 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.70 71.98 0.63 -2.80 16 2 C -0.13 -2.72 5.24 30.59 0.16 -2.56 16 3 C 0.13 3.31 1.56 44.17 0.07 3.38 16 4 H 0.07 2.20 7.36 -2.39 -0.02 2.18 16 5 N -0.68 -19.21 4.04 -495.46 -2.00 -21.21 16 6 C 0.10 3.66 4.79 86.30 0.41 4.07 16 7 C -0.01 -0.48 1.28 -52.93 -0.07 -0.54 16 8 C -0.49 -27.48 9.36 25.60 0.24 -27.24 16 9 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 10 C 0.02 1.23 5.47 84.65 0.46 1.69 16 11 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 12 Si 0.94 44.69 25.16 68.60 1.73 46.42 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 15 H -0.23 -9.62 5.32 99.48 0.53 -9.09 16 16 C -0.15 -6.30 9.20 30.60 0.28 -6.02 16 17 C -0.20 -8.34 7.56 30.60 0.23 -8.11 16 18 C -0.04 -0.87 3.31 -19.87 -0.07 -0.94 16 19 C -0.13 -3.12 9.67 22.27 0.22 -2.90 16 20 C -0.09 -1.74 10.04 22.26 0.22 -1.51 16 21 C -0.16 -3.38 10.03 22.31 0.22 -3.15 16 22 C 0.07 1.80 7.30 22.38 0.16 1.96 16 23 F -0.15 -3.92 17.27 44.97 0.78 -3.14 16 24 C -0.13 -3.31 9.30 22.31 0.21 -3.10 16 25 H 0.05 1.18 6.71 -2.39 -0.02 1.16 16 26 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 28 H 0.08 1.42 8.00 -2.39 -0.02 1.40 16 29 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 30 H 0.35 8.14 8.18 -89.69 -0.73 7.40 16 31 H 0.04 1.57 6.00 -2.39 -0.01 1.56 16 32 H 0.06 2.20 6.56 -2.38 -0.02 2.18 16 33 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 34 H 0.12 4.25 4.87 -2.39 -0.01 4.24 16 35 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.65 7.19 -2.39 -0.02 2.64 16 37 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.13 2.88 8.03 -2.91 -0.02 2.85 16 39 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.14 3.16 7.72 -2.91 -0.02 3.14 16 Total: -1.00 -64.79 326.51 4.30 -60.49 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.11 Total: 24.37 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 3.38 Total: -47.77 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -1.70 Total: -80.37 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.73 Total: 46.42 kcal Total: -64.79 4.30 -60.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430733214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.279 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds