Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47042 * 2 1 4 4 N 1.46503 * 109.46945 * 180.02562 * 3 2 1 5 5 C 1.34259 * 125.75785 * 125.00261 * 4 3 2 6 6 C 1.38038 * 107.41834 * 179.97438 * 5 4 3 7 7 C 1.47432 * 126.41323 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00099 * 5.14252 * 7 6 5 9 9 N 1.34779 * 119.99995 * 185.13478 * 7 6 5 10 10 C 1.46503 * 119.99933 * 184.60216 * 9 7 6 11 11 C 1.52995 * 109.47018 * 184.71375 * 10 9 7 12 12 C 1.50706 * 115.54995 * 294.78896 * 11 10 9 13 13 H 1.08001 * 119.99721 * 121.75380 * 12 11 10 14 14 C 1.37874 * 119.99889 * 301.46847 * 12 11 10 15 15 N 1.31513 * 119.99925 * 173.22216 * 14 12 11 16 16 Si 1.86800 * 120.00140 * 353.22633 * 14 12 11 17 17 H 1.48504 * 109.47036 * 94.23549 * 16 14 12 18 18 H 1.48498 * 109.47187 * 214.23791 * 16 14 12 19 19 H 1.48502 * 109.47107 * 334.23916 * 16 14 12 20 20 C 1.53004 * 117.49983 * 80.45679 * 11 10 9 21 21 C 1.52997 * 117.49965 * 149.11654 * 11 10 9 22 22 C 1.41289 * 107.17466 * 0.24114 * 6 5 4 23 23 N 1.30454 * 108.02051 * 359.58936 * 22 6 5 24 24 H 1.09004 * 109.46797 * 59.99755 * 1 2 3 25 25 H 1.08995 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47037 * 300.00328 * 1 2 3 27 27 H 1.09001 * 109.47215 * 240.00047 * 2 1 3 28 28 H 1.08998 * 109.47211 * 120.00303 * 2 1 3 29 29 H 1.09001 * 109.47077 * 59.99962 * 3 2 1 30 30 H 1.09001 * 109.47119 * 299.99485 * 3 2 1 31 31 H 1.08002 * 126.28812 * 359.97411 * 5 4 3 32 32 H 0.97001 * 119.99770 * 4.60802 * 9 7 6 33 33 H 1.08996 * 109.47020 * 64.71734 * 10 9 7 34 34 H 1.09001 * 109.47209 * 304.71421 * 10 9 7 35 35 H 0.97000 * 119.99887 * 180.02562 * 15 14 12 36 36 H 1.08994 * 117.49892 * 215.00121 * 20 11 10 37 37 H 1.08999 * 117.49786 * 0.02743 * 20 11 10 38 38 H 1.09006 * 117.49779 * 359.97438 * 21 11 10 39 39 H 1.09007 * 117.49913 * 144.97642 * 21 11 10 40 40 H 1.07995 * 125.99014 * 179.73766 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2892 2.0676 -0.8933 6 6 5.5996 1.8188 -0.5378 7 6 6.8033 2.3067 -1.2353 8 8 6.6942 3.0761 -2.1706 9 7 8.0248 1.9001 -0.8363 10 6 9.2245 2.4614 -1.4623 11 6 10.4647 1.7517 -0.9154 12 6 10.7399 1.9618 0.5513 13 1 10.7960 1.1133 1.2171 14 6 10.9261 3.2367 1.0421 15 7 11.0333 3.4333 2.3380 16 14 11.0259 4.6848 -0.1337 17 1 9.6820 5.3004 -0.2761 18 1 11.9775 5.6918 0.4008 19 1 11.4976 4.2135 -1.4606 20 6 10.8194 0.3885 -1.5126 21 6 11.6699 1.6162 -1.8481 22 6 5.5713 1.0040 0.6162 23 7 4.3230 0.7914 0.9296 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9559 2.6567 -1.7349 32 1 8.1095 1.2356 -0.1346 33 1 9.2868 3.5262 -1.2382 34 1 9.1712 2.3198 -2.5418 35 1 11.1639 4.3303 2.6833 36 1 11.2520 -0.3564 -0.8447 37 1 10.1695 -0.0026 -2.2954 38 1 11.5791 2.0323 -2.8515 39 1 12.6620 1.6793 -1.4009 40 1 6.4323 0.6257 1.1471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431097847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = 32.969816 kcal Electronic energy + Delta-G solvation = -21067.067682 eV Core-core repulsion = 17883.171770 eV Total energy + Delta-G solvation = -3183.895912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.36864 -40.28981 -38.57399 -36.30921 -34.91945 -34.26668 -32.64594 -31.36701 -28.77504 -27.60935 -26.62606 -23.68224 -23.19615 -22.99122 -21.61577 -21.15727 -20.68570 -19.09649 -18.25576 -17.11457 -16.91034 -16.72044 -16.60240 -15.98901 -15.58894 -15.32146 -15.29214 -14.86816 -14.61051 -14.17419 -14.02688 -13.87790 -13.70996 -13.20347 -12.99613 -12.89937 -12.59625 -12.38779 -12.15333 -12.09115 -12.03525 -11.67694 -11.44671 -11.07711 -10.90514 -10.68407 -10.56527 -10.32883 -9.99819 -9.57239 -8.30318 -6.32099 0.54403 1.14823 1.32332 1.38524 1.40019 1.48446 2.34851 2.39602 2.50545 3.00367 3.38445 3.46882 3.79316 3.90627 3.94957 4.04995 4.14663 4.27438 4.31912 4.33145 4.49843 4.52400 4.55622 4.59858 4.69834 4.82470 4.89995 4.94988 5.09278 5.12527 5.16382 5.28699 5.36377 5.40068 5.53479 5.62872 5.70954 5.89922 6.32069 6.49554 6.71120 6.81068 7.34870 7.36506 8.84047 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.003944 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.320381 B = 7097.158976 C = 7256.699138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.119 3.881 4 N -0.356 5.356 5 C 0.135 3.865 6 C -0.315 4.315 7 C 0.586 3.414 8 O -0.601 6.601 9 N -0.699 5.699 10 C 0.161 3.839 11 C -0.042 4.042 12 C -0.476 4.476 13 H 0.048 0.952 14 C 0.036 3.964 15 N -0.937 5.937 16 Si 0.917 3.083 17 H -0.290 1.290 18 H -0.297 1.297 19 H -0.228 1.228 20 C -0.155 4.155 21 C -0.184 4.184 22 C 0.082 3.918 23 N -0.315 5.315 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.131 0.869 31 H 0.212 0.788 32 H 0.410 0.590 33 H 0.030 0.970 34 H 0.063 0.937 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.103 -5.851 -7.468 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.001 3.999 4 N -0.134 5.134 5 C -0.018 4.018 6 C -0.330 4.330 7 C 0.375 3.625 8 O -0.485 6.485 9 N -0.347 5.347 10 C 0.037 3.963 11 C -0.043 4.043 12 C -0.513 4.513 13 H 0.066 0.934 14 C -0.163 4.163 15 N -0.577 5.577 16 Si 0.744 3.256 17 H -0.217 1.217 18 H -0.224 1.224 19 H -0.150 1.150 20 C -0.192 4.192 21 C -0.222 4.222 22 C -0.105 4.105 23 N -0.136 5.136 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.228 0.772 32 H 0.247 0.753 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -20.094 -5.770 -7.125 22.087 hybrid contribution 1.162 1.085 -0.064 1.591 sum -18.932 -4.685 -7.189 20.785 Atomic orbital electron populations 1.21679 0.92502 1.02976 1.03093 1.21739 0.97881 0.94657 1.02655 1.22364 0.71206 1.00063 1.06298 1.48933 1.08073 1.36953 1.19440 1.23288 0.89386 0.94403 0.94675 1.20240 0.93465 1.14901 1.04388 1.17655 0.83060 0.79638 0.82125 1.90672 1.87591 1.38835 1.31397 1.45614 1.04533 1.44034 1.40568 1.20901 0.84079 0.95658 0.95681 1.19444 0.92724 0.98918 0.93222 1.20401 1.47419 0.92701 0.90782 0.93408 1.25524 0.94086 1.01099 0.95576 1.70006 1.51251 1.22730 1.13689 0.86249 0.77092 0.79889 0.82325 1.21709 1.22392 1.15043 1.22826 1.03203 0.90606 1.02552 1.23110 0.96258 1.03221 0.99632 1.24330 0.95842 0.95581 0.94732 1.77095 1.01851 1.20320 1.14292 0.91016 0.91803 0.91704 0.91998 0.92214 0.88402 0.85135 0.77170 0.75346 0.95194 0.91838 0.92680 0.89540 0.88280 0.88948 0.89888 0.78417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.13 -1.68 6.11 30.59 0.19 -1.49 16 3 C 0.12 1.56 6.49 86.38 0.56 2.12 16 4 N -0.36 -8.00 3.65 -346.29 -1.26 -9.26 16 5 C 0.14 3.36 11.25 84.27 0.95 4.31 16 6 C -0.32 -9.99 6.12 -20.15 -0.12 -10.11 16 7 C 0.59 22.69 7.81 86.66 0.68 23.36 16 8 O -0.60 -26.47 16.89 -4.02 -0.07 -26.54 16 9 N -0.70 -27.51 5.46 -466.38 -2.55 -30.06 16 10 C 0.16 6.85 5.08 86.38 0.44 7.29 16 11 C -0.04 -1.81 0.85 -52.93 -0.04 -1.85 16 12 C -0.48 -25.14 9.19 25.60 0.24 -24.90 16 13 H 0.05 2.77 8.06 -2.91 -0.02 2.74 16 14 C 0.04 2.03 5.46 84.65 0.46 2.49 16 15 N -0.94 -56.78 13.96 21.45 0.30 -56.48 16 16 Si 0.92 44.86 24.68 68.60 1.69 46.55 16 17 H -0.29 -14.67 6.96 99.48 0.69 -13.98 16 18 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 19 H -0.23 -10.11 6.13 99.48 0.61 -9.50 16 20 C -0.15 -5.55 9.96 30.62 0.30 -5.24 16 21 C -0.18 -7.02 8.71 30.62 0.27 -6.76 16 22 C 0.08 2.45 11.50 85.65 0.99 3.43 16 23 N -0.32 -8.90 12.33 -56.27 -0.69 -9.59 16 24 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.13 0.88 8.06 -2.39 -0.02 0.86 16 31 H 0.21 3.97 8.06 -2.91 -0.02 3.94 16 32 H 0.41 15.19 7.34 -92.71 -0.68 14.51 16 33 H 0.03 1.43 4.24 -2.39 -0.01 1.42 16 34 H 0.06 2.54 8.06 -2.39 -0.02 2.52 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 40 H 0.20 5.35 7.55 -2.91 -0.02 5.33 16 Total: -1.00 -71.12 336.69 3.28 -67.84 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.25 Total: 25.32 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.61 Total: -7.79 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -4.21 Total: -105.39 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.07 Total: -26.54 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.69 Total: 46.55 kcal Total: -71.12 3.28 -67.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431097847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.811 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds