Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47042 * 2 1 4 4 N 1.46503 * 109.46945 * 180.02562 * 3 2 1 5 5 C 1.34259 * 125.75785 * 125.00261 * 4 3 2 6 6 C 1.38038 * 107.41834 * 179.97438 * 5 4 3 7 7 C 1.47432 * 126.41323 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00099 * 5.14252 * 7 6 5 9 9 N 1.34779 * 119.99995 * 185.13478 * 7 6 5 10 10 C 1.46503 * 119.99933 * 184.60216 * 9 7 6 11 11 C 1.52995 * 109.47018 * 184.71375 * 10 9 7 12 12 C 1.50706 * 115.54995 * 294.78896 * 11 10 9 13 13 H 1.08001 * 119.99721 * 121.75380 * 12 11 10 14 14 C 1.37874 * 119.99889 * 301.46847 * 12 11 10 15 15 N 1.31513 * 119.99925 * 173.22216 * 14 12 11 16 16 Si 1.86800 * 120.00140 * 353.22633 * 14 12 11 17 17 H 1.48504 * 109.47036 * 94.23549 * 16 14 12 18 18 H 1.48498 * 109.47187 * 214.23791 * 16 14 12 19 19 H 1.48502 * 109.47107 * 334.23916 * 16 14 12 20 20 C 1.53004 * 117.49983 * 80.45679 * 11 10 9 21 21 C 1.52997 * 117.49965 * 149.11654 * 11 10 9 22 22 C 1.41289 * 107.17466 * 0.24114 * 6 5 4 23 23 N 1.30454 * 108.02051 * 359.58936 * 22 6 5 24 24 H 1.09004 * 109.46797 * 59.99755 * 1 2 3 25 25 H 1.08995 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47037 * 300.00328 * 1 2 3 27 27 H 1.09001 * 109.47215 * 240.00047 * 2 1 3 28 28 H 1.08998 * 109.47211 * 120.00303 * 2 1 3 29 29 H 1.09001 * 109.47077 * 59.99962 * 3 2 1 30 30 H 1.09001 * 109.47119 * 299.99485 * 3 2 1 31 31 H 1.08002 * 126.28812 * 359.97411 * 5 4 3 32 32 H 0.97001 * 119.99770 * 4.60802 * 9 7 6 33 33 H 1.08996 * 109.47020 * 64.71734 * 10 9 7 34 34 H 1.09001 * 109.47209 * 304.71421 * 10 9 7 35 35 H 0.97000 * 119.99887 * 180.02562 * 15 14 12 36 36 H 1.08994 * 117.49892 * 215.00121 * 20 11 10 37 37 H 1.08999 * 117.49786 * 0.02743 * 20 11 10 38 38 H 1.09006 * 117.49779 * 359.97438 * 21 11 10 39 39 H 1.09007 * 117.49913 * 144.97642 * 21 11 10 40 40 H 1.07995 * 125.99014 * 179.73766 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2892 2.0676 -0.8933 6 6 5.5996 1.8188 -0.5378 7 6 6.8033 2.3067 -1.2353 8 8 6.6942 3.0761 -2.1706 9 7 8.0248 1.9001 -0.8363 10 6 9.2245 2.4614 -1.4623 11 6 10.4647 1.7517 -0.9154 12 6 10.7399 1.9618 0.5513 13 1 10.7960 1.1133 1.2171 14 6 10.9261 3.2367 1.0421 15 7 11.0333 3.4333 2.3380 16 14 11.0259 4.6848 -0.1337 17 1 9.6820 5.3004 -0.2761 18 1 11.9775 5.6918 0.4008 19 1 11.4976 4.2135 -1.4606 20 6 10.8194 0.3885 -1.5126 21 6 11.6699 1.6162 -1.8481 22 6 5.5713 1.0040 0.6162 23 7 4.3230 0.7914 0.9296 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9559 2.6567 -1.7349 32 1 8.1095 1.2356 -0.1346 33 1 9.2868 3.5262 -1.2382 34 1 9.1712 2.3198 -2.5418 35 1 11.1639 4.3303 2.6833 36 1 11.2520 -0.3564 -0.8447 37 1 10.1695 -0.0026 -2.2954 38 1 11.5791 2.0323 -2.8515 39 1 12.6620 1.6793 -1.4009 40 1 6.4323 0.6257 1.1471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431097847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = 55.009772 kcal Electronic energy + Delta-G solvation = -21066.111958 eV Core-core repulsion = 17883.171770 eV Total energy + Delta-G solvation = -3182.940188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26442 -38.74487 -36.89412 -35.58990 -33.33782 -32.17828 -31.75658 -30.18993 -27.36806 -26.26888 -25.01462 -22.53426 -22.23509 -21.49729 -20.62411 -19.58323 -19.13216 -17.73466 -16.55323 -15.96434 -15.55947 -15.25247 -15.04997 -14.90152 -14.46145 -14.07071 -13.75119 -13.43103 -13.07052 -12.90713 -12.72752 -12.57622 -12.33840 -12.20280 -12.05289 -11.74062 -11.29354 -11.03996 -10.84446 -10.64690 -10.53562 -10.21891 -9.62219 -9.53143 -9.34826 -9.15706 -8.81255 -8.62540 -8.46133 -8.12939 -6.16428 -4.17795 1.66444 2.31471 2.37684 3.31093 3.41032 3.46547 3.85719 3.92191 4.23688 4.40549 4.47269 4.68670 4.79389 4.86684 4.95050 5.00854 5.13164 5.25041 5.25600 5.41456 5.51419 5.59816 5.69547 5.71887 5.86400 5.93816 5.99040 6.17806 6.27780 6.48099 6.51293 6.58940 6.73360 6.83813 6.95756 7.10437 7.23228 7.60683 7.69223 8.29543 8.43358 8.85188 8.88735 9.47647 10.94508 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.003944 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.320381 B = 7097.158976 C = 7256.699138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.131 3.869 4 N -0.367 5.367 5 C 0.118 3.882 6 C -0.282 4.282 7 C 0.586 3.414 8 O -0.570 6.570 9 N -0.697 5.697 10 C 0.155 3.845 11 C -0.016 4.016 12 C -0.490 4.490 13 H 0.079 0.921 14 C 0.084 3.916 15 N -0.891 5.891 16 Si 0.868 3.132 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.252 1.252 20 C -0.180 4.180 21 C -0.189 4.189 22 C 0.086 3.914 23 N -0.299 5.299 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.185 0.815 32 H 0.406 0.594 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.266 0.734 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 -5.476 -5.507 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.010 3.990 4 N -0.146 5.146 5 C -0.032 4.032 6 C -0.297 4.297 7 C 0.373 3.627 8 O -0.451 6.451 9 N -0.345 5.345 10 C 0.031 3.969 11 C -0.017 4.017 12 C -0.527 4.527 13 H 0.097 0.903 14 C -0.120 4.120 15 N -0.527 5.527 16 Si 0.696 3.304 17 H -0.204 1.204 18 H -0.220 1.220 19 H -0.176 1.176 20 C -0.218 4.218 21 C -0.228 4.228 22 C -0.101 4.101 23 N -0.119 5.119 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.202 0.798 32 H 0.241 0.759 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.395 -5.353 -5.166 19.843 hybrid contribution 0.760 1.069 -0.697 1.485 sum -17.635 -4.285 -5.862 19.071 Atomic orbital electron populations 1.21710 0.94439 1.02522 1.02119 1.21805 0.96335 0.95341 1.03998 1.21872 0.73827 0.99200 1.04069 1.48553 1.06687 1.38597 1.20754 1.22910 0.90217 0.95549 0.94571 1.20389 0.93566 1.12563 1.03172 1.17259 0.82491 0.80405 0.82584 1.90706 1.87129 1.37364 1.29871 1.45618 1.04633 1.43870 1.40393 1.21078 0.83675 0.97144 0.94958 1.19597 0.91344 0.95589 0.95161 1.20257 1.49544 0.94091 0.88805 0.90314 1.24903 0.93643 0.98718 0.94691 1.69891 1.48451 1.22391 1.11966 0.87029 0.78001 0.82516 0.82811 1.20358 1.21997 1.17559 1.22779 1.04253 0.91825 1.02907 1.23063 0.97476 1.02826 0.99401 1.24220 0.95299 0.95690 0.94912 1.77127 1.01844 1.19615 1.13311 0.92431 0.91928 0.92258 0.91309 0.90180 0.89474 0.88494 0.79840 0.75856 0.92672 0.93070 0.92458 0.89653 0.90859 0.91163 0.89306 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.42 16 2 C -0.14 -1.01 6.11 -26.73 -0.16 -1.17 16 3 C 0.13 1.04 6.49 -4.04 -0.03 1.02 16 4 N -0.37 -4.50 3.65 -60.81 -0.22 -4.72 16 5 C 0.12 1.59 11.25 -16.56 -0.19 1.40 16 6 C -0.28 -4.59 6.12 -105.07 -0.64 -5.23 16 7 C 0.59 11.49 7.81 -12.52 -0.10 11.39 16 8 O -0.57 -12.74 16.89 5.28 0.09 -12.65 16 9 N -0.70 -13.85 5.46 -61.38 -0.34 -14.19 16 10 C 0.15 3.39 5.08 -4.04 -0.02 3.37 16 11 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 12 C -0.49 -12.83 9.19 -34.44 -0.32 -13.15 16 13 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 14 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16 15 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 16 Si 0.87 21.57 24.68 -169.99 -4.20 17.37 16 17 H -0.28 -7.05 6.96 56.52 0.39 -6.66 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.25 -5.91 6.13 56.52 0.35 -5.57 16 20 C -0.18 -3.47 9.96 -26.69 -0.27 -3.74 16 21 C -0.19 -3.87 8.71 -26.70 -0.23 -4.11 16 22 C 0.09 1.30 11.50 -16.98 -0.20 1.10 16 23 N -0.30 -4.35 12.33 30.86 0.38 -3.97 16 24 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.18 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.41 7.49 7.34 -40.82 -0.30 7.19 16 33 H 0.06 1.34 4.24 -51.93 -0.22 1.12 16 34 H 0.05 1.08 8.06 -51.93 -0.42 0.66 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 40 H 0.19 2.56 7.55 -52.49 -0.40 2.16 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -32.62 336.69 -6.47 -39.09 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.02 Total: 7.21 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.01 Total: -7.78 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.60 Total: -48.31 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.20 Total: 17.37 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.62 -6.47 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431097847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.097 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds